g.arboreum_cottongen_reftransV1_0019357, g.arboreum_cottongen_reftransV1_0019357 (contig) Gossypium arboreum
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: W1P3B2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00002p00267210 PE=4 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.362e-7 Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRECAS---GIAASGMSSDERNQKQVSARDLM 405 SS+EADADDEWT +STRE AS G AASGMSSDE+NQ+Q+ AR LM Sbjct: 212 SSDEADADDEWTDKSTREQASSTSGKAASGMSSDEKNQRQMCARVLM 258
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: V7BE68_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G109900g PE=4 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.616e-7 Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRE---CASGIAASGMSSDERNQKQVSARDLM 405 SS+EADADDEWT +S RE ASG SGMSSDE+NQ+Q+SAR LM Sbjct: 203 SSDEADADDEWTDKSAREQASSASGKGVSGMSSDEKNQRQISARALM 249
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: I1NIA6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.694e-7 Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRE---CASGIAASGMSSDERNQKQVSARDLM 405 SS+EADADDEWT +S RE ASG SGMSSDE+NQ+Q+SAR LM Sbjct: 207 SSDEADADDEWTDKSAREQASSASGKGVSGMSSDEKNQRQISARALM 253
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: I1LC42_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.703e-7 Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRE---CASGIAASGMSSDERNQKQVSARDLM 405 SS+EADADDEWT +S RE ASG SGMSSDE+NQ+Q+SAR LM Sbjct: 203 SSDEADADDEWTDKSAREQASSASGKGVSGMSSDEKNQRQISARALM 249
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A078GB76_BRANA (BnaA06g36590D protein OS=Brassica napus GN=BnaA06g36590D PE=4 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.739e-7 Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRECASGIAASGMSSDERNQKQVSARDLM 405 SS+EADADDE T +ST+E AS A SGMSSDERNQKQ SAR LM Sbjct: 208 SSDEADADDELTDKSTKEAASSRATSGMSSDERNQKQNSARALM 251
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A0B2RAI6_GLYSO (rRNA-processing protein efg1 OS=Glycine soja GN=glysoja_029997 PE=4 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 2.194e-7 Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRE---CASGIAASGMSSDERNQKQVSARDLM 405 SS+EADADDEWT +S RE ASG SGMSSDE+NQ+Q+SAR LM Sbjct: 203 SSDEADADDEWTDKSAREQASSASGKGVSGMSSDEKNQRQISARALM 249
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A0D3ATT1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 2.330e-7 Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRECASGIAASGMSSDERNQKQVSARDLM 405 SS+EADADDE T +ST+E AS A SGMSSDERNQKQ SAR LM Sbjct: 204 SSDEADADDELTDKSTKEAASSRATSGMSSDERNQKQNSARALM 247
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A078JLW2_BRANA (BnaAnng27510D protein (Fragment) OS=Brassica napus GN=BnaAnng27510D PE=4 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 2.629e-7 Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRECASGIAASGMSSDERNQKQVSARDLM 405 SS+EADADDE T +ST+E AS A SGMSSDERNQKQ SAR LM Sbjct: 152 SSDEADADDELTDKSTKEAASSRATSGMSSDERNQKQNSARALM 195
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A0A0L7B4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G143600 PE=4 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 3.094e-7 Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRECA---SGIAASGMSSDERN-QKQVSARDLM 405 SS+EADADDEWT +STRE A SG AASGMSSDE+N Q+Q+SAR LM Sbjct: 200 SSDEADADDEWTDKSTREQASSTSGKAASGMSSDEKNHQRQISARALM 247
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A0B2P6S7_GLYSO (Putative alpha-mannosidase I MNS4 OS=Glycine soja GN=glysoja_013962 PE=4 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 3.592e-7 Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRE---CASGIAASGMSSDERNQKQVSARDLM 405 SS+EADADDEWT +S RE ASG SGMSSDE+NQ+Q+SAR LM Sbjct: 207 SSDEADADDEWTDKSAREQASSASGKGVSGMSSDEKNQRQISARALM 253 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 23
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BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019357 ID=g.arboreum_cottongen_reftransV1_0019357; Name=g.arboreum_cottongen_reftransV1_0019357; organism=Gossypium arboreum; type=contig; length=406bpback to top |