g.arboreum_cottongen_reftransV1_0019357, g.arboreum_cottongen_reftransV1_0019357 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019357
Unique Nameg.arboreum_cottongen_reftransV1_0019357
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length406
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A078E6P8_BRANA (BnaC02g30340D protein OS=Brassica napus GN=BnaC02g30340D PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 4.666e-7
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = -2 
Query:  277 SSEEADADDEWT-ESTRECASGIAASGMSSDERNQKQVSARDLM 405
            SS+EADADDE T +ST+E AS  A SGMSSDERNQKQ SAR LM
Sbjct:  204 SSDEADADDELTDKSTKEAASSRATSGMSSDERNQKQNSARALM 247
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BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A0D3D8Q0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 5.875e-7
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = -2 
Query:  277 SSEEADADDEWT-ESTRECASGIAASGMSSDERNQKQVSARDLM 405
            SS+EADADDE T +ST+E AS    SGMSSDERNQKQ SAR LM
Sbjct:  207 SSDEADADDELTDKSTKEAASSRPTSGMSSDERNQKQNSARALM 250
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: M4EY03_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra033693 PE=4 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 7.079e-7
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = -2 
Query:  277 SSEEADADDEWT-ESTRECASGIAASGMSSDERNQKQVSARDLM 405
            SS+EADADDE T +ST+E AS  A SGMSSDERNQKQ SAR LM
Sbjct:  208 SSDEADADDELTDKSTKEAASSRATSGMSSDERNQKQNSARALM 251
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 23
Match NameE-valueIdentityDescription
A0A078E6P8_BRANA4.666e-775.00BnaC02g30340D protein OS=Brassica napus GN=BnaC02g... [more]
A0A0D3D8Q0_BRAOL5.875e-772.73Uncharacterized protein OS=Brassica oleracea var. ... [more]
M4EY03_BRARP7.079e-775.00Uncharacterized protein OS=Brassica rapa subsp. pe... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019357 ID=g.arboreum_cottongen_reftransV1_0019357; Name=g.arboreum_cottongen_reftransV1_0019357; organism=Gossypium arboreum; type=contig; length=406bp
GCGGAGTTCACTTCATGCCTGTTGTTTTCTCTTTTTTGGTCTCCTCTTTC
TGTGTGGTTTGCGAGCATCAGAATTGGAACTTAAGTTACTATTGTTTCCA
GTCTTTGAATTTGAGGATTCCCCCGCCTTAAAGGAAGAACTACTGCTTTT
TGAAGTGTGGCTAGATGTGGACATTTCAGTTCTTCGTATTGATGAATTTC
GGCTAGATGAAGATCCAAACCTTGATTTTGCACGTACAAAGTTTGAAAAA
GAATTACTTGATGGCCTCGGAGGCGGCATTAAATCTCTTGCAGATACCTG
TTTCTGATTCCTTTCATCGCTAGACATGCCGGACGCCGCTATGCCAGAAG
CACACTCCCTTGTACTTTCTGTCCATTCATCATCTGCATCAGCTTCCTCA
CTCGAG
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