g.arboreum_cottongen_reftransV1_0022276, g.arboreum_cottongen_reftransV1_0022276 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: A0A0C4L721_POPTR (Populus trichocarpa pseudo-response regulator 37 mRNA OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 5.484e-35 Identity = 118/309 (38.19%), Postives = 164/309 (53.07%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNR--FPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLAEAASKTF-------DRGWFEHQDENIT-----------GKDRIPDII--ATLQQAECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCLHSSSFQPM 861 SSWTKRA E ES +PMS ++ P+STCAQV+H + E + W + K+C EQ ++L + GKDLE+ V Q + K PT++A+ + F D G E + + + G D I + + + D P G S K+ + ++E SFEL+LKR + D +++D NVLRHSD SAFS+Y++AS+A QA TGNVGSCSPLD+SS KTE M S+SN NQ S GS++ NDM +T KP + DK T KC + S+FQP+ Sbjct: 125 SSWTKRAVEVESPKPMSPWDQDHLSDPPDSTCAQVIHSRPEACDNSWVPLATMKKCGEQDDELDNIVMGKDLEIGVPRIPNLQLKDPIKRVPTNIADNDGEKFPEIKSKHDGGHLEKRQQELNSEKCNTELRNQGNDLKGGGITNSANPRMDSLVLDVPNGLSS--NRKNEVTYETKEVPSFELSLKRLRDIGDAGASSHD-RNVLRHSDLSAFSRYNSASTADQAPTGNVGSCSPLDNSSEAAKTESMQNLQSNSNSTPPNQRSNGSSHNNDMGSTNNITFAKPSVISDKPTLKPTVKCHYPSAFQPV 430
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: V7AF63_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G070600g PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 4.868e-33 Identity = 122/318 (38.36%), Postives = 163/318 (51.26%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTH-LAEAASKTFD---------------RGWFEHQD-ENITGKDRIPDII----ATLQQAECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCLHSSSFQPMHGCCICSSQE 891 SSWTK A+ S +P+S + AP+STCAQV+ K EK S W T+ KEC E + L D GKDL V + N Q ++ + +H + + A+K D G E+ + T +++ ++I + QAE R + P G S K+ C ++ S ELTLKR D +N + NVLRHSD SAFSKY+TASSA QA TGNVGSCSPL + S E++ FPSHSN NQ S GSNN NDM +T ++G KP S+ +SS Q + I SSQ+ Sbjct: 3 SSWTKCLAQVGSPRPVSPHKQLADAPDSTCAQVMQTKTEKVSSRWVHATE-KECLELIDHLDDVAMGKDLAVGISLN--MQLDHRLEELSSHRMGKGANKMSDVENMQIVKEQSNACENGQLEYNGGKTRTQENQTMNVIDFTDSNSPQAESRDLNTPNGFSGFSLTKENCC--PKDHPSLELTLKRLGEVRDSKNVTGEECNVLRHSDQSAFSKYNTASSANQAQTGNVGSCSPLANGSAAPNAEVIHNFPSHSNVTPPNQQSNGSNNINDMASTNTYLGTKPCTFDKMPESVRGMGSFNSSELQTLPNNGISSSQK 315
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: A0A061FUI9_THECC (Pseudo response regulator isoform 11 OS=Theobroma cacao GN=TCM_043038 PE=4 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.872e-32 Identity = 108/288 (37.50%), Postives = 149/288 (51.74%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLA------------EAASKTFDRGWFEHQDENITG--KDRIPDIIATLQ-----QAECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDK 807 SSWTKRA E +SSQP+S ++ P+STCAQV+H +HE W VT +E E +L + GKDLE+ V Q + + T++A + + ++ E E G +++ D+I + E D P G V K+ + ++E EL+LKR + D +A++ NVLRHSD SAFS+Y++ S+A QA TGNVGSCSPLD+SS KT+ M F S SN I Q S GS+N NDM +T KP L DK Sbjct: 275 SSWTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNELENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQLELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEMPFLELSLKRLRDVGDTGTSAHE-RNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLDNSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDK 561
