g.arboreum_cottongen_reftransV1_0006389, g.arboreum_cottongen_reftransV1_0006389 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006389 vs. ExPASy TrEMBL
Match: K7KIH9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 602.823 bits (1553), Expect = 0.000e+0 Identity = 333/579 (57.51%), Postives = 420/579 (72.54%), Query Frame = -2 Query: 291 LLEERRCSLEEWMTKLLSDIDLSRSVTVASFLELEAAARSAFQEVNKCSSEPNVAGNSTISSNEIHPSSNTSHIAGCSSVTSDYGSDTAYETSELGTPRLGRDDSSEIGSGDLTLDEDLTGSIEKIVKYGISNIDEGLFMGQAILEQLEDFPRHRTLAINMNSTSGNDIYNGNGSRASFVAGNGLELFSELEPAKVAGHARKLSTESFGSDVSFLRGGDMSICGIPNSSVNGFVDLPGTSEVLNTMGSLGNSDPQSSGDTKIVLPLDQRHKMNRVLLTMQRKLATAKTDMEDLVARLNQEIAVKGYLTTKVKDLEVELESTKQKSKETLQQAILIERERFTQMQWEMEELRQKSLEMELKLNPNQDEKQITETTNQLAEEEKDAMLQELNATKEQLNSISKRYEELELKSKADIKVLVKEVKSLRKSQKELKQEVGQSLSEKAEAEVQLVQERQIIKHVRNAREKLLNKCRLLHNHLLECSVNLSTDDEN-LIKDSSFVQEALDLLTTSDNXXXXXXXXXXXXXXXEGSATGNDDIQLNNHYNSRTDDELRKIIAGIFTENANLKKEVNSHLRHKLKCD 2024 LLEERRCSLEEW+TKLLSDID+SR VASFLELEAAARS+FQ+ ++ +SE + N+T+ S + S+ S AG SSV SDYGSDTAYE S+LGTPR+GRDD+SE+G+ DLTLDED+T IEK+VKYGISNIDEGLFMGQ ILEQLE PRH+ A ++N + NGN +S +A N +ELFSE AKV H RKLS+ES GSD S +RG DMS GIPNSS +G DLPG++ V +G++ +S+GDT++VLPLDQR+K+NR+L TMQR+L TAKTDMEDL+ RLNQEIA K +L TKVKDLEVELE+TKQK+KE LQQAILIERERFTQMQW MEELR++SLEME+KL + T + ++ D +L+ L+ATKEQL +SK+Y ELE KSKAD+KVLVKEVKSLR SQ +LK+E+ +S+ E +E E L+ ER+ + AR LL KCR+L N L EC+V+L + E I +SS +A + LTTSD+++ +LL E + L K+ GSA N D + DDE+RKIIA +F +N L+K+ N RH LK D Sbjct: 121 LLEERRCSLEEWITKLLSDIDISRCAAVASFLELEAAARSSFQDASQQNSETDPDSNNTVYSVQSPLQSSLSLFAGSSSVASDYGSDTAYEPSDLGTPRIGRDDNSEVGTDDLTLDEDMTNPIEKLVKYGISNIDEGLFMGQTILEQLEGLPRHKANARHVNYAAEKVKNNGNVYDSSLLANNTMELFSEPGHAKVVAHVRKLSSESVGSDGSSIRGSDMSNFGIPNSSGDGSHDLPGSALVSRETDIMGHTKLKSTGDTQLVLPLDQRNKLNRILSTMQRRLGTAKTDMEDLIVRLNQEIAAKDFLATKVKDLEVELETTKQKNKENLQQAILIERERFTQMQWNMEELRRQSLEMEIKLKSELGRNSYQDLTKESIVQQNDVLLENLDATKEQLEILSKQYGELEAKSKADVKVLVKEVKSLRNSQTKLKKELSESIKEHSETEKLLLHEREKREQAEVARRILLEKCRVLFNQLQECNVSLPYEYEGRTIVNSSSSTDAFNQLTTSDDQMDILLAEVENLEKDYGSAACNVDKTNDIKDGVICDDEVRKIIADLFIDNVRLRKQTNRVTRHALKLD 699
BLAST of g.arboreum_cottongen_reftransV1_0006389 vs. ExPASy TrEMBL
Match: K7KTH1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 602.438 bits (1552), Expect = 0.000e+0 Identity = 331/580 (57.07%), Postives = 422/580 (72.76%), Query Frame = -2 Query: 291 LLEERRCSLEEWMTKLLSDIDLSRSVTVASFLELEAAARSAFQEVNKCSSEPNVAGNSTISSNEIHPSSNTSHIAGCSSVTSDYGSDTAYETSELGTPRLGRDDSSEIGSGDLTLDEDLTGSIEKIVKYGISNIDEGLFMGQAILEQLEDFPRHRTLAINMNSTSGNDIYNGNGSRASFVAGNGLELFSELEPAKVAGHARKLSTESFGSDVSFLRGGDMSICGIPNSSVNGFVDLPGTSEVLNTMGSLGNSDPQSSGDTKIVLPLDQRHKMNRVLLTMQRKLATAKTDMEDLVARLNQEIAVKGYLTTKVKDLEVELESTKQKSKETLQQAILIERERFTQMQWEMEELRQKSLEMELKLNPNQDEKQITETTNQLAEEEKDAMLQELNATKEQLNSISKRYEELELKSKADIKVLVKEVKSLRKSQKELKQEVGQSLSEKAEAEVQLVQERQIIKHVRNAREKLLNKCRLLHNHLLECSVNLSTDDEN-LIKDSSFVQEALDLLTTSDNXXXXXXXXXXXXXXXEGSATGNDDIQLNNHYNSRT-DDELRKIIAGIFTENANLKKEVNSHLRHKLKCD 2024 LLEERRCSLEEW+ KLLSDID+SR VASFLELEAAARS+FQ+ N+ +SE + ++T+ S + S+ S +AG SSV SDYGSDTAYE S+LGTPR+GRDD+SE+G+ DLTLDED+T IEK+VKYGI+NIDEGLFMGQ ILEQLE PRH+ A +N + D NGN +S +A N +ELFSE AKV GH RKLS ES SD S +RG DMS GIP+SS +G DLPG++ V +G++ +S+GDT++VLPLDQR+K+NR+L TMQR+L TAKTDMEDL+ RLNQEIA K +L TK+KDLEVELE+TKQK+KE LQQAILIERERFTQMQW+MEELR+KSLEME+KL + T + ++ D + + L+ATKEQL +SK+Y ELE KSKAD+KVLVKEVKSLR SQ +LK+E+ +S+ E +E E L+ ER+ + AR KLL KCR+L N L EC+V+L + E+ I +SS +A + LTTSD+++ +LL E + L K+ GSA N D N+ + DDE+RKIIA +F +N L+K+ N R LK D Sbjct: 126 LLEERRCSLEEWIAKLLSDIDISRCTAVASFLELEAAARSSFQDANQQNSETDPDSSNTVYSVQSPLQSSLSLVAGSSSVASDYGSDTAYEPSDLGTPRIGRDDNSEVGTDDLTLDEDMTNPIEKLVKYGITNIDEGLFMGQTILEQLEGLPRHKANARYVNYVAEKDKNNGNLYDSSLLANNNMELFSEPGHAKVFGHVRKLSNESVESDGSSIRGSDMSNFGIPSSSGDGSHDLPGSALVSRETDIMGHTKSKSTGDTQLVLPLDQRNKLNRILSTMQRRLGTAKTDMEDLIVRLNQEIAAKDFLATKLKDLEVELETTKQKNKENLQQAILIERERFTQMQWDMEELRRKSLEMEMKLKSESGRNSYQDLTKESIVQQNDVLYENLDATKEQLEILSKQYGELEAKSKADVKVLVKEVKSLRNSQTKLKKELSESIKEHSETEKLLLHEREKREQAEAARRKLLEKCRVLFNQLQECNVSLPYEYEDRTIVNSSSSTDAFNQLTTSDDQMDILLAEVENLEKDYGSAASNVDKTTNDIKDGVICDDEVRKIIADLFIDNVRLRKQTNRVTRQALKLD 705
BLAST of g.arboreum_cottongen_reftransV1_0006389 vs. ExPASy TrEMBL
Match: A0A0B2PKM9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_032331 PE=4 SV=1) HSP 1 Score: 602.053 bits (1551), Expect = 0.000e+0 Identity = 333/579 (57.51%), Postives = 420/579 (72.54%), Query Frame = -2 Query: 291 LLEERRCSLEEWMTKLLSDIDLSRSVTVASFLELEAAARSAFQEVNKCSSEPNVAGNSTISSNEIHPSSNTSHIAGCSSVTSDYGSDTAYETSELGTPRLGRDDSSEIGSGDLTLDEDLTGSIEKIVKYGISNIDEGLFMGQAILEQLEDFPRHRTLAINMNSTSGNDIYNGNGSRASFVAGNGLELFSELEPAKVAGHARKLSTESFGSDVSFLRGGDMSICGIPNSSVNGFVDLPGTSEVLNTMGSLGNSDPQSSGDTKIVLPLDQRHKMNRVLLTMQRKLATAKTDMEDLVARLNQEIAVKGYLTTKVKDLEVELESTKQKSKETLQQAILIERERFTQMQWEMEELRQKSLEMELKLNPNQDEKQITETTNQLAEEEKDAMLQELNATKEQLNSISKRYEELELKSKADIKVLVKEVKSLRKSQKELKQEVGQSLSEKAEAEVQLVQERQIIKHVRNAREKLLNKCRLLHNHLLECSVNLSTDDEN-LIKDSSFVQEALDLLTTSDNXXXXXXXXXXXXXXXEGSATGNDDIQLNNHYNSRTDDELRKIIAGIFTENANLKKEVNSHLRHKLKCD 2024 LLEERRCSLEEW+TKLLSDID+SR VASFLELEAAARS+FQ+ ++ +SE + N+T+ S + S+ S AG SSV SDYGSDTAYE S+LGTPR+GRDD+SE+G+ DLTLDED+T IEK+VKYGISNIDEGLFMGQ ILEQLE PRH+ A ++N + NGN +S +A N +ELFSE AKV H RKLS+ES GSD S +RG DMS GIPNSS +G DLPG++ V +G++ +S+GDT++VLPLDQR+K+NR+L TMQR+L TAKTDMEDL+ RLNQEIA K +L TKVKDLEVELE+TKQK+KE LQQAILIERERFTQMQW MEELR++SLEME+KL + T + ++ D +L+ L+ATKEQL +SK+Y ELE KSKAD+KVLVKEVKSLR SQ +LK+E+ +S+ E +E E L+ ER+ + AR LL KCR+L N L EC+V+L + E I +SS +A + LTTSD+++ +LL E + L K+ GSA N D + DDE+RKIIA +F +N L+K+ N RH LK D Sbjct: 127 LLEERRCSLEEWITKLLSDIDISRCAAVASFLELEAAARSSFQDASQQNSETDPDSNNTVYSVQSPLQSSLSLFAGSSSVASDYGSDTAYEPSDLGTPRIGRDDNSEVGTDDLTLDEDMTNPIEKLVKYGISNIDEGLFMGQTILEQLEGLPRHKANARHVNYAAEKVKNNGNVYDSSLLANNTMELFSEPGHAKVVAHVRKLSSESVGSDGSSIRGSDMSNFGIPNSSGDGSHDLPGSALVSRETDIMGHTKLKSTGDTQLVLPLDQRNKLNRILSTMQRRLGTAKTDMEDLIVRLNQEIAAKDFLATKVKDLEVELETTKQKNKENLQQAILIERERFTQMQWNMEELRRQSLEMEIKLKSELGRNSYQDLTKESIVQQNDVLLENLDATKEQLEILSKQYGELEAKSKADVKVLVKEVKSLRNSQTKLKKELSESIKEHSETEKLLLHEREKREQAEVARRILLEKCRVLFNQLQECNVSLPYEYEGRTIVNSSSSTDAFNQLTTSDDQMDILLAEVENLEKDYGSAACNVDKTNDIKDGVICDDEVRKIIADLFIDNVRLRKQTNRVTRHALKLD 705
BLAST of g.arboreum_cottongen_reftransV1_0006389 vs. ExPASy TrEMBL
Match: I1JUB5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 601.668 bits (1550), Expect = 0.000e+0 Identity = 333/579 (57.51%), Postives = 420/579 (72.54%), Query Frame = -2 Query: 291 LLEERRCSLEEWMTKLLSDIDLSRSVTVASFLELEAAARSAFQEVNKCSSEPNVAGNSTISSNEIHPSSNTSHIAGCSSVTSDYGSDTAYETSELGTPRLGRDDSSEIGSGDLTLDEDLTGSIEKIVKYGISNIDEGLFMGQAILEQLEDFPRHRTLAINMNSTSGNDIYNGNGSRASFVAGNGLELFSELEPAKVAGHARKLSTESFGSDVSFLRGGDMSICGIPNSSVNGFVDLPGTSEVLNTMGSLGNSDPQSSGDTKIVLPLDQRHKMNRVLLTMQRKLATAKTDMEDLVARLNQEIAVKGYLTTKVKDLEVELESTKQKSKETLQQAILIERERFTQMQWEMEELRQKSLEMELKLNPNQDEKQITETTNQLAEEEKDAMLQELNATKEQLNSISKRYEELELKSKADIKVLVKEVKSLRKSQKELKQEVGQSLSEKAEAEVQLVQERQIIKHVRNAREKLLNKCRLLHNHLLECSVNLSTDDEN-LIKDSSFVQEALDLLTTSDNXXXXXXXXXXXXXXXEGSATGNDDIQLNNHYNSRTDDELRKIIAGIFTENANLKKEVNSHLRHKLKCD 2024 LLEERRCSLEEW+TKLLSDID+SR VASFLELEAAARS+FQ+ ++ +SE + N+T+ S + S+ S AG SSV SDYGSDTAYE S+LGTPR+GRDD+SE+G+ DLTLDED+T IEK+VKYGISNIDEGLFMGQ ILEQLE PRH+ A ++N + NGN +S +A N +ELFSE AKV H RKLS+ES GSD S +RG DMS GIPNSS +G DLPG++ V +G++ +S+GDT++VLPLDQR+K+NR+L TMQR+L TAKTDMEDL+ RLNQEIA K +L TKVKDLEVELE+TKQK+KE LQQAILIERERFTQMQW MEELR++SLEME+KL + T + ++ D +L+ L+ATKEQL +SK+Y ELE KSKAD+KVLVKEVKSLR SQ +LK+E+ +S+ E +E E L+ ER+ + AR LL KCR+L N L EC+V+L + E I +SS +A + LTTSD+++ +LL E + L K+ GSA N D + DDE+RKIIA +F +N L+K+ N RH LK D Sbjct: 126 LLEERRCSLEEWITKLLSDIDISRCAAVASFLELEAAARSSFQDASQQNSETDPDSNNTVYSVQSPLQSSLSLFAGSSSVASDYGSDTAYEPSDLGTPRIGRDDNSEVGTDDLTLDEDMTNPIEKLVKYGISNIDEGLFMGQTILEQLEGLPRHKANARHVNYAAEKVKNNGNVYDSSLLANNTMELFSEPGHAKVVAHVRKLSSESVGSDGSSIRGSDMSNFGIPNSSGDGSHDLPGSALVSRETDIMGHTKLKSTGDTQLVLPLDQRNKLNRILSTMQRRLGTAKTDMEDLIVRLNQEIAAKDFLATKVKDLEVELETTKQKNKENLQQAILIERERFTQMQWNMEELRRQSLEMEIKLKSELGRNSYQDLTKESIVQQNDVLLENLDATKEQLEILSKQYGELEAKSKADVKVLVKEVKSLRNSQTKLKKELSESIKEHSETEKLLLHEREKREQAEVARRILLEKCRVLFNQLQECNVSLPYEYEGRTIVNSSSSTDAFNQLTTSDDQMDILLAEVENLEKDYGSAACNVDKTNDIKDGVICDDEVRKIIADLFIDNVRLRKQTNRVTRHALKLD 704
BLAST of g.arboreum_cottongen_reftransV1_0006389 vs. ExPASy TrEMBL
Match: A0A072V2N1_MEDTR (Phox (PX) domain protein OS=Medicago truncatula GN=MTR_3g106770 PE=4 SV=1) HSP 1 Score: 578.556 bits (1490), Expect = 0.000e+0 Identity = 326/580 (56.21%), Postives = 409/580 (70.52%), Query Frame = -2 Query: 300 LLEERRCSLEEWMTKLLSDIDLSRSVTVASFLELEAAARSAFQEVNKCSSEPNVAGNSTISSNEIHPSSNTSHIAGCSSVTSDYGSDTAYETSELGTPRLGRDDSSEIGSGDLTLDEDLTGSIEKIVKYGISNIDEGLFMGQAILEQLEDFPRHRTLAINMNSTSGNDIYNGNGSRASFVAGNGLELFSELEPAKVAGHARKLSTESFGSDVSFLRGGDMSICGIPNSSVNGFVDLPGTSEVLNTMGSLGNSDPQSSGDTKIVLPLDQRHKMNRVLLTMQRKLATAKTDMEDLVARLNQEIAVKGYLTTKVKDLEVELESTKQKSKETLQQAILIERERFTQMQWEMEELRQKSLEMELKLNPNQDEKQITETTNQLAEEEKDAMLQELNATKEQLNSISKRYEELELKSKADIKVLVKEVKSLRKSQKELKQEVGQSLSEKAEAEVQLVQERQIIKHVRNAREKLLNKCRLLHNHLLECSVNLSTDDENLIKDSSFVQ-----EALDLLTTSDNXXXXXXXXXXXXXXXEGSATGNDDIQLNNHYNSRTDDELRKIIAGIFTENANLKKEVNSHLRHKL 2024 LLEERR SLEEW+TKLLSDID+SR VASF ELE AARS+FQ+ ++ +S + N+ S + S S AG SSV SDYGSDT Y+ SE+GTPR+G+DD+SE+G+ DLTLDED T IEK+VKYGISNIDEGLFMGQ ILEQLE PRH+ A + N+ +G D NGN +S + N +ELFS+ AKV GH RKLS ES GSD S +RG D+S GIPNSS +G VDLPG++ V +G++ +SSGD ++VLPLDQR+K+NR+L TMQR+L TAKTDMEDL+ RLNQEIA K +LTTKVKDLEVELE++KQK+KE LQQAILIERERFTQMQW+MEELR+KSLEME+KL + T + ++ D +LQ+L+A +EQL +SK+Y ELE KSKADIKVLVKEVKSLR SQ ELK+E+ +S+ EK EAE L+ ER+ + A K L KC LL L ECSV L +DE D +F+Q +A + L TSD++I +LL E + L K+ GSA N D + DE+RKII+ +F +N L+K+ N RH L Sbjct: 8 LLEERRRSLEEWITKLLSDIDISRCAPVASFFELETAARSSFQDASQQNSVKDPDSNNRDYSVQSSLHSGLSLTAGSSSVASDYGSDTPYDASEVGTPRIGQDDNSEVGTDDLTLDEDTTNPIEKLVKYGISNIDEGLFMGQTILEQLEGLPRHKVNARHGNNVTGKDRSNGNSYDSSLLGNNTMELFSQPGHAKVLGHIRKLSNESVGSDGSSIRGSDISNFGIPNSSGDGSVDLPGSASVSRETDIVGHTKLKSSGDAQLVLPLDQRNKLNRILSTMQRRLVTAKTDMEDLIVRLNQEIAAKDFLTTKVKDLEVELETSKQKNKENLQQAILIERERFTQMQWDMEELRRKSLEMEMKLKSESGGNVGQDLTKESIVQQNDVLLQDLDAAREQLEILSKQYGELEAKSKADIKVLVKEVKSLRSSQTELKKELSESIKEKYEAEKLLLHEREKSEQAEIAWRKQLEKCGLLLKQLQECSVELPYEDE----DRTFLQSSSSTDAFNKLKTSDDQIDILLAEVENLEKDAGSAASNVDKTNDIKDGVICGDEMRKIISDLFLDNVRLRKQTNRVTRHML 583 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006389 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0006389 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006389 ID=g.arboreum_cottongen_reftransV1_0006389; Name=g.arboreum_cottongen_reftransV1_0006389; organism=Gossypium arboreum; type=contig; length=2025bpback to top |