g.arboreum_cottongen_reftransV1_0009137, g.arboreum_cottongen_reftransV1_0009137 (contig) Gossypium arboreum
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A0D2N8G3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G117500 PE=4 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 1.891e-86 Identity = 129/137 (94.16%), Postives = 132/137 (96.35%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 NSEISPSQFEAHAGW SRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFH+ECISLPRIP GTWHCRYCQNTFQ EKFV+ NANALAAGRVAGIDPIEQITKR IRII+TPE Sbjct: 531 NSEISPSQFEAHAGWASRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHIECISLPRIPTGTWHCRYCQNTFQNEKFVQHNANALAAGRVAGIDPIEQITKRCIRIIRTPE 667
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A061GWZ8_THECC (Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain, putative OS=Theobroma cacao GN=TCM_041570 PE=4 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 1.231e-80 Identity = 123/137 (89.78%), Postives = 127/137 (92.70%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 NSEISPSQFEAHAGW +RRKPFQ+IYTSNGVSLHELSISL K RKFST ENDDLCSICLDGGNLLCCDTCPRAFH +C+SLP IP GTWHCRYCQN FQKEKFVERN NALAAGRVAGIDPIEQITKR IRIIKTPE Sbjct: 550 NSEISPSQFEAHAGWATRRKPFQHIYTSNGVSLHELSISLLKTRKFSTNENDDLCSICLDGGNLLCCDTCPRAFHKDCVSLPNIPTGTWHCRYCQNNFQKEKFVERNVNALAAGRVAGIDPIEQITKRCIRIIKTPE 686
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A0D2RTH4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G104200 PE=4 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 7.396e-79 Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 NSEISPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSISL KN+K+ST + DDLCSICL GG+L CC+TCPRAFH EC+SLP IP GTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE Sbjct: 514 NSEISPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSISLLKNQKYSTNDCDDLCSICLQGGDLFCCNTCPRAFHKECVSLPSIPTGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 650
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A0D2Q749_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G104200 PE=4 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 7.459e-79 Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 NSEISPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSISL KN+K+ST + DDLCSICL GG+L CC+TCPRAFH EC+SLP IP GTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE Sbjct: 514 NSEISPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSISLLKNQKYSTNDCDDLCSICLQGGDLFCCNTCPRAFHKECVSLPSIPTGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 650
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A067L655_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05418 PE=4 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 3.124e-71 Identity = 106/135 (78.52%), Postives = 124/135 (91.85%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKT 406 N+E+SPSQFE+HAGW SRRKP+ +IYTSNGVSLHEL++SLSKNRKFST+ENDDLC IC DGGNLLCCDTCPR++H EC+SLP IP G W+C++C N FQKEKFVERNANA+AAGRVAG+DPIEQIT+R IRI+KT Sbjct: 908 NAEVSPSQFESHAGWASRRKPYLHIYTSNGVSLHELALSLSKNRKFSTHENDDLCQICKDGGNLLCCDTCPRSYHKECLSLPEIPKGKWNCKFCFNNFQKEKFVERNANAIAAGRVAGVDPIEQITRRCIRIVKT 1042
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A067FA06_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001383mg PE=4 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 8.448e-71 Identity = 104/137 (75.91%), Postives = 119/137 (86.86%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 NSE+SPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSI LS R FS+ ENDDLC IC+DGG+LLCCD+CPRAFH++C+SLP IP GTWHCRYC NTFQKEKFVE NANA AAGR+ G+DP Q+ R IRI++TP+ Sbjct: 666 NSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPD 802
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A067EYY8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001383mg PE=4 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 9.371e-71 Identity = 104/137 (75.91%), Postives = 119/137 (86.86%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 NSE+SPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSI LS R FS+ ENDDLC IC+DGG+LLCCD+CPRAFH++C+SLP IP GTWHCRYC NTFQKEKFVE NANA AAGR+ G+DP Q+ R IRI++TP+ Sbjct: 665 NSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPD 801
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A067FAT4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001383mg PE=4 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 9.469e-71 Identity = 104/137 (75.91%), Postives = 119/137 (86.86%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 NSE+SPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSI LS R FS+ ENDDLC IC+DGG+LLCCD+CPRAFH++C+SLP IP GTWHCRYC NTFQKEKFVE NANA AAGR+ G+DP Q+ R IRI++TP+ Sbjct: 665 NSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPD 801
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: V4UEE6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030297mg PE=4 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 9.622e-71 Identity = 104/137 (75.91%), Postives = 119/137 (86.86%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 NSE+SPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSI LS R FS+ ENDDLC IC+DGG+LLCCD+CPRAFH++C+SLP IP GTWHCRYC NTFQKEKFVE NANA AAGR+ G+DP Q+ R IRI++TP+ Sbjct: 636 NSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPD 772
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: U5GH02_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22720g PE=4 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 1.216e-70 Identity = 108/137 (78.83%), Postives = 120/137 (87.59%), Query Frame = 2 Query: 2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412 NSE+SPSQFEAHAGW SRRKP+ NIYTSNGVSLHEL+ISLSK R+ S ENDDLC IC DGG LLCCD CPRAFH EC+SLP IP G W+C+YC NTF+KEKFVERNANA+AAGRVAG+DPIEQIT+R IRI+KT E Sbjct: 549 NSEVSPSQFEAHAGWASRRKPYLNIYTSNGVSLHELAISLSKGRRHSIKENDDLCQICRDGGKLLCCDVCPRAFHQECLSLPSIPRGKWYCKYCLNTFEKEKFVERNANAIAAGRVAGVDPIEQITRRCIRIVKTFE 685
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHDM_DROME (Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2) HSP 1 Score: 58.151 bits (139), Expect = 5.521e-9 Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 2 Query: 152 NDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYC 283 + + C +C DGG LLCCD+CP A+H C++ P IP G W C C Sbjct: 436 HQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRC 481 HSP 2 Score: 57.7658 bits (138), Expect = 6.722e-9 Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 2 Query: 146 YENDDLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYC 283 +E+ D C +C GG ++ CDTCPRA+HL C+ L P G W C +C Sbjct: 374 HEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHC 421
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHR4_ARATH (Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana GN=CHR4 PE=2 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 6.936e-9 Identity = 26/54 (48.15%), Postives = 32/54 (59.26%), Query Frame = 2 Query: 164 CSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYCQNTFQKEKFVER 319 C IC GG+LLCCD+CPR +H C++ P RIP G W C C + K V R Sbjct: 78 CVICDLGGDLLCCDSCPRTYHTACLNPPLKRIPNGKWICPKCSPNSEALKPVNR 131
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: PF21A_MOUSE (PHD finger protein 21A OS=Mus musculus GN=Phf21a PE=1 SV=2) HSP 1 Score: 57.3806 bits (137), Expect = 7.301e-9 Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 2 Query: 152 NDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYCQNTFQKEK 307 ++D CS+C G LL CDTC R +HL+C+ P IP G W C CQ+ K++ Sbjct: 467 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLEPPLKTIPKGMWICPRCQDQMLKKE 520
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: NSD1_MOUSE (Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Mus musculus GN=Nsd1 PE=1 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 7.365e-9 Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 2 Query: 164 CSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQ 286 C +C +GG+LLCCD+CP AFH EC+++ IP G W+C C+ Sbjct: 1608 CFVCSEGGSLLCCDSCPAAFHRECLNI-DIPEGNWYCNDCK 1647
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: NSD1_HUMAN (Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Homo sapiens GN=NSD1 PE=1 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 8.836e-9 Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 2 Query: 164 CSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQ 286 C +C +GG+LLCCD+CP AFH EC+++ IP G W+C C+ Sbjct: 1710 CFVCSEGGSLLCCDSCPAAFHRECLNI-DIPEGNWYCNDCK 1749 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0009137 ID=g.arboreum_cottongen_reftransV1_0009137; Name=g.arboreum_cottongen_reftransV1_0009137; organism=Gossypium arboreum; type=contig; length=413bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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