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: K7LPT2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 4.016e-32 Identity = 126/334 (37.72%), Postives = 162/334 (48.50%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESN-------NEWQCGNQCKNSPTHLAEA--------ASKTFDRGWFEHQ-DENITGKDRIPDIIATLQQ----AECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCLHSSSFQPMHGCCICSSQ----------EVSPETVG 912 SSWTK A+ S P+S + AP+STCAQV+ K EK S W T+ KEC E + L D GKDL + + N E C +++ S ++G E+ D+ T +++ ++I AE R + P G S Q K C +E S ELTL+R DG+N + NVLRHSD SAFSKY+TAS+ QA TGNVGSCSPLD+SS TE M F SHSNG NQ S GSNN NDM + ++G K K S +S Q + ICSSQ E+ E+VG Sbjct: 315 SSWTKCLAQVGSPHPVSPHKQLVDAPDSTCAQVMQTKTEKVSSRWVHATE-KECHELIDPLDDVAMGKDLAMGISLNMRLEHPLKELSCNPMMGKGANKMSDVDDMQIIKRQSNACEKGQLEYNGDKTRTRENQAMNVIDVTDSNSPLAESRDLNTPNGFSGFSQSKANCC--PKEHPSLELTLERLGEVRDGKNFTGEECNVLRHSDQSAFSKYNTASA-NQAQTGNVGSCSPLDNSSAAPNTETMHNFASHSNGTPPNQQSNGSNNINDMASINTYLGTKLDTFDKKPESGRGIGSFNSRELQTLQKNNICSSQKKTTAREEYTEIIKESVG 644
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: A0A0B2QKR4_GLYSO (Two-component response regulator-like PRR37 OS=Glycine soja GN=glysoja_008933 PE=4 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.671e-31 Identity = 125/334 (37.43%), Postives = 161/334 (48.20%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESN-------NEWQCGNQCKNSPTHLAEA--------ASKTFDRGWFEHQ-DENITGKDRIPDIIATLQQ----AECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCLHSSSFQPMHGCCICSSQ----------EVSPETVG 912 SSWTK A+ S P+S + AP+STCAQV+ K EK S W T+ KEC E + L D GKDL + + N E C +++ S ++G E+ D+ T +++ ++I AE R + P G S Q K C +E S ELTL+R D +N + NVLRHSD SAFSKY+TAS+ QA TGNVGSCSPLD+SS TE M F SHSNG NQ S GSNN NDM + ++G K K S +S Q + ICSSQ E+ E+VG Sbjct: 265 SSWTKCLAQVGSPHPVSPHKQLVDAPDSTCAQVMQTKTEKVSSRWVHATE-KECHELIDPLDDVAMGKDLAMGISLNMRLEHPLKELSCNPMMGKGANKMSDVDDMQIIKRQSNACEKGQLEYNGDKTRTRENQAMNVIDVTDSNSPLAESRDLNTPNGFSGFSQSKANCC--PKEHPSLELTLERLGEVRDAKNFTGEECNVLRHSDQSAFSKYNTASA-NQAQTGNVGSCSPLDNSSAAPNTETMHNFASHSNGTPPNQQSNGSNNINDMASINTYLGTKLDTFDKKPESGRGIGSFNSRELQTLQKNNICSSQKKTTAREEYTEIIKESVG 594
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSI (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 2.626e-23 Identity = 108/301 (35.88%), Postives = 151/301 (50.17%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLAEAASKTFDRGWFEHQD-------ENITGKD-RIPDIIATLQ-----QAECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGH-NVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCL-HSSSFQP 858 SSWTKRA E +S Q MS ++ P+STCAQV+H+K + + W T K ++Q E D +GKDLE+ N ++SP + T R + Q+ EN+ R D+I ++ Q RA++AP S VP+ KD + S EL+LKR + D NA + NVLR SD SAF++Y T ++ Q TG VGSCSP D+ S KT+ S+S+ + Q S GS+N NDM +T K V KP ++ S S K H+S+F P Sbjct: 245 SSWTKRAVEIDSPQAMSP-DQLADPPDSTCAQVIHLKSDICSNRWLPCTSNKNSKKQKE-TNDDFKGKDLEIGSPRN----LNTAYQSSPNE--RSIKPTDRRNEYPLQNNSKEAAMENLEESSVRAADLIGSMAKNMDAQQAARATNAPNCSSKVPEGKDK--NRDNIMPSLELSLKRSRSTGDDANAIQEEQRNVLRRSDLSAFTRYHTPVASNQGGTGFVGSCSPHDNISEAMKTDSAYNMKSNSDAAPIKQGSNGSSNNNDMGSTTKNVVTKPSTNKERVMSPSAVKANGHTSAFHP 535
