g.arboreum_cottongen_reftransV1_0004644, g.arboreum_cottongen_reftransV1_0004644 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0004644
Unique Nameg.arboreum_cottongen_reftransV1_0004644
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length803
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr2chromosomeg.arboreum_cottongen_reftransV1_0004644:1..803 .
Chr2:69176359..69177443 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0D2RCE5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G251500 PE=4 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.667e-34
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGAR 201
            AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQ  YDGLPVASGAR
Sbjct:  293 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQRGYDGLPVASGAR 359          
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A067K9U1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16454 PE=4 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.189e-33
Identity = 94/181 (51.93%), Postives = 114/181 (62.98%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNP 534
            AVTNFEPSTYEG++ISE+ NGD N+ LDLNLGIAPP  S  QK N     F FQ S+DG  +  G    NSASAT + +       A +    W   + +FFP+ +ERAI+KR+EVDS P   WQ QGPYGG   + L+ +AASSGFS S IT PSAA+GQ   PN+  L  HF P    P
Sbjct:  269 AVTNFEPSTYEGQIISEANNGDGNQNLDLNLGIAPPDISESQKINREMDTFHFQSSWDGRSIDRGPLIINSASATFKDELPYDPPMAPEPPALWGGLDTNFFPICKERAIDKRMEVDSLPNWTWQSQGPYGGANPLPLYSTAASSGFSPSTITVPSAASGQFHFPNSAILHRHFSPFRHQP 449          
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: I1JPI9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.389e-32
Identity = 90/193 (46.63%), Postives = 115/193 (59.59%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKEN--ENSSNFPFQHSYDGLPVASGARFENSASATMRVQPS-LGQATAFKHVPN-WNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPSTPH-FYC 555
            AVTNFEPS YEGE+IS+S+N D  + LDLNLG+APP  S+ Q +N   N S     HS+D +P+     FE+SAS ++ VQPS  G + A    P+ WN +N  FFP+Y E AIEKR+E    P   WQ++GPYGG       P + ++         PSAA  Q+R PN TFL  HFPP I N  T   F+C
Sbjct:  269 AVTNFEPSFYEGEVISQSDNEDNKQSLDLNLGLAPPSYSDGQIKNTPSNGSGMITPHSWDNIPLDKRVMFEHSASRSLTVQPSHHGFSVASGQHPSVWNGSN--FFPIYEETAIEKRMEAAPVPNWAWQVKGPYGGA--TLTPPLSTAASSGFPSTILPSAADTQIRFPNMTFLHSHFPPSITNSGTISPFFC 457          
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: V7D0N2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G174400g PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.862e-31
Identity = 87/186 (46.77%), Postives = 108/186 (58.06%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKEN--ENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPN-WNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPST 540
            AVTNFEPS YEGE+IS+S+N D  + LDLNLGIAPP  S+ Q +N   N S       +D  PV     FE+S S ++ VQPS G +    H P+ WN +N  FFP+Y E AIEK++E    P   WQ+QGPYGG       P + ++         PSAA  Q+  PN TFL  HFPP I N ST
Sbjct:  270 AVTNFEPSIYEGEVISQSDNEDGKQNLDLNLGIAPPSYSDSQIKNTPSNGSGLKTPPCWDDSPVEKRFMFEHSGSRSLNVQPSHGISRVSGHHPSTWNGSN--FFPIYEETAIEKKLEAGPMPSWAWQVQGPYGGAS--LTPPFSTAASSGFPSTIIPSAADTQIHFPNMTFLHSHFPPSITNSST 451          
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: G7L1P7_MEDTR (AP2 domain transcription factor OS=Medicago truncatula GN=MTR_7g100590 PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.132e-29
Identity = 84/194 (43.30%), Postives = 110/194 (56.70%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKEN--ENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHV-PNWNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPS-TPHFYCRT 561
            AVTNFE S+YEGEL S+++N D  + LDLNLGIAPP  S++Q  N   N S    Q ++D +PV     FE+S S ++ VQ S G   A +H  P W+  N  +FPV +ERAIE R+E    P   WQ+Q PY     +        S  +SS   S +AA  Q+  PN T+L  HFP  + N S  P FYCR+
Sbjct:  283 AVTNFEASSYEGELTSQADNDDIKQNLDLNLGIAPPSNSDVQMMNMHHNGSGLQVQRNWDDMPVDKSVMFEDSGSRSLNVQSSYGFPIASEHQPPVWSGTN--YFPVCKERAIENRMESAPVPNWAWQLQSPYNNGSTL---ILPNFSAAASSGFPSTTAADSQIHFPNITYLHPHFPTPVTNSSPIPSFYCRS 471          
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: K7MYY3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.673e-28
Identity = 86/193 (44.56%), Postives = 110/193 (56.99%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKEN--ENSSNFPFQHSYDGLPVASGARFENSASATMRVQ-PSLGQATAFKHVPN-WNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPST--PHFY 552
            AVTNFEPS YEGE+IS+S+N D  + LDLNLGIAPP  S+ Q +N   N S      S+D +P+     FE+S S +  +Q P  G + A    P+ WN +N  FFP+Y E AIEKR+E    P   WQ+QGPYG  +     P + ++         PSAA  Q+R PN TFL  HFP  I N  T  P F+
Sbjct:  298 AVTNFEPSLYEGEVISQSDNEDTKQSLDLNLGIAPPSYSDGQIKNTPSNGSGMIAPQSWDDIPLDKRVMFEHSGSRSRTIQPPHHGFSIASGQHPSVWNGSN--FFPIYEETAIEKRMEAAPVPNWAWQVQGPYG--RATLAPPFSTAASSGFPSTIIPSAADTQIRFPNMTFLHSHFPSSITNSGTISPFFF 486          
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: K7MYY2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.955e-28
Identity = 86/193 (44.56%), Postives = 110/193 (56.99%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKEN--ENSSNFPFQHSYDGLPVASGARFENSASATMRVQ-PSLGQATAFKHVPN-WNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPST--PHFY 552
            AVTNFEPS YEGE+IS+S+N D  + LDLNLGIAPP  S+ Q +N   N S      S+D +P+     FE+S S +  +Q P  G + A    P+ WN +N  FFP+Y E AIEKR+E    P   WQ+QGPYG  +     P + ++         PSAA  Q+R PN TFL  HFP  I N  T  P F+
Sbjct:  304 AVTNFEPSLYEGEVISQSDNEDTKQSLDLNLGIAPPSYSDGQIKNTPSNGSGMIAPQSWDDIPLDKRVMFEHSGSRSRTIQPPHHGFSIASGQHPSVWNGSN--FFPIYEETAIEKRMEAAPVPNWAWQVQGPYG--RATLAPPFSTAASSGFPSTIIPSAADTQIRFPNMTFLHSHFPSSITNSGTISPFFF 492          
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: I1NA54_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.084e-28
Identity = 86/193 (44.56%), Postives = 110/193 (56.99%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKEN--ENSSNFPFQHSYDGLPVASGARFENSASATMRVQ-PSLGQATAFKHVPN-WNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPST--PHFY 552
            AVTNFEPS YEGE+IS+S+N D  + LDLNLGIAPP  S+ Q +N   N S      S+D +P+     FE+S S +  +Q P  G + A    P+ WN +N  FFP+Y E AIEKR+E    P   WQ+QGPYG  +     P + ++         PSAA  Q+R PN TFL  HFP  I N  T  P F+
Sbjct:  268 AVTNFEPSLYEGEVISQSDNEDTKQSLDLNLGIAPPSYSDGQIKNTPSNGSGMIAPQSWDDIPLDKRVMFEHSGSRSRTIQPPHHGFSIASGQHPSVWNGSN--FFPIYEETAIEKRMEAAPVPNWAWQVQGPYG--RATLAPPFSTAASSGFPSTIIPSAADTQIRFPNMTFLHSHFPSSITNSGTISPFFF 456          
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: D7TQA3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g03180 PE=4 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.939e-27
Identity = 88/202 (43.56%), Postives = 120/202 (59.41%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNL------GIAPPCT----SNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPS--TPHFYCRT 561
            AVTNFEPSTYEGE+I  ++NG  ++ L+L        G+AP  +    S+    N  ++  P +  +D +P   G R ENS SAT+ V PS G   A  H P+W+  N   FP+Y+ERAIEKRIEVD  P   WQ  GPYGG     LF +AASSGF SS+ T+  A   Q  + + T LQH++ P + N +  +P++YCR+
Sbjct:  295 AVTNFEPSTYEGEIIFPADNGGSSQNLNLLPNLDLHLGVAPYFSDEPMSDEPVRNSKANGSPSRQGHDAMPDDRGERIENSTSATLGVHPSYGLVMASDHPPSWSGVNSRVFPIYKERAIEKRIEVDHLPNWAWQNHGPYGGATP-PLFSTAASSGFLSSVTTASPANPTQGSLQSTTVLQHYYSPSLTNTTSISPYYYCRS 495          
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: W9RE03_9ROSA (Floral homeotic protein APETALA 2 OS=Morus notabilis GN=L484_003848 PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.096e-22
Identity = 78/194 (40.21%), Postives = 100/194 (51.55%), Query Frame = 1
Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP---WQIQG---PYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPST-PHFYCRT 561
            AVTNFEP+ Y+ E++SE+E    N+ LDLNLGIAP   SN  KEN  +S F  +       V    R EN ++A  R +   G   A +H       N SFFP   ERA E+ ++VDS P   WQIQG          +    +++     S+     SAA  QL  PN   L HHFPP I N +  PHFYCR+
Sbjct:  260 AVTNFEPALYDVEMMSEAECEGGNQNLDLNLGIAPLSLSNGPKENVETSGFYLEQ------VHMRERIENFSTA--RAKMPHGSRIASEHCSIIGGMNASFFPNDMERATERGVDVDSLPNWAWQIQGRAAAPPVPAPLFCTAASSGFPSPSATSLPSSAANSQLHFPNLPILHHHFPPSIANTTNLPHFYCRS 445          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2RCE5_GOSRA1.667e-3497.01Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067K9U1_JATCU9.189e-3351.93Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
I1JPI9_SOYBN1.389e-3246.63Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
V7D0N2_PHAVU1.862e-3146.77Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
G7L1P7_MEDTR3.132e-2943.30AP2 domain transcription factor OS=Medicago trunca... [more]
K7MYY3_SOYBN1.673e-2844.56Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7MYY2_SOYBN1.955e-2844.56Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1NA54_SOYBN2.084e-2844.56Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
D7TQA3_VITVI4.939e-2743.56Putative uncharacterized protein OS=Vitis vinifera... [more]
W9RE03_9ROSA1.096e-2240.21Floral homeotic protein APETALA 2 OS=Morus notabil... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32467:SF28SUBFAMILY NOT NAMEDcoord: 1..161
IPR031112AP2-like ethylene-responsive transcription factorPANTHERPTHR32467FAMILY NOT NAMEDcoord: 1..161

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0004644 ID=g.arboreum_cottongen_reftransV1_0004644; Name=g.arboreum_cottongen_reftransV1_0004644; organism=Gossypium arboreum; type=contig; length=803bp
GCGGTCACCAACTTTGAGCCAAGCACCTACGAGGGGGAACTAATCTCCGA
ATCTGAAAACGGAGACCAGAATCGAGTTCTTGACTTGAACTTGGGCATAG
CACCCCCTTGTACGTCCAATCTCCAAAAGGAGAATGAAAATTCAAGCAAC
TTTCCTTTCCAGCACAGCTATGATGGCTTGCCTGTTGCGAGTGGAGCAAG
GTTCGAGAACTCTGCTTCGGCAACAATGAGAGTTCAACCTAGTCTTGGCC
AAGCAACAGCATTCAAGCACGTTCCGAATTGGAATGTTGCAAACCCCAGT
TTCTTTCCAGTTTATAGGGAAAGAGCAATAGAGAAGAGGATAGAAGTAGA
TTCCACACCATGGCAAATCCAAGGTCCTTATGGTGGAACAAAAGAAATGT
CACTCTTCCCTAGTGCAGCATCATCAGGATTCTCATCTTCAATAATTACT
TCACCATCAGCTGCTGCTGGCCAACTCCGAGTTCCCAACGCAACTTTCCT
CCAACACCATTTCCCCCCGGTGATCATGAACCCGAGCACCCCCCATTTCT
ACTGCAGAACCGAAAGGTAGCTGATTACCATGCCACCCCCATCTTATATT
ATCTGTAGCTAAATCGATGAAAAAAAGAATTCGAGGGCGTACCGAAATGC
CGGTATTTAAGAAGGCTGGGCTAGGCTACTTGACTGATCATATTTATTGT
TGTAAAGCTCATCAAAGCTACTTAAGCTAATGTATTATATGTGGTTGAAA
TGAACAACATTTGGTCAATTAATTAGACTTGGTTTGAAAGTGACTTCTTG
TTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR031112AP2-like_transcript_factor
Vocabulary: Biological Process
TermDefinition
GO:0007275multicellular organism development
GO:0006355regulation of DNA-templated transcription
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity