g.arboreum_cottongen_reftransV1_0022276, g.arboreum_cottongen_reftransV1_0022276 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: A0A061FNK0_THECC (Pseudo response regulator, putative isoform 5 OS=Theobroma cacao GN=TCM_043038 PE=4 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 3.148e-42 Identity = 155/423 (36.64%), Postives = 214/423 (50.59%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLA------------EAASKTFDRGWFEHQDENITG--KDRIPDIIATLQ-----QAECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCLH-SSSFQPM---HGCCICSSQEVSPETVGHDTS----LKIMAITDKQCRXXXXXXXXXXXXXXXXXXXXXXETGLRAEHAVMEDXXXXXXXXXXXXXXXE-DRVAQRAAALTKFRQKRKERCFEK 1185 SSWTKRA E +SSQP+S ++ P+STCAQV+H +HE W VT +E E +L + GKDLE+ V Q + + T++A + + ++ E E G +++ D+I + E D P G V K+ + ++E EL+LKR + D +A++ NVLRHSD SAFS+Y++ S+A QA TGNVGSCSPLD+SS KT+ M F S SN I Q S GS+N NDM +T KP L DK ++ K H SS+FQP+ HG + + +P+ + S ++ A RS+S N ++G N S N L +E+ V G SGG + +R AQR AAL KFRQKRKERCFEK Sbjct: 275 SSWTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNELENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQLELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEMPFLELSLKRLRDVGDTGTSAHE-RNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLDNSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKTSAKSFHPSSAFQPVQSGHGSALQPVAQAAPQCGSSNLSSLPHVEGNAANHSLTRSASGSNHGSNGQNGSSTVLNTRGMNLESENGVPGKGGAGGGIGSGGRNVVDQNRFAQREAALNKFRQKRKERCFEK 696
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: A0A061FMB9_THECC (Pseudo response regulator, putative isoform 7 (Fragment) OS=Theobroma cacao GN=TCM_043038 PE=4 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 7.152e-42 Identity = 156/424 (36.79%), Postives = 215/424 (50.71%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLA------------EAASKTFDRGWFEHQDENITG--KDRIPDIIATLQ-----QAECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCLH-SSSFQPM---HGCCI-CSSQEVSPETVGHDTS----LKIMAITDKQCRXXXXXXXXXXXXXXXXXXXXXXETGLRAEHAVMEDXXXXXXXXXXXXXXXE-DRVAQRAAALTKFRQKRKERCFEK 1185 SSWTKRA E +SSQP+S ++ P+STCAQV+H +HE W VT +E E +L + GKDLE+ V Q + + T++A + + ++ E E G +++ D+I + E D P G V K+ + ++E EL+LKR + D +A++ NVLRHSD SAFS+Y++ S+A QA TGNVGSCSPLD+SS KT+ M F S SN I Q S GS+N NDM +T KP L DK ++ K H SS+FQP+ HG + +Q +P+ + S ++ A RS+S N ++G N S N L +E+ V G SGG + +R AQR AAL KFRQKRKERCFEK Sbjct: 259 SSWTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNELENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQLELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEMPFLELSLKRLRDVGDTGTSAHE-RNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLDNSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKTSAKSFHPSSAFQPVQSGHGSALQPVAQAAAPQCGSSNLSSLPHVEGNAANHSLTRSASGSNHGSNGQNGSSTVLNTRGMNLESENGVPGKGGAGGGIGSGGRNVVDQNRFAQREAALNKFRQKRKERCFEK 681
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: A0A061FP64_THECC (Pseudo response regulator, putative isoform 4 OS=Theobroma cacao GN=TCM_043038 PE=4 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 8.556e-42 Identity = 156/424 (36.79%), Postives = 215/424 (50.71%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLA------------EAASKTFDRGWFEHQDENITG--KDRIPDIIATLQ-----QAECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCLH-SSSFQPM---HGCCI-CSSQEVSPETVGHDTS----LKIMAITDKQCRXXXXXXXXXXXXXXXXXXXXXXETGLRAEHAVMEDXXXXXXXXXXXXXXXE-DRVAQRAAALTKFRQKRKERCFEK 1185 SSWTKRA E +SSQP+S ++ P+STCAQV+H +HE W VT +E E +L + GKDLE+ V Q + + T++A + + ++ E E G +++ D+I + E D P G V K+ + ++E EL+LKR + D +A++ NVLRHSD SAFS+Y++ S+A QA TGNVGSCSPLD+SS KT+ M F S SN I Q S GS+N NDM +T KP L DK ++ K H SS+FQP+ HG + +Q +P+ + S ++ A RS+S N ++G N S N L +E+ V G SGG + +R AQR AAL KFRQKRKERCFEK Sbjct: 275 SSWTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNELENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQLELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEMPFLELSLKRLRDVGDTGTSAHE-RNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLDNSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKTSAKSFHPSSAFQPVQSGHGSALQPVAQAAAPQCGSSNLSSLPHVEGNAANHSLTRSASGSNHGSNGQNGSSTVLNTRGMNLESENGVPGKGGAGGGIGSGGRNVVDQNRFAQREAALNKFRQKRKERCFEK 697
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: A0A061FMB4_THECC (Pseudo response regulator, putative isoform 2 OS=Theobroma cacao GN=TCM_043038 PE=4 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 1.500e-41 Identity = 156/424 (36.79%), Postives = 215/424 (50.71%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLA------------EAASKTFDRGWFEHQDENITG--KDRIPDIIATLQ-----QAECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCLH-SSSFQPM---HGCCI-CSSQEVSPETVGHDTS----LKIMAITDKQCRXXXXXXXXXXXXXXXXXXXXXXETGLRAEHAVMEDXXXXXXXXXXXXXXXE-DRVAQRAAALTKFRQKRKERCFEK 1185 SSWTKRA E +SSQP+S ++ P+STCAQV+H +HE W VT +E E +L + GKDLE+ V Q + + T++A + + ++ E E G +++ D+I + E D P G V K+ + ++E EL+LKR + D +A++ NVLRHSD SAFS+Y++ S+A QA TGNVGSCSPLD+SS KT+ M F S SN I Q S GS+N NDM +T KP L DK ++ K H SS+FQP+ HG + +Q +P+ + S ++ A RS+S N ++G N S N L +E+ V G SGG + +R AQR AAL KFRQKRKERCFEK Sbjct: 275 SSWTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNELENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQLELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEMPFLELSLKRLRDVGDTGTSAHE-RNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLDNSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKTSAKSFHPSSAFQPVQSGHGSALQPVAQAAAPQCGSSNLSSLPHVEGNAANHSLTRSASGSNHGSNGQNGSSTVLNTRGMNLESENGVPGKGGAGGGIGSGGRNVVDQNRFAQREAALNKFRQKRKERCFEK 697
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: A0A061FNK5_THECC (Pseudo response regulator, putative isoform 10 (Fragment) OS=Theobroma cacao GN=TCM_043038 PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.561e-36 Identity = 117/315 (37.14%), Postives = 163/315 (51.75%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLA------------EAASKTFDRGWFEHQDENITG--KDRIPDIIATLQQ-----AECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCLH-SSSFQPM---HGCCI 876 SSWTKRA E +SSQP+S ++ P+STCAQV+H +HE W VT +E E +L + GKDLE+ V Q + + T++A + + ++ E E G +++ D+I + E D P G V K+ + ++E EL+LKR + D +A++ NVLRHSD SAFS+Y++ S+A QA TGNVGSCSPLD+SS KT+ M F S SN I Q S GS+N NDM +T KP L DK ++ K H SS+FQP+ HG + Sbjct: 98 SSWTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNELENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQLELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEMPFLELSLKRLRDVGDTGTSAHE-RNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLDNSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKTSAKSFHPSSAFQPVQSGHGSAL 411
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: A0A061FP68_THECC (Pseudo response regulator, putative isoform 9 (Fragment) OS=Theobroma cacao GN=TCM_043038 PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 1.218e-35 Identity = 117/315 (37.14%), Postives = 163/315 (51.75%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLA------------EAASKTFDRGWFEHQDENITG--KDRIPDIIATLQ-----QAECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCLH-SSSFQPM---HGCCI 876 SSWTKRA E +SSQP+S ++ P+STCAQV+H +HE W VT +E E +L + GKDLE+ V Q + + T++A + + ++ E E G +++ D+I + E D P G V K+ + ++E EL+LKR + D +A++ NVLRHSD SAFS+Y++ S+A QA TGNVGSCSPLD+SS KT+ M F S SN I Q S GS+N NDM +T KP L DK ++ K H SS+FQP+ HG + Sbjct: 259 SSWTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNELENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQLELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEMPFLELSLKRLRDVGDTGTSAHE-RNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLDNSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKTSAKSFHPSSAFQPVQSGHGSAL 572
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: A0A061FUI0_THECC (Pseudo response regulator, putative isoform 1 OS=Theobroma cacao GN=TCM_043038 PE=4 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.282e-35 Identity = 117/315 (37.14%), Postives = 163/315 (51.75%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLA------------EAASKTFDRGWFEHQDENITG--KDRIPDIIATLQ-----QAECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCLH-SSSFQPM---HGCCI 876 SSWTKRA E +SSQP+S ++ P+STCAQV+H +HE W VT +E E +L + GKDLE+ V Q + + T++A + + ++ E E G +++ D+I + E D P G V K+ + ++E EL+LKR + D +A++ NVLRHSD SAFS+Y++ S+A QA TGNVGSCSPLD+SS KT+ M F S SN I Q S GS+N NDM +T KP L DK ++ K H SS+FQP+ HG + Sbjct: 275 SSWTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNELENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQLELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEMPFLELSLKRLRDVGDTGTSAHE-RNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLDNSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKTSAKSFHPSSAFQPVQSGHGSAL 588
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: A0A061FN15_THECC (Pseudo response regulator isoform 3 OS=Theobroma cacao GN=TCM_043038 PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 1.412e-35 Identity = 117/315 (37.14%), Postives = 163/315 (51.75%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLA------------EAASKTFDRGWFEHQDENITG--KDRIPDIIATLQ-----QAECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCLH-SSSFQPM---HGCCI 876 SSWTKRA E +SSQP+S ++ P+STCAQV+H +HE W VT +E E +L + GKDLE+ V Q + + T++A + + ++ E E G +++ D+I + E D P G V K+ + ++E EL+LKR + D +A++ NVLRHSD SAFS+Y++ S+A QA TGNVGSCSPLD+SS KT+ M F S SN I Q S GS+N NDM +T KP L DK ++ K H SS+FQP+ HG + Sbjct: 275 SSWTKRAVEVDSSQPISPWDQLADPPHSTCAQVIHSRHEVLGDSWVPVTATREYDELDNELENVVMGKDLEIGVPKITASQLEDPSEKVMTNIAGVNKDKLSAINPKKDDEKLEKAQLELNSEKSGGDLRNQAADLIGVITNNTEPHIESAVFDIPNGLPKVSDAKEKVNYDTKEMPFLELSLKRLRDVGDTGTSAHE-RNVLRHSDLSAFSRYNSGSTANQAPTGNVGSCSPLDNSSEAVKTDSMKNFQSTSNSIPPKQQSNGSSNNNDMGSTTNNAFSKPAVLSDKPAPKTSAKSFHPSSAFQPVQSGHGSAL 588
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: F2Y9F4_POPTN (Aprr7 (Fragment) OS=Populus tremula GN=aprr7 PE=4 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.323e-35 Identity = 114/307 (37.13%), Postives = 165/307 (53.75%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNR--FPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLAEAASKTFDRGWFEHQDENITGKDRIPDIIATLQQAECRASDAPGGPS------------DVPQ-----LKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCLHSSSFQPMH 864 SSWTKRA E +S +PMS ++ P+STCAQV+H + E + W + K+C EQ ++L + GKDLE+ V Q + K P ++A+ + F +H ++ + ++ + + + +D GG + DVP K+ + ++E SFEL+LKR + D +++D NVLRHSD SAFS+Y++AS+A QA TGNVGSCSPLD+SS KTE M S+SN NQ S GS+N NDM +T KP + DK ST K + S+FQP+ Sbjct: 1 SSWTKRAVEVDSPKPMSPWDQDHLSDPPDSTCAQVIHSRPEACDNSWVPLATTKKCGEQDDELENIVMGKDLEIGVPRIPILQLKDPIKKVPINIADNDGEKFPEIKSKHDGGHLEKRQQVLNSEKRNTELRNQDNDLKGGITNSANPRMDSLVLDVPNGLSSNRKNDVTYETKEVPSFELSLKRLRDIGDAGASSHD-RNVLRHSDLSAFSRYNSASTADQAPTGNVGSCSPLDNSSEAAKTESMQNLQSNSNSTPPNQRSNGSSNNNDMGSTNNITFAKPSVISDKPTLKSTVKSQYPSAFQPVQ 306
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Match: B9HM08_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s04610g PE=4 SV=2) HSP 1 Score: 145.976 bits (367), Expect = 2.600e-35 Identity = 118/310 (38.06%), Postives = 164/310 (52.90%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNR--FPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLAEAASKTF-------DRGWFEHQDENIT-----------GKDRIPDII--ATLQQAECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCLHSSSFQPMH 864 SSWTKRA E ES +PMS ++ P+STCAQV+H + E + W + K+C EQ ++L + GKDLE+ V Q + K PT++A+ + F D G E + + + G D I + + + D P G S K+ + ++E SFEL+LKR + D +++D NVLRHSD SAFS+Y++AS+A QA TGNVGSCSPLD+SS KTE M S+SN NQ S GS++ NDM +T KP + DK T KC + S+FQP+ Sbjct: 125 SSWTKRAVEVESPKPMSPWDQDHLSDPPDSTCAQVIHSRPEACDNSWVPLATMKKCGEQDDELDNIVMGKDLEIGVPRIPNLQLKDPIKRVPTNIADNDGEKFPEIKSKHDGGHLEKRQQELNSEKCNTELRNQGNDLKGGGITNSANPRMDSLVLDVPNGLSS--NRKNEVTYETKEVPSFELSLKRLRDIGDAGASSHD-RNVLRHSDLSAFSRYNSASTADQAPTGNVGSCSPLDNSSEAAKTESMQNLQSNSNSTPPNQRSNGSSHNNDMGSTNNITFAKPSVISDKPTLKPTVKCHYPSAFQPVQ 431
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSI (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 2.626e-23 Identity = 108/301 (35.88%), Postives = 151/301 (50.17%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLAEAASKTFDRGWFEHQD-------ENITGKD-RIPDIIATLQ-----QAECRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGH-NVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCL-HSSSFQP 858 SSWTKRA E +S Q MS ++ P+STCAQV+H+K + + W T K ++Q E D +GKDLE+ N ++SP + T R + Q+ EN+ R D+I ++ Q RA++AP S VP+ KD + S EL+LKR + D NA + NVLR SD SAF++Y T ++ Q TG VGSCSP D+ S KT+ S+S+ + Q S GS+N NDM +T K V KP ++ S S K H+S+F P Sbjct: 245 SSWTKRAVEIDSPQAMSP-DQLADPPDSTCAQVIHLKSDICSNRWLPCTSNKNSKKQKE-TNDDFKGKDLEIGSPRN----LNTAYQSSPNE--RSIKPTDRRNEYPLQNNSKEAAMENLEESSVRAADLIGSMAKNMDAQQAARATNAPNCSSKVPEGKDK--NRDNIMPSLELSLKRSRSTGDDANAIQEEQRNVLRRSDLSAFTRYHTPVASNQGGTGFVGSCSPHDNISEAMKTDSAYNMKSNSDAAPIKQGSNGSSNNNDMGSTTKNVVTKPSTNKERVMSPSAVKANGHTSAFHP 535
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.446e-20 Identity = 106/307 (34.53%), Postives = 150/307 (48.86%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNNEWQCGNQCKNSPTHLAEAASKTFDRGWFEHQDENITGKDRIPDIIATLQQAECRASD-------------------APGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGH-NVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCL-HSSSFQP 858 SSWTKRA E +S Q MS ++ P+STCAQV+H+K + + W T K ++Q E D +GKDLE+ N ++SP E + K DR ++E + + L+++ RA+D AP S VP+ KD + S EL+LKR + DG NA + NVLR SD SAF++Y T ++ Q TG +GSCS D+SS KT+ S+S+ + Q S GS+N NDM +T K V KP ++ S S K H+S+F P Sbjct: 245 SSWTKRAVEIDSPQAMSP-DQLADPPDSTCAQVIHLKSDICSNRWLPCTSNKNSKKQKE-TNDDFKGKDLEIGSPRN----LNTAYQSSPN---ERSIKPTDR-----RNEYPLQNNSKEAAMENLEESSVRAADLIGSMAKNMDAQQAARAANAPNCSSKVPEGKDK--NRDNIMPSLELSLKRSRSTGDGANAIQEEQRNVLRRSDLSAFTRYHTPVASNQGGTGFMGSCSLHDNSSEAMKTDSAYNMKSNSDAAPIKQGSNGSSNNNDMGSTTKNVVTKPSTNKERVMSPSAVKANGHTSAFHP 535
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSI (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. indica GN=PRR73 PE=2 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 5.114e-17 Identity = 99/302 (32.78%), Postives = 149/302 (49.34%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNN--EWQCG-NQCKNSPTH-----LAEAASKTFDRGWFEHQDENITGKDRIPDIIATLQQAE-----CRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCL-HSSSFQPMH 864 SSWTKRA E +S Q MS ++ P+STCAQV+H E + W T K ++H++ D + GK LE+ N+ E+Q + +PT L + T + Q+E T + D+I+++ ++ R ++AP S VP D + S EL LKR + + +D N+L+ SD SAF++Y T ++ Q G GSCSP D+SS KT+ C S+S+ + Q S GS+N NDM ++ K KP + K S S K H+S+F P+ Sbjct: 270 SSWTKRAVEIDSPQQMSP-DQPSDLPDSTCAQVIHPTSEICSNRW-LPTANKRSGKKHKENNDDSMGKYLEIGAPRNSSMEYQSSPREMSVNPTEKQHETLMPQSKTTRETDSRNTQNEPTT---QTVDLISSIARSTDDKQVVRINNAPDCSSKVPDGNDKNRDSLIDMTSEELGLKRLK-TTGSATEIHDERNILKRSDLSAFTRYHTTVASNQGGAGFGGSCSPQDNSSEALKTDSNCKVKSNSDAAEIKQGSNGSSNNNDMGSSTKNAITKPSSNRGKVISPSAVKATQHTSAFHPVQ 565
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 6.141e-17 Identity = 99/302 (32.78%), Postives = 149/302 (49.34%), Query Frame = 1 Query: 1 SSWTKRAAEGESSQPMSSLNRFPGAPNSTCAQVVHVKHEKRRSPWTCVTQRKECQEQHEQLLDATEGKDLEVRVESNN--EWQCG-NQCKNSPTH-----LAEAASKTFDRGWFEHQDENITGKDRIPDIIATLQQAE-----CRASDAPGGPSDVPQLKDGACHGSEEKLSFELTLKRWQGASDGRNAANDGHNVLRHXXXXXXXXXXXXXXXKQALTGNVGSCSPLDHSSVTKKTEIMCTFPSHSNGILLNQSSVGSNNKNDMTTTAKFVGPKPKALVDKSGSISTFKCL-HSSSFQPMH 864 SSWTKRA E +S Q MS ++ P+STCAQV+H E + W T K ++H++ D + GK LE+ N+ E+Q + +PT L + T + Q+E T + D+I+++ ++ R ++AP S VP D + S EL LKR + + +D N+L+ SD SAF++Y T ++ Q G GSCSP D+SS KT+ C S+S+ + Q S GS+N NDM ++ K KP + K S S K H+S+F P+ Sbjct: 270 SSWTKRAVEIDSPQQMSP-DQPSDLPDSTCAQVIHPTSEICSNRW-LPTANKRSGKKHKENNDDSMGKYLEIGAPRNSSMEYQSSPREMSVNPTEKQHETLMPQSKTTRETDSRNTQNEPTT---QTVDLISSIARSTDDKQVVRINNAPDCSSKVPDGNDKNRDSLIDMTSEELGLKRLK-TTGSATEIHDERNILKRSDLSAFTRYHTTVASNQGGAGFGGSCSPQDNSSEALKTDSNCKVKSNSDAAEIKQGSNGSSNNNDMGSSTKNAITKPSSNRGKVISPSAVKATQHTSAFHPVQ 565 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0022276 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 4
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0022276 ID=g.arboreum_cottongen_reftransV1_0022276; Name=g.arboreum_cottongen_reftransV1_0022276; organism=Gossypium arboreum; type=contig; length=1185bpback to top |