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.446e-20 Identity = 106/307 (34.53%), Postives = 150/307 (48.86%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLAEAASKTFDRGWFEHQDENITGKDRIPDIIATLQQAECRASD-------------------APGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGH-NVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCL-HSSSFQP 858 SSWTKRA E +S Q MS ++ P+STCAQV+H+K + + W T K ++Q E D +GKDLE+ N ++SP E + K DR ++E + + L+++ RA+D AP S VP+ KD + S EL+LKR + DG NA + NVLR SD SAF++Y T ++ Q TG +GSCS D+SS KT+ S+S+ + Q S GS+N NDM +T K V KP ++ S S K H+S+F P Sbjct: 245 SSWTKRAVEIDSPQAMSP-DQLADPPDSTCAQVIHLKSDICSNRWLPCTSNKNSKKQKE-TNDDFKGKDLEIGSPRN----LNTAYQSSPN---ERSIKPTDR-----RNEYPLQNNSKEAAMENLEESSVRAADLIGSMAKNMDAQQAARAANAPNCSSKVPEGKDK--NRDNIMPSLELSLKRSRSTGDGANAIQEEQRNVLRRSDLSAFTRYHTPVASNQGGTGFMGSCSLHDNSSEAMKTDSAYNMKSNSDAAPIKQGSNGSSNNNDMGSTTKNVVTKPSTNKERVMSPSAVKANGHTSAFHP 535
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSI (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. indica GN=PRR73 PE=2 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 5.114e-17 Identity = 99/302 (32.78%), Postives = 149/302 (49.34%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNN--EWQCG-NQCKNSPTH-----LAEAASKTFDRGWFEHQDENITGKDRIPDIIATLQQAE-----CRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCL-HSSSFQPMH 864 SSWTKRA E +S Q MS ++ P+STCAQV+H E + W T K ++H++ D + GK LE+ N+ E+Q + +PT L + T + Q+E T + D+I+++ ++ R ++AP S VP D + S EL LKR + + +D N+L+ SD SAF++Y T ++ Q G GSCSP D+SS KT+ C S+S+ + Q S GS+N NDM ++ K KP + K S S K H+S+F P+ Sbjct: 270 SSWTKRAVEIDSPQQMSP-DQPSDLPDSTCAQVIHPTSEICSNRW-LPTANKRSGKKHKENNDDSMGKYLEIGAPRNSSMEYQSSPREMSVNPTEKQHETLMPQSKTTRETDSRNTQNEPTT---QTVDLISSIARSTDDKQVVRINNAPDCSSKVPDGNDKNRDSLIDMTSEELGLKRLK-TTGSATEIHDERNILKRSDLSAFTRYHTTVASNQGGAGFGGSCSPQDNSSEALKTDSNCKVKSNSDAAEIKQGSNGSSNNNDMGSSTKNAITKPSSNRGKVISPSAVKATQHTSAFHPVQ 565
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 6.141e-17 Identity = 99/302 (32.78%), Postives = 149/302 (49.34%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNN--EWQCG-NQCKNSPTH-----LAEAASKTFDRGWFEHQDENITGKDRIPDIIATLQQAE-----CRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCL-HSSSFQPMH 864 SSWTKRA E +S Q MS ++ P+STCAQV+H E + W T K ++H++ D + GK LE+ N+ E+Q + +PT L + T + Q+E T + D+I+++ ++ R ++AP S VP D + S EL LKR + + +D N+L+ SD SAF++Y T ++ Q G GSCSP D+SS KT+ C S+S+ + Q S GS+N NDM ++ K KP + K S S K H+S+F P+ Sbjct: 270 SSWTKRAVEIDSPQQMSP-DQPSDLPDSTCAQVIHPTSEICSNRW-LPTANKRSGKKHKENNDDSMGKYLEIGAPRNSSMEYQSSPREMSVNPTEKQHETLMPQSKTTRETDSRNTQNEPTT---QTVDLISSIARSTDDKQVVRINNAPDCSSKVPDGNDKNRDSLIDMTSEELGLKRLK-TTGSATEIHDERNILKRSDLSAFTRYHTTVASNQGGAGFGGSCSPQDNSSEALKTDSNCKVKSNSDAAEIKQGSNGSSNNNDMGSSTKNAITKPSSNRGKVISPSAVKATQHTSAFHPVQ 565 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 4
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0022276 ID=g.arboreum_cottongen_reftransV1_0022276; Name=g.arboreum_cottongen_reftransV1_0022276; organism=Gossypium arboreum; type=contig; length=1185bpback to top |