g.arboreum_cottongen_reftransV1_0010846, g.arboreum_cottongen_reftransV1_0010846 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010846
Unique Nameg.arboreum_cottongen_reftransV1_0010846
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length363
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr4chromosomeg.arboreum_cottongen_reftransV1_0010846:1..363 .
Chr4:135482029..135482391 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010846 vs. ExPASy TrEMBL
Match: D7LDK6_ARALL (Pentatricopeptide repeat-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_482072 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 6.535e-56
Identity = 96/121 (79.34%), Postives = 106/121 (87.60%), Query Frame = -1
Query:    1 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAVS 363
            LLSIY K+GR EEALDI REM   G+++DVVTYNALLGGYGKQGKYDEV+ +F EMK + V PNLLTYST+ID YSKGGLY EAM+VFREFK AGL+ADVVLYSALIDALCKNGLV SAVS
Sbjct:  450 LLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVS 570          

HSP 2 Score: 91.2781 bits (225), Expect = 1.524e-18
Identity = 44/120 (36.67%), Postives = 78/120 (65.00%), Query Frame = -1
Query:    7 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQG-KYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 363
            L+S Y + G  EEA+ +   M++ G+R ++VTYNA++   GK G ++ +V   FDEM+   V P+ +T+++++ V S+GGL++ A ++F E     ++ DV  Y+ L+DA+CK G ++ A
Sbjct:  274 LISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLA 393          

HSP 3 Score: 82.0333 bits (201), Expect = 2.388e-15
Identity = 39/114 (34.21%), Postives = 69/114 (60.53%), Query Frame = -1
Query:   22 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNG 363
            LL    K G+ + A +I  +M    +  +VV+Y+ ++ G+ K G++DE   LF EM+   ++ + ++Y+T++ +Y+K G  +EA+D+ RE    G+K DVV Y+AL+    K G
Sbjct:  380 LLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQG 493          

HSP 4 Score: 81.2629 bits (199), Expect = 3.774e-15
Identity = 40/120 (33.33%), Postives = 73/120 (60.83%), Query Frame = -1
Query:    4 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 363
            LL++ ++ G +E A ++  EM +  + +DV +YN LL    K G+ D    +  +M A+++ PN+++YST+ID ++K G +DEA+++F E ++  +  D V Y+ L+    K G  E A+
Sbjct:  345 LLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEAL 464          

HSP 5 Score: 68.9366 bits (167), Expect = 7.456e-11
Identity = 30/86 (34.88%), Postives = 54/86 (62.79%), Query Frame = -1
Query:  106 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMD 363
            L+  Y+K G ++EA+++ RE + +G+R DVV Y+AL+    K G      +L DEM  + +SPN++TY+++ID + +    + + D
Sbjct:  520 LIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSAD 605          
BLAST of g.arboreum_cottongen_reftransV1_0010846 vs. ExPASy TrEMBL
Match: R0HMT7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10022597mg PE=4 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.388e-55
Identity = 95/121 (78.51%), Postives = 106/121 (87.60%), Query Frame = -1
Query:    1 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAVS 363
            LLSIY K+GR EEALDI REM   G+++DVVTYNALLGGYGKQGKYDEV+ +F EMK + V PNLLTYST+ID YSKGGLY EAM++FREFK AGL+ADVVLYSALIDALCKNGLV SAVS
Sbjct:  459 LLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVVPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVS 579          

HSP 2 Score: 93.9745 bits (232), Expect = 1.922e-19
Identity = 45/120 (37.50%), Postives = 78/120 (65.00%), Query Frame = -1
Query:    7 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQG-KYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 363
            L+S Y + G  EEA+ +   M+D G+R ++VTYNA++   GK G ++ +V   FDEM+   V P+ +T+++++ V S+GGL++ A ++F E     ++ DV  Y+ L+DA+CK G ++ A
Sbjct:  283 LISAYGRSGLHEEAISVFSSMKDHGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQKNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLA 402          

HSP 3 Score: 83.5741 bits (205), Expect = 5.993e-16
Identity = 41/120 (34.17%), Postives = 74/120 (61.67%), Query Frame = -1
Query:    4 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 363
            LL++ ++ G +E A ++  EM +  + +DV +YN LL    K G+ D    +  +M A+++ PN+++YST+ID ++K G +DEA+++F E ++ G+  D V Y+ L+    K G  E A+
Sbjct:  354 LLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEAL 473          

HSP 4 Score: 81.2629 bits (199), Expect = 4.355e-15
Identity = 39/114 (34.21%), Postives = 69/114 (60.53%), Query Frame = -1
Query:   22 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNG 363
            LL    K G+ + A +I  +M    +  +VV+Y+ ++ G+ K G++DE   LF EM+   ++ + ++Y+T++ +Y+K G  +EA+D+ RE    G+K DVV Y+AL+    K G
Sbjct:  389 LLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQG 502          

HSP 5 Score: 69.3218 bits (168), Expect = 5.407e-11
Identity = 31/86 (36.05%), Postives = 54/86 (62.79%), Query Frame = -1
Query:  106 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMD 363
            L+  Y+K G ++EA++I RE + +G+R DVV Y+AL+    K G      +L DEM  + +SPN++TY+++ID + +    + + D
Sbjct:  529 LIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSAD 614          

HSP 6 Score: 64.3142 bits (155), Expect = 2.591e-9
Identity = 34/120 (28.33%), Postives = 63/120 (52.50%), Query Frame = -1
Query:    7 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGL-YDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 363
            ++S   + G+   A  I       G    V  ++AL+  YG+ G ++E  ++F  MK   + PNL+TY+ +ID   KGG+ + +    F E +  G++ D + +++L+    + GL E+A
Sbjct:  248 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFSSMKDHGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQKNGVQPDRITFNSLLAVCSRGGLWEAA 367          
BLAST of g.arboreum_cottongen_reftransV1_0010846 vs. ExPASy TrEMBL
Match: A0A087GMW4_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA6G083500 PE=4 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 8.614e-55
Identity = 94/121 (77.69%), Postives = 106/121 (87.60%), Query Frame = -1
Query:    1 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAVS 363
            LLSIY KLGR EEALD+ REM   G+++DVVTYNALLGGYGKQ KYDEV+ +F EMK + VSPNLLTYST+IDVYSKGGLY EAM++FREFK  GL+ADVVLYSALIDALCKNGLV SAV+
Sbjct:  392 LLSIYTKLGRSEEALDVFREMASVGIKKDVVTYNALLGGYGKQRKYDEVKNVFAEMKREHVSPNLLTYSTLIDVYSKGGLYKEAMEIFREFKRVGLRADVVLYSALIDALCKNGLVGSAVT 512          

HSP 2 Score: 95.1301 bits (235), Expect = 5.922e-20
Identity = 46/121 (38.02%), Postives = 82/121 (67.77%), Query Frame = -1
Query:    4 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQG-KYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 363
            L+S Y + G FEEA+ +   M++ G+R ++VTYNA++   GK G ++ +V A+FDEM+   V P+ +T+++++ V S+GGL++ A ++F E     ++ DV  Y+ L+DA+CK G ++ A+
Sbjct:  216 LISAYGRSGLFEEAIGVFNSMKNYGLRPNLVTYNAVIDACGKGGMEFKQVAAIFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMLNRRIEQDVFSYNTLLDAICKGGQMDLAL 336          

HSP 3 Score: 83.1889 bits (204), Expect = 7.997e-16
Identity = 41/107 (38.32%), Postives = 70/107 (65.42%), Query Frame = -1
Query:   43 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALI 363
            LL    K G+ + AL+I  +M    +  +VV+Y+ ++ G+ K G++DE   LFDEM+   ++ + ++Y+T++ +Y+K G  +EA+DVFRE    G+K DVV Y+AL+
Sbjct:  322 LLDAICKGGQMDLALEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFDEMRYLGIALDRVSYNTLLSIYTKLGRSEEALDVFREMASVGIKKDVVTYNALL 428          

HSP 4 Score: 80.4925 bits (197), Expect = 6.594e-15
Identity = 41/120 (34.17%), Postives = 74/120 (61.67%), Query Frame = -1
Query:    4 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 363
            LL++ ++ G +E A ++  EM +  + +DV +YN LL    K G+ D    +  +M A+++ PN+++YST+ID ++K G +DEA+++F E ++ G+  D V Y+ L+    K G  E A+
Sbjct:  287 LLAVCSRGGLWEAARNLFDEMLNRRIEQDVFSYNTLLDAICKGGQMDLALEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFDEMRYLGIALDRVSYNTLLSIYTKLGRSEEAL 406          

HSP 5 Score: 71.2478 bits (173), Expect = 9.913e-12
Identity = 34/111 (30.63%), Postives = 65/111 (58.56%), Query Frame = -1
Query:    1 FEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAVS 333
            F++   I  EM+ +G++ D +T+N+LL    + G ++  R LFDEM  +++  ++ +Y+T++D   KGG  D A+++  +     +  +VV YS +ID   K G  + A++
Sbjct:  262 FKQVAAIFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMLNRRIEQDVFSYNTLLDAICKGGQMDLALEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALN 372          

HSP 6 Score: 68.1662 bits (165), Expect = 1.113e-10
Identity = 35/120 (29.17%), Postives = 66/120 (55.00%), Query Frame = -1
Query:    7 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGL-YDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 363
            ++S   +LG+ E A  +       G    V  ++AL+  YG+ G ++E   +F+ MK   + PNL+TY+ +ID   KGG+ + +   +F E +  G++ D + +++L+    + GL E+A
Sbjct:  181 MISTLGRLGKVEMAKSVFEIALAGGYGNTVYAFSALISAYGRSGLFEEAIGVFNSMKNYGLRPNLVTYNAVIDACGKGGMEFKQVAAIFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAA 300          

HSP 7 Score: 65.4698 bits (158), Expect = 1.033e-9
Identity = 30/77 (38.96%), Postives = 50/77 (64.94%), Query Frame = -1
Query:  133 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSK 363
            L+ +Y+K G ++EA++I RE +  G+R DVV Y+AL+    K G       L DEM  + +SPN++TY+++ID + +
Sbjct:  462 LIDVYSKGGLYKEAMEIFREFKRVGLRADVVLYSALIDALCKNGLVGSAVTLIDEMTKEGISPNVVTYNSIIDAFGR 538          
BLAST of g.arboreum_cottongen_reftransV1_0010846 vs. ExPASy TrEMBL
Match: M5X9I1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001263mg PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.420e-54
Identity = 89/120 (74.17%), Postives = 108/120 (90.00%), Query Frame = -1
Query:    4 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 363
            LLS+Y KLGRFE+AL +C+EME  G+ +DVV+YNALLGGYGKQGKYD+ + ++++MK ++VSPN+LTYST+IDVYSKGGLY EAM VFREFK AGLKADVVLYS L++ALCKNGLVESAV
Sbjct:  403 LLSLYGKLGRFEDALKVCKEMESVGIAKDVVSYNALLGGYGKQGKYDDAKRMYNQMKEERVSPNILTYSTLIDVYSKGGLYMEAMKVFREFKQAGLKADVVLYSELVNALCKNGLVESAV 522          

HSP 2 Score: 81.6481 bits (200), Expect = 2.761e-15
Identity = 43/120 (35.83%), Postives = 72/120 (60.00%), Query Frame = -1
Query:    4 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 363
            LL++ ++ G +E A ++  EM D G+ +D+ TYN L+    K G+ D    +  EM ++ + PN++TYST+ID Y+K G  ++A+ +F E K+  +  D VLY+ L+    K G  E A+
Sbjct:  298 LLAVCSRGGLWEMARNLFSEMVDRGIDQDIYTYNTLIDAICKGGQMDLAYQIMSEMPSKNILPNVVTYSTIIDGYAKAGRLEDALSLFNEMKFLAIGLDRVLYNTLLSLYGKLGRFEDAL 417          

HSP 3 Score: 75.8702 bits (185), Expect = 2.843e-13
Identity = 39/120 (32.50%), Postives = 69/120 (57.50%), Query Frame = -1
Query:    7 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGL-YDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 363
            ++S   +LG+ E A ++ +   + G  + V TY+AL+  YG+ G  +E   +F+ MK   + PNL+TY+ +ID Y KGG+ +   +++F E    G + D + Y++L+    + GL E A
Sbjct:  192 MISTLGRLGKVELAKNVFQTAVNEGYGKTVYTYSALITAYGRNGYCEEAIRVFESMKDSGLKPNLVTYNAVIDAYGKGGVEFKRVVEIFNEMLRNGEQPDRITYNSLLAVCSRGGLWEMA 311          

HSP 4 Score: 72.0182 bits (175), Expect = 5.198e-12
Identity = 46/157 (29.30%), Postives = 72/157 (45.86%), Query Frame = -1
Query:    1 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGK------------------------------------YDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAVS 363
            L++ Y + G  EEA+ +   M+DSG++ ++VTYNA++  YGK G                                     ++  R LF EM  + +  ++ TY+T+ID   KGG  D A  +  E     +  +VV YS +ID   K G +E A+S
Sbjct:  227 LITAYGRNGYCEEAIRVFESMKDSGLKPNLVTYNAVIDAYGKGGVEFKRVVEIFNEMLRNGEQPDRITYNSLLAVCSRGGLWEMARNLFSEMVDRGIDQDIYTYNTLIDAICKGGQMDLAYQIMSEMPSKNILPNVVTYSTIIDGYAKAGRLEDALS 383          

HSP 5 Score: 70.0922 bits (170), Expect = 2.558e-11
Identity = 37/114 (32.46%), Postives = 66/114 (57.89%), Query Frame = -1
Query:   22 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNG 363
            L+    K G+ + A  I  EM    +  +VVTY+ ++ GY K G+ ++  +LF+EMK   +  + + Y+T++ +Y K G +++A+ V +E +  G+  DVV Y+AL+    K G
Sbjct:  333 LIDAICKGGQMDLAYQIMSEMPSKNILPNVVTYSTIIDGYAKAGRLEDALSLFNEMKFLAIGLDRVLYNTLLSLYGKLGRFEDALKVCKEMESVGIAKDVVSYNALLGGYGKQG 446          

HSP 6 Score: 61.2326 bits (147), Expect = 2.466e-8
Identity = 28/86 (32.56%), Postives = 51/86 (59.30%), Query Frame = -1
Query:  106 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMD 363
            L+ +Y+K G + EA+ + RE + +G++ DVV Y+ L+    K G  +    L DEM  + + PN++TY+++ID + +    + A D
Sbjct:  473 LIDVYSKGGLYMEAMKVFREFKQAGLKADVVLYSELVNALCKNGLVESAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECAAD 558          
BLAST of g.arboreum_cottongen_reftransV1_0010846 vs. ExPASy TrEMBL
Match: A0A0D6QYD1_ARACU (Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.884e-54
Identity = 89/121 (73.55%), Postives = 106/121 (87.60%), Query Frame = -1
Query:    1 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAVS 363
            L+SIYAKLGRFEEAL +C EME +G+ +D VTYNALLGGYGKQG+YD+V+ALF EMK + V+PN+LTYST+ID +SKGGL DEAM + +EFK +GLK DVVLYSALIDALCKNGLVE A+S
Sbjct:  414 LVSIYAKLGRFEEALAVCEEMERAGINKDAVTYNALLGGYGKQGRYDKVKALFQEMKTEAVAPNVLTYSTLIDTFSKGGLQDEAMQILKEFKHSGLKPDVVLYSALIDALCKNGLVEEALS 534          

HSP 2 Score: 92.8189 bits (229), Expect = 4.482e-19
Identity = 46/122 (37.70%), Postives = 78/122 (63.93%), Query Frame = -1
Query:    1 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQG-KYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAVS 363
            L+S Y + G   EA+D+   M+  G + ++VTYNA++   GK G  + E   +FDEM  + V P+ +T++++I V S+GGL++EA  +F+E  + G+  D+  Y+ L+DA+CK G ++ A S
Sbjct:  238 LISAYGRSGFCWEAMDVFEMMKSCGCKPNLVTYNAVIDACGKGGVDFKEALQVFDEMIREGVQPDRITFNSLIAVCSRGGLWEEAQGMFKEMLYRGIDQDIFTYNTLLDAVCKGGQMDLAAS 359          

HSP 3 Score: 85.5001 bits (210), Expect = 1.539e-16
Identity = 44/121 (36.36%), Postives = 74/121 (61.16%), Query Frame = -1
Query:    1 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAVS 363
            L+++ ++ G +EEA  + +EM   G+ +D+ TYN LL    K G+ D   ++   M   K+ PN++TYST++D Y+K G  DEA++++ E K+AG+  D V Y+ L+    K G  E A++
Sbjct:  309 LIAVCSRGGLWEEAQGMFKEMLYRGIDQDIFTYNTLLDAVCKGGQMDLAASIMSGMSHNKILPNVVTYSTVMDGYAKAGRLDEALELYHEMKYAGISLDRVSYNTLVSIYAKLGRFEEALA 429          

HSP 4 Score: 73.9442 bits (180), Expect = 1.327e-12
Identity = 40/114 (35.09%), Postives = 66/114 (57.89%), Query Frame = -1
Query:   22 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNG 363
            LL    K G+ + A  I   M  + +  +VVTY+ ++ GY K G+ DE   L+ EMK   +S + ++Y+T++ +Y+K G ++EA+ V  E + AG+  D V Y+AL+    K G
Sbjct:  344 LLDAVCKGGQMDLAASIMSGMSHNKILPNVVTYSTVMDGYAKAGRLDEALELYHEMKYAGISLDRVSYNTLVSIYAKLGRFEEALAVCEEMERAGINKDAVTYNALLGGYGKQG 457          

HSP 5 Score: 72.4034 bits (176), Expect = 4.456e-12
Identity = 41/120 (34.17%), Postives = 67/120 (55.83%), Query Frame = -1
Query:    7 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGL-YDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 363
            ++SI  +LGR E A  +  + +  G    V  ++AL+  YG+ G   E   +F+ MK+    PNL+TY+ +ID   KGG+ + EA+ VF E    G++ D + +++LI    + GL E A
Sbjct:  203 MISILGRLGRVEVARRVFDKAKAEGYGNTVYAFSALISAYGRSGFCWEAMDVFEMMKSCGCKPNLVTYNAVIDACGKGGVDFKEALQVFDEMIREGVQPDRITFNSLIAVCSRGGLWEEA 322          

HSP 6 Score: 68.9366 bits (167), Expect = 6.013e-11
Identity = 37/133 (27.82%), Postives = 71/133 (53.38%), Query Frame = -1
Query:   28 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYD---------------------EAMDVFREFKWAGLKADVVLYSALIDALCK 363
            L+  ++K G  +EA+ I +E + SG++ DVV Y+AL+    K G  +E  +L D+M  + V PN++TY+++ID + + G +                        +++F +    G+K +VV +SA+++A  +
Sbjct:  484 LIDTFSKGGLQDEAMQILKEFKHSGLKPDVVLYSALIDALCKNGLVEEALSLLDQMTNKGVKPNVVTYNSIIDAFGRSGQFGIERTLSMSFSEDTRQTSKEILYTVEMFHKMHELGIKPNVVTFSAILNACSR 616          

HSP 7 Score: 65.0846 bits (157), Expect = 1.206e-9
Identity = 33/110 (30.00%), Postives = 61/110 (55.45%), Query Frame = -1
Query:    4 FEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 333
            F+EAL +  EM   G++ D +T+N+L+    + G ++E + +F EM  + +  ++ TY+T++D   KGG  D A  +        +  +VV YS ++D   K G ++ A+
Sbjct:  284 FKEALQVFDEMIREGVQPDRITFNSLIAVCSRGGLWEEAQGMFKEMLYRGIDQDIFTYNTLLDAVCKGGQMDLAASIMSGMSHNKILPNVVTYSTVMDGYAKAGRLDEAL 393          
BLAST of g.arboreum_cottongen_reftransV1_0010846 vs. ExPASy Swiss-Prot
Match: PP123_ARATH (Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.097e-17
Identity = 40/119 (33.61%), Postives = 71/119 (59.66%), Query Frame = -1
Query:    7 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 363
            L+ I+AK G  + A+D+ + M+++G+  D  TY+ ++   GK G       LF EM  Q  +PNL+T++ MI +++K   Y+ A+ ++R+ + AG + D V YS +++ L   G +E A
Sbjct:  435 LIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEA 553          

HSP 2 Score: 78.9518 bits (193), Expect = 3.243e-16
Identity = 41/120 (34.17%), Postives = 66/120 (55.00%), Query Frame = -1
Query:    7 SIYAKLGR---FEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 357
            ++   LGR   F E   +  EM   G + + VTYN L+  YG+     E   +F++M+     P+ +TY T+ID+++K G  D AMD+++  + AGL  D   YS +I+ L K G + +A
Sbjct:  364 TMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAA 483          

HSP 3 Score: 68.5514 bits (166), Expect = 9.009e-13
Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = -1
Query:    4 GMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 291
            G + D  TY  ++G  G+  ++ E+  L DEM      PN +TY+ +I  Y +     EAM+VF + + AG + D V Y  LID   K G ++ A+
Sbjct:  354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAM 449          

HSP 4 Score: 61.2326 bits (147), Expect = 2.789e-10
Identity = 30/112 (26.79%), Postives = 63/112 (56.25%), Query Frame = -1
Query:   28 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCK 363
            +++++AK   +E AL + R+M+++G + D VTY+ ++   G  G  +E   +F EM+ +   P+   Y  ++D++ K G  D+A   ++    AGL+ +V   ++L+    +
Sbjct:  505 MIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLR 616          
BLAST of g.arboreum_cottongen_reftransV1_0010846 vs. ExPASy Swiss-Prot
Match: PP344_ARATH (Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-17
Identity = 45/115 (39.13%), Postives = 64/115 (55.65%), Query Frame = -1
Query:    4 AKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 348
            +K GR  EA  +   M D G R +   YN L+ G+GK G+ D   ALF  M  + V P+L TYS ++D     G  DE +  F+E K +GL  DVV Y+ +I+ L K+  +E A+
Sbjct:  902 SKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEAL 1016          

HSP 2 Score: 79.337 bits (194), Expect = 2.629e-16
Identity = 41/120 (34.17%), Postives = 71/120 (59.17%), Query Frame = -1
Query:    7 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQK-VSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 363
            L+     +GR +E L   +E+++SG+  DVV YN ++ G GK  + +E   LF+EMK  + ++P+L TY+++I      G+ +EA  ++ E + AGL+ +V  ++ALI     +G  E A
Sbjct:  967 LVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHA 1086          

HSP 3 Score: 75.485 bits (184), Expect = 4.375e-15
Identity = 37/120 (30.83%), Postives = 65/120 (54.17%), Query Frame = -1
Query:    4 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 363
            ++  Y+K+G  +EA+ +  EM ++G   DV+  N+L+    K  + DE   +F  MK  K+ P ++TY+T++    K G   EA+++F      G   + + ++ L D LCKN  V  A+
Sbjct:  509 MMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLAL 628          

HSP 4 Score: 71.2478 bits (173), Expect = 1.339e-13
Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = -1
Query:   22 LSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNG 360
            + +  + G+  EA +I + M+D G   DVVTY  L+       K D  + +F++MK  +  P+ +TY T++D +S     D     + E +  G   DVV ++ L+DALCK G
Sbjct:  265 IRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAG 377          

HSP 5 Score: 70.4774 bits (171), Expect = 2.420e-13
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = -1
Query:    4 AKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 348
            AK GR  EA  I   ++D G+  D VTYN ++  Y K G+ DE   L  EM      P+++  +++I+   K    DEA  +F   K   LK  VV Y+ L+  L KNG ++ A+
Sbjct:  479 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAI 593          

HSP 6 Score: 69.707 bits (169), Expect = 4.055e-13
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = -1
Query:   31 RF-EEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALC 336
            RF  EA+++ R M   G R  + TY++L+ G GK+   D V  L  EM+   + PN+ T++  I V  + G  +EA ++ +     G   DVV Y+ LIDALC
Sbjct:  202 RFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALC 304          

HSP 7 Score: 68.9366 bits (167), Expect = 9.422e-13
Identity = 40/120 (33.33%), Postives = 61/120 (50.83%), Query Frame = -1
Query:    4 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 363
            L++   K  R +EA  +   M++  ++  VVTYN LL G GK GK  E   LF+ M  +   PN +T++T+ D   K      A+ +  +    G   DV  Y+ +I  L KNG V+ A+
Sbjct:  544 LINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAM 663          

HSP 8 Score: 62.7734 bits (151), Expect = 9.534e-11
Identity = 37/114 (32.46%), Postives = 56/114 (49.12%), Query Frame = -1
Query:   22 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNG 363
            L+    K G F EA D    M D G+  ++ TYN L+ G  +  + D+   LF  M++  V P   TY   ID Y K G    A++ F + K  G+  ++V  +A + +L K G
Sbjct:  369 LVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAG 482          

HSP 9 Score: 62.3882 bits (150), Expect = 1.393e-10
Identity = 36/105 (34.29%), Postives = 54/105 (51.43%), Query Frame = -1
Query:   22 FEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKW-AGLKADVVLYSALIDALCKNG 333
             E A D+  +++ +G   DV TYN LL  YGK GK DE+  L+ EM   +   N +T++ +I    K G  D+A+D++ +             Y  LID L K+G
Sbjct:  801 IEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSG 905          

HSP 10 Score: 61.6178 bits (148), Expect = 2.149e-10
Identity = 37/121 (30.58%), Postives = 59/121 (48.76%), Query Frame = -1
Query:    4 LLSIYAKLGRFEEALDICRE-MEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 363
            ++S   K G  ++ALD+  + M D        TY  L+ G  K G+  E + LF+ M      PN   Y+ +I+ + K G  D A  +F+     G++ D+  YS L+D LC  G V+  +
Sbjct:  861 VISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGL 981          

HSP 11 Score: 59.6918 bits (143), Expect = 1.157e-9
Identity = 37/115 (32.17%), Postives = 61/115 (53.04%), Query Frame = -1
Query:    7 YAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 351
            Y K G    AL+   +M+  G+  ++V  NA L    K G+  E + +F  +K   + P+ +TY+ M+  YSK G  DEA+ +  E    G + DV++ ++LI+ L K   V+ A
Sbjct:  443 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEA 557          

HSP 12 Score: 58.5362 bits (140), Expect = 2.811e-9
Identity = 36/122 (29.51%), Postives = 59/122 (48.36%), Query Frame = -1
Query:    1 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRAL-FDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAVS 363
            LL  Y K G+ +E  ++ +EM       + +T+N ++ G  K G  D+   L +D M  +  SP   TY  +ID  SK G   EA  +F      G + +  +Y+ LI+   K G  ++A +
Sbjct:  826 LLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACA 947          

HSP 13 Score: 56.6102 bits (135), Expect = 1.083e-8
Identity = 36/120 (30.00%), Postives = 65/120 (54.17%), Query Frame = -1
Query:    7 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWA-GLKADVVLYSALIDALCKNGLVESA 363
            L++ + K G  + A  + + M   G+R D+ TY+ L+      G+ DE    F E+K   ++P+++ Y+ +I+   K    +EA+ +F E K + G+  D+  Y++LI  L   G+VE A
Sbjct:  932 LINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEA 1051          

HSP 14 Score: 54.6842 bits (130), Expect = 4.491e-8
Identity = 35/116 (30.17%), Postives = 61/116 (52.59%), Query Frame = -1
Query:    4 KLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRAL--FDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 345
            ++ R ++AL++   ME  G++    TY   +  YGK G  D V AL  F++MK + ++PN++  +  +   +K G   EA  +F   K  GL  D V Y+ ++    K G ++ A+
Sbjct:  410 RVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSG--DSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAI 523          

HSP 15 Score: 53.5286 bits (127), Expect = 1.029e-7
Identity = 34/101 (33.66%), Postives = 50/101 (49.50%), Query Frame = -1
Query:    4 EMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 306
            EME  G   DVVT+  L+    K G + E     D M+ Q + PNL TY+T+I    +    D+A+++F   +  G+K     Y   ID   K+G   SA+
Sbjct:  353 EMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSAL 453          

HSP 16 Score: 53.5286 bits (127), Expect = 1.243e-7
Identity = 27/99 (27.27%), Postives = 56/99 (56.57%), Query Frame = -1
Query:    4 EDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 300
            +D G++  + TYN L+GG  +    +  + +F ++K+    P++ TY+ ++D Y K G  DE  ++++E      +A+ + ++ +I  L K G V+ A+
Sbjct:  777 KDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDAL 875          

HSP 17 Score: 53.1434 bits (126), Expect = 1.435e-7
Identity = 31/114 (27.19%), Postives = 54/114 (47.37%), Query Frame = -1
Query:   25 SIYAKLGR---FEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKN 357
            S+   LG+    +  + + +EME  G++ +V T+   +   G+ GK +E   +   M  +   P+++TY+ +ID        D A +VF + K    K D V Y  L+D    N
Sbjct:  228 SLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDN 341          

HSP 18 Score: 53.1434 bits (126), Expect = 1.570e-7
Identity = 31/102 (30.39%), Postives = 52/102 (50.98%), Query Frame = -1
Query:   46 AKLGRFEEALDICREMEDS-GMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSAL 348
             K  R EEAL +  EM+ S G+  D+ TYN+L+   G  G  +E   +++E++   + PN+ T++ +I  YS  G  + A  V++     G   +   Y  L
Sbjct: 1007 GKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108          
BLAST of g.arboreum_cottongen_reftransV1_0010846 vs. ExPASy Swiss-Prot
Match: PPR91_ARATH (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.383e-17
Identity = 40/117 (34.19%), Postives = 68/117 (58.12%), Query Frame = -1
Query:   13 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVE 363
            L+  + K  R EE +++ REM   G+  + VTYN L+ G  + G  D  + +F EM +  V PN++TY+T++D   K G  ++AM VF   + + ++  +  Y+ +I+ +CK G VE
Sbjct:  402 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518          

HSP 2 Score: 74.7146 bits (182), Expect = 6.465e-15
Identity = 37/111 (33.33%), Postives = 61/111 (54.95%), Query Frame = -1
Query:    7 GRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 339
            G  + A +I +EM   G+  +++TYN LL G  K GK ++   +F+ ++  K+ P + TY+ MI+   K G  ++  D+F      G+K DVV Y+ +I   C+ G  E A
Sbjct:  445 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555          

HSP 3 Score: 70.8626 bits (172), Expect = 1.314e-13
Identity = 34/114 (29.82%), Postives = 65/114 (57.02%), Query Frame = -1
Query:    7 AKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 348
             K    ++AL++ +EME  G+R +VVTY++L+      G++ +   L  +M  +K++P++ T+S +ID + K G   EA  ++ E     +   +V YS+LI+  C +  ++ A
Sbjct:  267 CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 380          

HSP 4 Score: 70.8626 bits (172), Expect = 1.418e-13
Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = -1
Query:   22 EALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNG 327
            EA+ +   M   G + D+VTY  ++ G  K+G  D    L ++M+  K+ P +L Y+T+ID   K    D+A+++F+E +  G++ +VV YS+LI  LC  G
Sbjct:  204 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYG 305          

HSP 5 Score: 69.3218 bits (168), Expect = 3.878e-13
Identity = 36/114 (31.58%), Postives = 63/114 (55.26%), Query Frame = -1
Query:   22 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNG 363
            L+  + K G+  EA  +  EM    +   +VTY++L+ G+    + DE + +F+ M ++   P+++TY+T+I  + K    +E M+VFRE    GL  + V Y+ LI  L + G
Sbjct:  332 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 445          

HSP 6 Score: 68.9366 bits (167), Expect = 6.287e-13
Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = -1
Query:    4 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 363
            L+S     GR+ +A  +  +M +  +  DV T++AL+  + K+GK  E   L+DEM  + + P+++TYS++I+ +      DEA  +F          DVV Y+ LI   CK   VE  +
Sbjct:  297 LISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 416          

HSP 7 Score: 68.9366 bits (167), Expect = 6.782e-13
Identity = 38/120 (31.67%), Postives = 65/120 (54.17%), Query Frame = -1
Query:    4 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 363
            L++ +    R +EA  +   M       DVVTYN L+ G+ K  + +E   +F EM  + +  N +TY+ +I    + G  D A ++F+E    G+  +++ Y+ L+D LCKNG +E A+
Sbjct:  367 LINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAM 486          

HSP 8 Score: 67.0106 bits (162), Expect = 2.935e-12
Identity = 36/112 (32.14%), Postives = 60/112 (53.57%), Query Frame = -1
Query:   28 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCK 363
            LL+ Y    R  EA+ +  +M  +G + + VT+N L+ G     K  E  AL D M A+   P+L+TY  +++   K G  D A ++  + +   L+  V++Y+ +ID LCK
Sbjct:  157 LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 268          

HSP 9 Score: 62.7734 bits (151), Expect = 8.546e-11
Identity = 36/114 (31.58%), Postives = 59/114 (51.75%), Query Frame = -1
Query:   10 AKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNG-LVES 348
             K G  + A ++  +ME   +   V+ YN ++ G  K    D+   LF EM+ + + PN++TYS++I      G + +A  +  +     +  DV  +SALIDA  K G LVE+
Sbjct:  232 CKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 345          

HSP 10 Score: 58.5362 bits (140), Expect = 2.148e-9
Identity = 36/119 (30.25%), Postives = 64/119 (53.78%), Query Frame = -1
Query:    7 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 363
            LL    K G+ E+A+ +   ++ S M   + TYN ++ G  K GK ++   LF  +  + V P+++ Y+TMI  + + G  +EA  +F+E K  G   +   Y+ LI A  ++G  E++
Sbjct:  472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREAS 590          

HSP 11 Score: 58.151 bits (139), Expect = 2.913e-9
Identity = 32/114 (28.07%), Postives = 55/114 (48.25%), Query Frame = -1
Query:   22 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNG 363
            L++ + +  +   AL +  +M   G   ++VT ++LL GY    +  E  AL D+M      PN +T++T+I          EAM +       G + D+V Y  +++ LCK G
Sbjct:  122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235          

HSP 12 Score: 56.6102 bits (135), Expect = 9.814e-9
Identity = 28/94 (29.79%), Postives = 49/94 (52.13%), Query Frame = -1
Query:   67 AKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKAD 348
             K G+ E+  D+   +   G++ DVV YN ++ G+ ++G  +E  ALF EMK     PN   Y+T+I    + G  + + ++ +E +  G   D
Sbjct:  512 CKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGD 605          
BLAST of g.arboreum_cottongen_reftransV1_0010846 vs. ExPASy Swiss-Prot
Match: PP306_ARATH (Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.403e-17
Identity = 38/108 (35.19%), Postives = 66/108 (61.11%), Query Frame = -1
Query:   22 KLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNG 345
            K GR ++A  +  EM + G+  ++VTYN L+GG  ++ K +E   + D+MK+  ++PNL+TY+T+ID +   G   +A+ + R+ K  GL   +V Y+ L+   C+ G
Sbjct:  280 KDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKG 387          

HSP 2 Score: 69.3218 bits (168), Expect = 4.359e-13
Identity = 33/119 (27.73%), Postives = 65/119 (54.62%), Query Frame = -1
Query:    7 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 363
            L+  +  +G+  +AL +CR+++  G+   +VTYN L+ G+ ++G       +  EM+ + + P+ +TY+ +ID +++    ++A+ +    +  GL  DV  YS LI   C  G +  A
Sbjct:  344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEA 462          

HSP 3 Score: 65.4698 bits (158), Expect = 9.144e-12
Identity = 36/112 (32.14%), Postives = 60/112 (53.57%), Query Frame = -1
Query:   28 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCK 363
            L+  +A+    E+A+ +   ME+ G+  DV TY+ L+ G+  +G+ +E   LF  M  +   PN + Y+TMI  Y K G    A+ + +E +   L  +V  Y  +I+ LCK
Sbjct:  414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCK 525          

HSP 4 Score: 61.6178 bits (148), Expect = 1.593e-10
Identity = 30/111 (27.03%), Postives = 63/111 (56.76%), Query Frame = -1
Query:    4 RFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 336
            +  EA  +  +M+  G+  +++TYN L+ G+   GK  +  +L  ++K++ +SP+L+TY+ ++  + + G    A  + +E +  G+K   V Y+ LID   ++  +E A+
Sbjct:  318 KLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAI 428          

HSP 5 Score: 61.6178 bits (148), Expect = 1.851e-10
Identity = 33/115 (28.70%), Postives = 64/115 (55.65%), Query Frame = -1
Query:    1 KLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAVS 345
            K G  ++  ++  +M++ G+  ++ TYN ++    K G+  +   +FDEM+ + VS N++TY+T+I    +    +EA  V  + K  G+  +++ Y+ LID  C  G +  A+S
Sbjct:  245 KNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALS 359          

HSP 6 Score: 61.6178 bits (148), Expect = 1.868e-10
Identity = 34/106 (32.08%), Postives = 56/106 (52.83%), Query Frame = -1
Query:   28 KLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCK 345
            K G  E+A D+  EM   G+  +  TY  L+ G  K G   +   ++++M+   V PNL TY+ +++   K G   +A  VF E +  G+  ++V Y+ LI  LC+
Sbjct:  210 KKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCR 315          

HSP 7 Score: 57.3806 bits (137), Expect = 4.249e-9
Identity = 29/111 (26.13%), Postives = 61/111 (54.95%), Query Frame = -1
Query:    7 GRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 339
            G  E++ D+  E+ + G   +VV Y  L+ G  K+G+ ++ + LF EM    +  N  TY+ +I+   K G+  +  +++ + +  G+  ++  Y+ +++ LCK+G  + A
Sbjct:  177 GEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDA 287          

HSP 8 Score: 50.8322 bits (120), Expect = 6.366e-7
Identity = 30/87 (34.48%), Postives = 49/87 (56.32%), Query Frame = -1
Query:   19 DVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGL 279
            DV ++  L+ G  + G+ ++   L  E+     SPN++ Y+T+ID   K G  ++A D+F E    GL A+   Y+ LI+ L KNG+
Sbjct:  162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGV 248          
BLAST of g.arboreum_cottongen_reftransV1_0010846 vs. ExPASy Swiss-Prot
Match: PPR49_ARATH (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.454e-17
Identity = 41/119 (34.45%), Postives = 69/119 (57.98%), Query Frame = -1
Query:    7 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 363
            L+ I+AK G  + A+D+ + M+  G+  D  TY+ ++   GK G       LF EM  Q  +PNL+TY+ M+D+++K   Y  A+ ++R+ + AG + D V YS +++ L   G +E A
Sbjct:  440 LIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEA 558          

HSP 2 Score: 75.8702 bits (185), Expect = 2.843e-15
Identity = 38/113 (33.63%), Postives = 63/113 (55.75%), Query Frame = -1
Query:    7 KLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 345
            + G   + LD   EM   G + + VTYN L+  YG+    +E   +F++M+     P+ +TY T+ID+++K G  D AMD+++  +  GL  D   YS +I+ L K G + +A
Sbjct:  379 QFGAINKLLD---EMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAA 488          

HSP 3 Score: 68.5514 bits (166), Expect = 8.951e-13
Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = -1
Query:    4 GMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESAV 291
            G + D  TY  ++G  G+  ++  +  L DEM      PN +TY+ +I  Y +    +EAM+VF + + AG K D V Y  LID   K G ++ A+
Sbjct:  359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAM 454          

HSP 4 Score: 60.077 bits (144), Expect = 7.437e-10
Identity = 31/119 (26.05%), Postives = 66/119 (55.46%), Query Frame = -1
Query:   10 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCK-NGLVES 363
            ++ ++AK   ++ AL + R+M+++G   D VTY+ ++   G  G  +E  A+F EM+ +   P+   Y  ++D++ K G  ++A   ++    AGL+ +V   ++L+    + N + E+
Sbjct:  510 MMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEA 628          

HSP 5 Score: 59.3066 bits (142), Expect = 1.403e-9
Identity = 31/108 (28.70%), Postives = 56/108 (51.85%), Query Frame = -1
Query:   40 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALID 363
            L+  Y +     EA+++  +M+++G + D VTY  L+  + K G  D    ++  M+A  +SP+  TYS +I+   K G    A  +F E    G   ++V Y+ ++D
Sbjct:  405 LIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMD 512          

HSP 6 Score: 56.9954 bits (136), Expect = 6.425e-9
Identity = 35/119 (29.41%), Postives = 56/119 (47.06%), Query Frame = -1
Query:    7 LLSIYAKLGRFEEALDICREMEDSGMRRDVVTYNALLGGYGKQGKYDEVRALFDEMKAQKVSPNLLTYSTMIDVYSKGGLYDEAMDVFREFKWAGLKADVVLYSALIDALCKNGLVESA 363
            +++   K G    A  +  EM D G   ++VTYN ++  + K   Y     L+ +M+     P+ +TYS +++V    G  +EA  VF E +      D  +Y  L+D   K G VE A
Sbjct:  475 IINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 593          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010846 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7LDK6_ARALL6.535e-5679.34Pentatricopeptide repeat-containing protein OS=Ara... [more]
R0HMT7_9BRAS1.388e-5578.51Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
A0A087GMW4_ARAAL8.614e-5577.69Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]
M5X9I1_PRUPE1.420e-5474.17Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A0D6QYD1_ARACU2.884e-5473.55Uncharacterized protein OS=Araucaria cunninghamii ... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010846 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PP123_ARATH1.097e-1733.61Pentatricopeptide repeat-containing protein At1g74... [more]
PP344_ARATH1.319e-1739.13Pentatricopeptide repeat-containing protein At4g31... [more]
PPR91_ARATH1.383e-1734.19Pentatricopeptide repeat-containing protein At1g62... [more]
PP306_ARATH1.403e-1735.19Pentatricopeptide repeat-containing protein At4g11... [more]
PPR49_ARATH1.454e-1734.45Pentatricopeptide repeat-containing protein At1g18... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 29..76
e-value: 1.3E-17
score: 63.6
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 95..120
e-value: 1.6E-8
score: 34.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 67..95
e-value: 4.1E-7
score: 27.8
coord: 1..29
e-value: 2.1E-6
score: 25.5
coord: 31..64
e-value: 9.6E-12
score: 42.3
coord: 101..120
e-value: 9.2E-4
score: 17.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 1..25
e-value: 2.1E-5
score: 24.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 99..121
score: 8.528
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..28
score: 9.591
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 29..63
score: 13.669
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 64..98
score: 11.29
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 3..90
e-value: 3.0E-7
score: 29.6
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 4..90
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..119

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010846 ID=g.arboreum_cottongen_reftransV1_0010846; Name=g.arboreum_cottongen_reftransV1_0010846; organism=Gossypium arboreum; type=contig; length=363bp
GGATACAGCAGATTCCACCAACCCATTCTTGCATAAAGCATCAATTAATG
CACTGTATAGTACAACATCAGCCTTCAATCCTGCCCACTTAAACTCCCTA
AAAACATCCATAGCCTCGTCATACAAACCACCCTTCGAATACACATCAAT
CATTGTGGAGTAAGTTAATAAATTAGGTGACACCTTTTGAGCTTTCATTT
CATCAAACAGTGCTCTAACTTCATCATACTTTCCTTGTTTCCCGTATCCA
CCCAAAAGTGCATTGTAAGTAACAACATCCCTCCTCATCCCTGAATCCTC
CATCTCCCTGCAAATATCTAGAGCCTCCTCAAACCTACCAAGCTTTGCAT
AAATAGAAAGCAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_rpt
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding