g.arboreum_cottongen_reftransV1_0004644, g.arboreum_cottongen_reftransV1_0004644 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0004644
Unique Nameg.arboreum_cottongen_reftransV1_0004644
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length803
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr2chromosomeg.arboreum_cottongen_reftransV1_0004644:1..803 .
Chr2:69176359..69177443 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0A0LAS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736760 PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.054e-21
Identity = 58/133 (43.61%), Postives = 76/133 (57.14%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTPWQIQGPYGGTKEM 399
            AVTNFEPS+Y  E+ SE++ G+ N+++DLNLGIAPP  S+ + E+         HS   + V   A  ENS S  +R       A    +  +WNV+N SFFPV RERA E R+ V S  WQI G   GT  +
Sbjct:  300 AVTNFEPSSYVAEMASENDIGENNQIIDLNLGIAPPNLSDARNESIGMFGNGIHHSSQEVLVDRRAMPENSVSTAIRSSQPYSSAVPSNYHSSWNVSNSSFFPVSRERATEMRMGVGSWEWQIHGHPSGTTSV 432          
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A090ATP3_NELNU (APETALA2 protein OS=Nelumbo nucifera PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.535e-20
Identity = 61/135 (45.19%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDST-----PWQIQGPYGGT 390
            AVTNFEPS YEGE+ SE+E G   + LDLNLGI+PP   +  K NE   N         +P +  AR EN  S T+  QP+ G A   +H P W    PS+FP Y ER  EKR+EV S       WQ+ G  G T
Sbjct:  321 AVTNFEPSNYEGEISSEAEIGGSGQNLDLNLGISPPAFVSGSKGNE---NIGLNCGPCDMPDSRRARMENPPSMTVGGQPTHGLAMVSEHPPIWTGVYPSYFPNYEERMAEKRVEVGSPGLSHWSWQMHGHSGAT 452          
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: M5WLY2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021782mg PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.012e-20
Identity = 65/137 (47.45%), Postives = 77/137 (56.20%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHS--YDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDST-----PWQIQGPYGGT 390
            AVTNFEPSTYEGE+ISE+ N D +  LDLNLGI+PP   N QKE E    F   HS  YDG    +G R E++ +ATM   P  G     +H P WN   PS F   +ERA EKRI + S       WQ+ G    T
Sbjct:  272 AVTNFEPSTYEGEMISEAGNEDGDHNLDLNLGISPPSFGNCQKEVEGHLQF---HSGPYDG---HNGKRMEHNVNATMSDPPFKGLVMTSQHPPLWNGVYPSCFS-NQERATEKRIALGSQGPPNWAWQMHGQVSAT 401          
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0E3Z420_ROSCH (Putative RAP2-1 protein OS=Rosa chinensis PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.308e-18
Identity = 62/132 (46.97%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHS--YDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDST-----PWQIQG 375
            AVTNFE STYEGE+IS++ N D N  LDLNLGI+PP   N QK+ E    F   HS  Y+G       R   +A+ATM   P  G     +H P WN   PSF P  +ERAIEKRI + S       WQ+ G
Sbjct:  264 AVTNFEASTYEGEMISDAVNEDGNHNLDLNLGISPPSFGNGQKQGEGHLQF---HSGPYEGQN-GKNMRMVPNANATMTAPPFRGVIMTSEHPPLWNGVYPSFLP-NQERAIEKRIALGSQGPPNWAWQMHG 390          
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0A0L210_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G292470 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.161e-17
Identity = 76/196 (38.78%), Postives = 101/196 (51.53%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENS---SNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP---WQ-IQGPYGGTKEM-XXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPST-PHFYCRT 561
            AVTNF+ S+YE EL  ESEN D   + DLNLGIAPPC S  QK+N N    SN    +  +          E  AS  +R  PS              ++ P+FFP Y+ERA+EK++EV+S P   W+ I  PYGG   +     +A+S   S+S        + +  +P   FL HH PP I   +T  HFYC+T
Sbjct:  275 AVTNFDQSSYEMELAFESENQDMGDI-DLNLGIAPPCPSEDQKDNLNGCAPSNLCNLNKSNSERSEFIMLAEKHASMAIRANPSF-------------LSPPNFFPTYQERAMEKKMEVESLPNCCWRPISVPYGGATSVPFFSTAASSGFPSNSPAAVVPPPSPRHLLPLPPFLHHHIPPSIPATNTVTHFYCKT 456          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A0LAS9_CUCSA8.054e-2143.61Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
A0A090ATP3_NELNU2.535e-2045.19APETALA2 protein OS=Nelumbo nucifera PE=2 SV=1[more]
M5WLY2_PRUPE7.012e-2047.45Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A0E3Z420_ROSCH8.308e-1846.97Putative RAP2-1 protein OS=Rosa chinensis PE=2 SV=... [more]
A0A0A0L210_CUCSA1.161e-1738.78Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32467:SF28SUBFAMILY NOT NAMEDcoord: 1..161
IPR031112AP2-like ethylene-responsive transcription factorPANTHERPTHR32467FAMILY NOT NAMEDcoord: 1..161

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0004644 ID=g.arboreum_cottongen_reftransV1_0004644; Name=g.arboreum_cottongen_reftransV1_0004644; organism=Gossypium arboreum; type=contig; length=803bp
GCGGTCACCAACTTTGAGCCAAGCACCTACGAGGGGGAACTAATCTCCGA
ATCTGAAAACGGAGACCAGAATCGAGTTCTTGACTTGAACTTGGGCATAG
CACCCCCTTGTACGTCCAATCTCCAAAAGGAGAATGAAAATTCAAGCAAC
TTTCCTTTCCAGCACAGCTATGATGGCTTGCCTGTTGCGAGTGGAGCAAG
GTTCGAGAACTCTGCTTCGGCAACAATGAGAGTTCAACCTAGTCTTGGCC
AAGCAACAGCATTCAAGCACGTTCCGAATTGGAATGTTGCAAACCCCAGT
TTCTTTCCAGTTTATAGGGAAAGAGCAATAGAGAAGAGGATAGAAGTAGA
TTCCACACCATGGCAAATCCAAGGTCCTTATGGTGGAACAAAAGAAATGT
CACTCTTCCCTAGTGCAGCATCATCAGGATTCTCATCTTCAATAATTACT
TCACCATCAGCTGCTGCTGGCCAACTCCGAGTTCCCAACGCAACTTTCCT
CCAACACCATTTCCCCCCGGTGATCATGAACCCGAGCACCCCCCATTTCT
ACTGCAGAACCGAAAGGTAGCTGATTACCATGCCACCCCCATCTTATATT
ATCTGTAGCTAAATCGATGAAAAAAAGAATTCGAGGGCGTACCGAAATGC
CGGTATTTAAGAAGGCTGGGCTAGGCTACTTGACTGATCATATTTATTGT
TGTAAAGCTCATCAAAGCTACTTAAGCTAATGTATTATATGTGGTTGAAA
TGAACAACATTTGGTCAATTAATTAGACTTGGTTTGAAAGTGACTTCTTG
TTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR031112AP2-like_transcript_factor
Vocabulary: Biological Process
TermDefinition
GO:0007275multicellular organism development
GO:0006355regulation of DNA-templated transcription
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity