g.arboreum_cottongen_reftransV1_0006124, g.arboreum_cottongen_reftransV1_0006124 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006124
Unique Nameg.arboreum_cottongen_reftransV1_0006124
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr2chromosomeg.arboreum_cottongen_reftransV1_0006124:1..299 .
Chr2:80084434..80084732 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: U5FY68_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0010s059502g PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.959e-47
Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVHSANPDV+VILSGL+YD DLSF++NRP  L+FSGK+VFEVHWY F++G+ W  GN NQVCGRV  +MMR SGFL+DQG+PLFVSE+GVDQRGTNVN
Sbjct:  230 EAVHSANPDVIVILSGLNYDKDLSFLRNRPMNLTFSGKIVFEVHWYSFTDGEAWKNGNSNQVCGRVVDNMMRVSGFLLDQGWPLFVSEFGVDQRGTNVN 328
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: A0A072TV67_MEDTR (Glycoside hydrolase family 5 protein OS=Medicago truncatula GN=MTR_8g089775 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.476e-47
Identity = 69/99 (69.70%), Postives = 85/99 (85.86%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVH+ANP++L+ILSGL++D DLS+I  RP  L+F GKLVFE HWY F++GQ WV+GNPNQVCG+VA +M R  G+LVDQG+PLFVSE+GVD RGTNVN
Sbjct:    6 EAVHAANPNILIILSGLNFDKDLSYIAKRPVNLTFKGKLVFEAHWYAFTDGQAWVSGNPNQVCGQVAGNMKRMFGYLVDQGWPLFVSEFGVDLRGTNVN 104
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BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: W9RKI9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027655 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.134e-46
Identity = 75/99 (75.76%), Postives = 89/99 (89.90%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVHSANPDVLVILSGLSYD+DLSF+ NR   L+FSGKLVFE+HWYGFS+G  WV+GNPNQVC  VA ++ R++GFL+D+G+PLFVSE+GVDQRGTNVN
Sbjct:  234 EAVHSANPDVLVILSGLSYDTDLSFLSNRAVDLTFSGKLVFELHWYGFSDGSAWVSGNPNQVCSMVANNVKRKAGFLLDKGWPLFVSEFGVDQRGTNVN 332
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: K7L6E4_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.279e-46
Identity = 73/99 (73.74%), Postives = 86/99 (86.87%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EA+H+ANPDVLVILSGL+YD DLSFIQ RP  L+F GKLV+E HWY F++GQ WV GNPNQVCG+VA +MMR SGFLV+QG+PLF+SE+G D RGTNVN
Sbjct:  135 EAIHAANPDVLVILSGLNYDKDLSFIQKRPVSLTFKGKLVYEAHWYAFTDGQAWVNGNPNQVCGQVAGNMMRTSGFLVNQGWPLFISEFGGDLRGTNVN 233
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: M5XEI2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003807mg PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.866e-46
Identity = 74/99 (74.75%), Postives = 88/99 (88.89%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVHSANPDVLVILSGLSYD DLSF+ +RP  L+FSGK V+EVHWYGFS+GQ W +GNPNQVCG V  +M R++GFL+++G+PLFVSE+GVDQRGTNVN
Sbjct:  233 EAVHSANPDVLVILSGLSYDKDLSFLADRPVSLTFSGKTVYEVHWYGFSDGQAWKSGNPNQVCGSVVNNMKRQAGFLLEKGFPLFVSEFGVDQRGTNVN 331
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: M0U9W6_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.999e-46
Identity = 71/99 (71.72%), Postives = 89/99 (89.90%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVHSANP+VLVILSGLS+D+DL ++  +P +L+F GKLVFE+HWY FS+GQ W  GNPNQVCGRVA ++MRR+GFL+DQG+PLF+SE+G+DQRGTNVN
Sbjct:  227 EAVHSANPNVLVILSGLSFDNDLGYLSKKPVELTFQGKLVFELHWYAFSDGQAWANGNPNQVCGRVAGNVMRRAGFLLDQGWPLFLSEFGLDQRGTNVN 325
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: M1AKP1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009602 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.071e-46
Identity = 72/99 (72.73%), Postives = 87/99 (87.88%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVH+ANPDVLVILSGL++D DLSF++ RP  L+FSGKLVFE+H Y F++G++W TGNPNQVCG+V  D+M R GFL+DQGYPLFVSE+G DQRGTNVN
Sbjct:    6 EAVHAANPDVLVILSGLNFDKDLSFLRQRPINLTFSGKLVFEIHRYSFTDGKSWETGNPNQVCGQVVNDIMSRGGFLLDQGYPLFVSEFGADQRGTNVN 104
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: A0A0B2PB07_GLYSO (Endoglucanase OS=Glycine soja GN=glysoja_010879 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.510e-46
Identity = 73/99 (73.74%), Postives = 87/99 (87.88%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EA+H+ANPDVLVILSGL++D DLSFIQNRP  L+F GKLV+E HWY F++GQ WV GNPNQVCG+VA +MMR SGFLV+QG+PLF+SE+G D RGTNVN
Sbjct:  148 EAIHAANPDVLVILSGLNFDKDLSFIQNRPVSLTFKGKLVYEAHWYAFTDGQAWVNGNPNQVCGQVAGNMMRTSGFLVNQGWPLFISEFGGDLRGTNVN 246
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: K7KQT2_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.226e-46
Identity = 73/99 (73.74%), Postives = 87/99 (87.88%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EA+H+ANPDVLVILSGL++D DLSFIQNRP  L+F GKLV+E HWY F++GQ WV GNPNQVCG+VA +MMR SGFLV+QG+PLF+SE+G D RGTNVN
Sbjct:  231 EAIHAANPDVLVILSGLNFDKDLSFIQNRPVSLTFKGKLVYEAHWYAFTDGQAWVNGNPNQVCGQVAGNMMRTSGFLVNQGWPLFISEFGGDLRGTNVN 329
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: A0A0B2QJJ3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_032397 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.311e-45
Identity = 72/99 (72.73%), Postives = 90/99 (90.91%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVH+ANPDVLVILSGL++D++LSFI+N   +LSF+GKLVFEVHWY FS+GQ W  GNPNQVCG+V +++MRR+GFL+DQG+PLFVSE+GVD RGT+VN
Sbjct:  148 EAVHAANPDVLVILSGLNFDTNLSFIRNEAVKLSFNGKLVFEVHWYSFSDGQAWTLGNPNQVCGQVTENVMRRAGFLLDQGWPLFVSEFGVDLRGTSVN 246
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
U5FY68_POPTR1.959e-4775.76Uncharacterized protein (Fragment) OS=Populus tric... [more]
A0A072TV67_MEDTR5.476e-4769.70Glycoside hydrolase family 5 protein OS=Medicago t... [more]
W9RKI9_9ROSA1.134e-4675.76Uncharacterized protein OS=Morus notabilis GN=L484... [more]
K7L6E4_SOYBN1.279e-4673.74Uncharacterized protein (Fragment) OS=Glycine max ... [more]
M5XEI2_PRUPE1.866e-4674.75Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
M0U9W6_MUSAM1.999e-4671.72Uncharacterized protein OS=Musa acuminata subsp. m... [more]
M1AKP1_SOLTU3.071e-4672.73Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A0A0B2PB07_GLYSO3.510e-4673.74Endoglucanase OS=Glycine soja GN=glysoja_010879 PE... [more]
K7KQT2_SOYBN5.226e-4673.74Uncharacterized protein OS=Glycine max PE=3 SV=1[more]
A0A0B2QJJ3_GLYSO4.311e-4572.73Uncharacterized protein OS=Glycine soja GN=glysoja... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013781Glycoside hydrolase, catalytic domainGENE3D3.20.20.80coord: 6..79
e-value: 2.5E-10
score: 39.3
IPR001547Glycoside hydrolase, family 5PFAMPF00150Cellulasecoord: 9..79
e-value: 1.8E-5
score: 24.2
NoneNo IPR availablePANTHERPTHR31263FAMILY NOT NAMEDcoord: 1..83
NoneNo IPR availablePANTHERPTHR31263:SF0CELLULASE (GLYCOSYL HYDROLASE FAMILY 5) PROTEIN-RELATEDcoord: 1..83
IPR017853Glycoside hydrolase superfamilySUPERFAMILY51445(Trans)glycosidasescoord: 2..81

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006124 ID=g.arboreum_cottongen_reftransV1_0006124; Name=g.arboreum_cottongen_reftransV1_0006124; organism=Gossypium arboreum; type=contig; length=299bp
GGAAGCAGTTCACTCAGCAAACCCAGATGTTCTAGTTATACTTTCTGGGT
TGAGTTACGACAGTGACCTGTCATTCATCCAAAATCGACCAGCACAGCTC
AGTTTTAGTGGGAAACTAGTATTTGAGGTGCACTGGTATGGCTTTTCGAA
TGGGCAGACATGGGTAACTGGTAACCCAAACCAAGTGTGTGGCAGAGTGG
CGAAAGACATGATGAGGAGATCAGGGTTTTTGGTGGATCAAGGATATCCC
TTGTTTGTGAGCGAGTATGGGGTGGACCAAAGAGGAACCAATGTAAATG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR013781Glyco_hydro_catalytic_dom
IPR001547Glyco_hydro_5
IPR017853Glycoside_hydrolase_SF
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds