g.arboreum_cottongen_reftransV1_0004644, g.arboreum_cottongen_reftransV1_0004644 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0A0LAS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736760 PE=4 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 8.054e-21 Identity = 58/133 (43.61%), Postives = 76/133 (57.14%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTPWQIQGPYGGTKEM 399 AVTNFEPS+Y E+ SE++ G+ N+++DLNLGIAPP S+ + E+ HS + V A ENS S +R A + +WNV+N SFFPV RERA E R+ V S WQI G GT + Sbjct: 300 AVTNFEPSSYVAEMASENDIGENNQIIDLNLGIAPPNLSDARNESIGMFGNGIHHSSQEVLVDRRAMPENSVSTAIRSSQPYSSAVPSNYHSSWNVSNSSFFPVSRERATEMRMGVGSWEWQIHGHPSGTTSV 432
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A090ATP3_NELNU (APETALA2 protein OS=Nelumbo nucifera PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.535e-20 Identity = 61/135 (45.19%), Postives = 74/135 (54.81%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDST-----PWQIQGPYGGT 390 AVTNFEPS YEGE+ SE+E G + LDLNLGI+PP + K NE N +P + AR EN S T+ QP+ G A +H P W PS+FP Y ER EKR+EV S WQ+ G G T Sbjct: 321 AVTNFEPSNYEGEISSEAEIGGSGQNLDLNLGISPPAFVSGSKGNE---NIGLNCGPCDMPDSRRARMENPPSMTVGGQPTHGLAMVSEHPPIWTGVYPSYFPNYEERMAEKRVEVGSPGLSHWSWQMHGHSGAT 452
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: M5WLY2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021782mg PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.012e-20 Identity = 65/137 (47.45%), Postives = 77/137 (56.20%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHS--YDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDST-----PWQIQGPYGGT 390 AVTNFEPSTYEGE+ISE+ N D + LDLNLGI+PP N QKE E F HS YDG +G R E++ +ATM P G +H P WN PS F +ERA EKRI + S WQ+ G T Sbjct: 272 AVTNFEPSTYEGEMISEAGNEDGDHNLDLNLGISPPSFGNCQKEVEGHLQF---HSGPYDG---HNGKRMEHNVNATMSDPPFKGLVMTSQHPPLWNGVYPSCFS-NQERATEKRIALGSQGPPNWAWQMHGQVSAT 401
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0E3Z420_ROSCH (Putative RAP2-1 protein OS=Rosa chinensis PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 8.308e-18 Identity = 62/132 (46.97%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHS--YDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDST-----PWQIQG 375 AVTNFE STYEGE+IS++ N D N LDLNLGI+PP N QK+ E F HS Y+G R +A+ATM P G +H P WN PSF P +ERAIEKRI + S WQ+ G Sbjct: 264 AVTNFEASTYEGEMISDAVNEDGNHNLDLNLGISPPSFGNGQKQGEGHLQF---HSGPYEGQN-GKNMRMVPNANATMTAPPFRGVIMTSEHPPLWNGVYPSFLP-NQERAIEKRIALGSQGPPNWAWQMHG 390
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0A0L210_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G292470 PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.161e-17 Identity = 76/196 (38.78%), Postives = 101/196 (51.53%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENS---SNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP---WQ-IQGPYGGTKEM-XXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPST-PHFYCRT 561 AVTNF+ S+YE EL ESEN D + DLNLGIAPPC S QK+N N SN + + E AS +R PS ++ P+FFP Y+ERA+EK++EV+S P W+ I PYGG + +A+S S+S + + +P FL HH PP I +T HFYC+T Sbjct: 275 AVTNFDQSSYEMELAFESENQDMGDI-DLNLGIAPPCPSEDQKDNLNGCAPSNLCNLNKSNSERSEFIMLAEKHASMAIRANPSF-------------LSPPNFFPTYQERAMEKKMEVESLPNCCWRPISVPYGGATSVPFFSTAASSGFPSNSPAAVVPPPSPRHLLPLPPFLHHHIPPSIPATNTVTHFYCKT 456 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0004644 ID=g.arboreum_cottongen_reftransV1_0004644; Name=g.arboreum_cottongen_reftransV1_0004644; organism=Gossypium arboreum; type=contig; length=803bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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