g.arboreum_cottongen_reftransV1_0009137, g.arboreum_cottongen_reftransV1_0009137 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009137
Unique Nameg.arboreum_cottongen_reftransV1_0009137
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length413
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A0D2N8G3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G117500 PE=4 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.891e-86
Identity = 129/137 (94.16%), Postives = 132/137 (96.35%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSEISPSQFEAHAGW SRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFH+ECISLPRIP GTWHCRYCQNTFQ EKFV+ NANALAAGRVAGIDPIEQITKR IRII+TPE
Sbjct:  531 NSEISPSQFEAHAGWASRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHIECISLPRIPTGTWHCRYCQNTFQNEKFVQHNANALAAGRVAGIDPIEQITKRCIRIIRTPE 667          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A061GWZ8_THECC (Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain, putative OS=Theobroma cacao GN=TCM_041570 PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.231e-80
Identity = 123/137 (89.78%), Postives = 127/137 (92.70%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSEISPSQFEAHAGW +RRKPFQ+IYTSNGVSLHELSISL K RKFST ENDDLCSICLDGGNLLCCDTCPRAFH +C+SLP IP GTWHCRYCQN FQKEKFVERN NALAAGRVAGIDPIEQITKR IRIIKTPE
Sbjct:  550 NSEISPSQFEAHAGWATRRKPFQHIYTSNGVSLHELSISLLKTRKFSTNENDDLCSICLDGGNLLCCDTCPRAFHKDCVSLPNIPTGTWHCRYCQNNFQKEKFVERNVNALAAGRVAGIDPIEQITKRCIRIIKTPE 686          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A0D2RTH4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G104200 PE=4 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 7.396e-79
Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSEISPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSISL KN+K+ST + DDLCSICL GG+L CC+TCPRAFH EC+SLP IP GTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE
Sbjct:  514 NSEISPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSISLLKNQKYSTNDCDDLCSICLQGGDLFCCNTCPRAFHKECVSLPSIPTGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 650          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A0D2Q749_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G104200 PE=4 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 7.459e-79
Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSEISPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSISL KN+K+ST + DDLCSICL GG+L CC+TCPRAFH EC+SLP IP GTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE
Sbjct:  514 NSEISPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSISLLKNQKYSTNDCDDLCSICLQGGDLFCCNTCPRAFHKECVSLPSIPTGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 650          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A067L655_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05418 PE=4 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 3.124e-71
Identity = 106/135 (78.52%), Postives = 124/135 (91.85%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKT 406
            N+E+SPSQFE+HAGW SRRKP+ +IYTSNGVSLHEL++SLSKNRKFST+ENDDLC IC DGGNLLCCDTCPR++H EC+SLP IP G W+C++C N FQKEKFVERNANA+AAGRVAG+DPIEQIT+R IRI+KT
Sbjct:  908 NAEVSPSQFESHAGWASRRKPYLHIYTSNGVSLHELALSLSKNRKFSTHENDDLCQICKDGGNLLCCDTCPRSYHKECLSLPEIPKGKWNCKFCFNNFQKEKFVERNANAIAAGRVAGVDPIEQITRRCIRIVKT 1042          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A067FA06_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001383mg PE=4 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 8.448e-71
Identity = 104/137 (75.91%), Postives = 119/137 (86.86%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSE+SPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSI LS  R FS+ ENDDLC IC+DGG+LLCCD+CPRAFH++C+SLP IP GTWHCRYC NTFQKEKFVE NANA AAGR+ G+DP  Q+  R IRI++TP+
Sbjct:  666 NSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPD 802          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A067EYY8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001383mg PE=4 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 9.371e-71
Identity = 104/137 (75.91%), Postives = 119/137 (86.86%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSE+SPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSI LS  R FS+ ENDDLC IC+DGG+LLCCD+CPRAFH++C+SLP IP GTWHCRYC NTFQKEKFVE NANA AAGR+ G+DP  Q+  R IRI++TP+
Sbjct:  665 NSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPD 801          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: A0A067FAT4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001383mg PE=4 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 9.469e-71
Identity = 104/137 (75.91%), Postives = 119/137 (86.86%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSE+SPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSI LS  R FS+ ENDDLC IC+DGG+LLCCD+CPRAFH++C+SLP IP GTWHCRYC NTFQKEKFVE NANA AAGR+ G+DP  Q+  R IRI++TP+
Sbjct:  665 NSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPD 801          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: V4UEE6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030297mg PE=4 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 9.622e-71
Identity = 104/137 (75.91%), Postives = 119/137 (86.86%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSE+SPSQFEAHAGW SRRKPFQ+IYTSNGVSLHELSI LS  R FS+ ENDDLC IC+DGG+LLCCD+CPRAFH++C+SLP IP GTWHCRYC NTFQKEKFVE NANA AAGR+ G+DP  Q+  R IRI++TP+
Sbjct:  636 NSEVSPSQFEAHAGWASRRKPFQHIYTSNGVSLHELSIKLSLERPFSSKENDDLCGICMDGGDLLCCDSCPRAFHIDCVSLPGIPSGTWHCRYCMNTFQKEKFVEYNANARAAGRIEGVDPFAQMVSRCIRIVQTPD 772          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Match: U5GH02_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22720g PE=4 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.216e-70
Identity = 108/137 (78.83%), Postives = 120/137 (87.59%), Query Frame = 2
Query:    2 NSEISPSQFEAHAGWPSRRKPFQNIYTSNGVSLHELSISLSKNRKFSTYENDDLCSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQNTFQKEKFVERNANALAAGRVAGIDPIEQITKRSIRIIKTPE 412
            NSE+SPSQFEAHAGW SRRKP+ NIYTSNGVSLHEL+ISLSK R+ S  ENDDLC IC DGG LLCCD CPRAFH EC+SLP IP G W+C+YC NTF+KEKFVERNANA+AAGRVAG+DPIEQIT+R IRI+KT E
Sbjct:  549 NSEVSPSQFEAHAGWASRRKPYLNIYTSNGVSLHELAISLSKGRRHSIKENDDLCQICRDGGKLLCCDVCPRAFHQECLSLPSIPRGKWYCKYCLNTFEKEKFVERNANAIAAGRVAGVDPIEQITRRCIRIVKTFE 685          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHDM_DROME (Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 5.521e-9
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 2
Query:  152 NDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYC 283
            + + C +C DGG LLCCD+CP A+H  C++ P   IP G W C  C
Sbjct:  436 HQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRC 481          

HSP 2 Score: 57.7658 bits (138), Expect = 6.722e-9
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 2
Query:  146 YENDDLCSICLDGGNLLCCDTCPRAFHLECI--SLPRIPIGTWHCRYC 283
            +E+ D C +C  GG ++ CDTCPRA+HL C+   L   P G W C +C
Sbjct:  374 HEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHC 421          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: CHR4_ARATH (Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana GN=CHR4 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 6.936e-9
Identity = 26/54 (48.15%), Postives = 32/54 (59.26%), Query Frame = 2
Query:  164 CSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYCQNTFQKEKFVER 319
            C IC  GG+LLCCD+CPR +H  C++ P  RIP G W C  C    +  K V R
Sbjct:   78 CVICDLGGDLLCCDSCPRTYHTACLNPPLKRIPNGKWICPKCSPNSEALKPVNR 131          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: PF21A_MOUSE (PHD finger protein 21A OS=Mus musculus GN=Phf21a PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 7.301e-9
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 2
Query:  152 NDDLCSICLDGGNLLCCDTCPRAFHLECISLP--RIPIGTWHCRYCQNTFQKEK 307
            ++D CS+C   G LL CDTC R +HL+C+  P   IP G W C  CQ+   K++
Sbjct:  467 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLEPPLKTIPKGMWICPRCQDQMLKKE 520          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: NSD1_MOUSE (Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Mus musculus GN=Nsd1 PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 7.365e-9
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 2
Query:  164 CSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQ 286
            C +C +GG+LLCCD+CP AFH EC+++  IP G W+C  C+
Sbjct: 1608 CFVCSEGGSLLCCDSCPAAFHRECLNI-DIPEGNWYCNDCK 1647          
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Match: NSD1_HUMAN (Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Homo sapiens GN=NSD1 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 8.836e-9
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 2
Query:  164 CSICLDGGNLLCCDTCPRAFHLECISLPRIPIGTWHCRYCQ 286
            C +C +GG+LLCCD+CP AFH EC+++  IP G W+C  C+
Sbjct: 1710 CFVCSEGGSLLCCDSCPAAFHRECLNI-DIPEGNWYCNDCK 1749          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2N8G3_GOSRA1.891e-8694.16Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GWZ8_THECC1.231e-8089.78Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type... [more]
A0A0D2RTH4_GOSRA7.396e-7988.32Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2Q749_GOSRA7.459e-7988.32Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067L655_JATCU3.124e-7178.52Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A067FA06_CITSI8.448e-7175.91Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067EYY8_CITSI9.371e-7175.91Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067FAT4_CITSI9.469e-7175.91Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4UEE6_9ROSI9.622e-7175.91Uncharacterized protein OS=Citrus clementina GN=CI... [more]
U5GH02_POPTR1.216e-7078.83Uncharacterized protein OS=Populus trichocarpa GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0009137 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CHDM_DROME5.521e-947.83Chromodomain-helicase-DNA-binding protein Mi-2 hom... [more]
CHR4_ARATH6.936e-948.15Protein CHROMATIN REMODELING 4 OS=Arabidopsis thal... [more]
PF21A_MOUSE7.301e-944.44PHD finger protein 21A OS=Mus musculus GN=Phf21a P... [more]
NSD1_MOUSE7.365e-953.66Histone-lysine N-methyltransferase, H3 lysine-36 a... [more]
NSD1_HUMAN8.836e-953.66Histone-lysine N-methyltransferase, H3 lysine-36 a... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 19..60
e-value: 3.2E-10
score: 50.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 6..67
e-value: 2.5E-18
score: 64.9
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 20..61
e-value: 2.1E-8
score: 33.8
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 17..62
score: 10.033
NoneNo IPR availablePANTHERPTHR24098:SF5ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEINcoord: 1..67
NoneNo IPR availablePANTHERPTHR24098FAMILY NOT NAMEDcoord: 1..67
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 20..59
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 8..65

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009137 ID=g.arboreum_cottongen_reftransV1_0009137; Name=g.arboreum_cottongen_reftransV1_0009137; organism=Gossypium arboreum; type=contig; length=413bp
TAATTCAGAGATAAGCCCCTCACAGTTTGAAGCTCATGCTGGTTGGCCAA
GTCGTCGCAAGCCTTTTCAAAACATTTACACATCAAATGGGGTATCTCTT
CATGAATTGTCAATATCCCTGTCGAAAAATCGGAAGTTCTCTACATATGA
GAATGATGACCTATGCAGCATCTGTTTGGATGGAGGGAATCTATTGTGTT
GTGACACATGTCCAAGGGCTTTTCACTTAGAGTGTATATCTCTTCCACGC
ATTCCAATTGGTACTTGGCACTGTAGATATTGCCAGAATACCTTCCAAAA
GGAAAAGTTTGTGGAACGTAATGCCAATGCTCTAGCTGCTGGAAGAGTTG
CGGGAATTGATCCAATAGAACAGATAACAAAGAGATCCATTCGAATCATC
AAAACTCCTGAGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding