g.arboreum_cottongen_reftransV1_0019901, g.arboreum_cottongen_reftransV1_0019901 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A061GKZ0_THECC (HMG-box DNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_029514 PE=4 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.252e-37 Identity = 79/100 (79.00%), Postives = 88/100 (88.00%), Query Frame = -2 Query: 322 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXX-XXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYE 618 T SN +M LRVKSSEKMK++A++SVVSEREKR SKSR + K+ T+IDAKMPKKPPTAFFYFLEDFRKEFQEQNP IKSMRDIG+ACGEKWKTMTYE Sbjct: 26 TPSNQKMVLRVKSSEKMKRSAQQSVVSEREKRRTSKSRPKSKQKKKNTRIDAKMPKKPPTAFFYFLEDFRKEFQEQNPDIKSMRDIGRACGEKWKTMTYE 125
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: K7KPX3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 1.443e-37 Identity = 74/121 (61.16%), Postives = 89/121 (73.55%), Query Frame = -2 Query: 244 HQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 606 ++ LR+KS+E K++ ++ K + K K K DA P+KPPTAFFYFLEDFRKEFQEQNP +KSMRDIGKACGEKWKTMTYEEKV+YYDIAT+KR EFD AMAE+ K+ Sbjct: 21 DKLVLRIKSNEGTKRSVRQT--------NSRKKLKAKQKKNKQKFDAMKPRKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATKKREEFDSAMAEFNKK 133
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0B2R0V3_GLYSO (High mobility group B protein 14 OS=Glycine soja GN=glysoja_018743 PE=4 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 1.443e-37 Identity = 74/121 (61.16%), Postives = 89/121 (73.55%), Query Frame = -2 Query: 244 HQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 606 ++ LR+KS+E K++ ++ K + K K K DA P+KPPTAFFYFLEDFRKEFQEQNP +KSMRDIGKACGEKWKTMTYEEKV+YYDIAT+KR EFD AMAE+ K+ Sbjct: 21 DKLVLRIKSNEGTKRSVRQT--------NSRKKLKAKQKKNKQKFDAMKPRKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATKKREEFDSAMAEFNKK 133
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: V4MHM5_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017360mg PE=4 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.955e-37 Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = -2 Query: 244 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRD-IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 477 K+ +KMPKKPPTAFFYFLEDFRK++QEQNP IKSMR+ IGK CGEKWKTMTYEEKVKYYDIATEKR EF RAM EY KR Sbjct: 62 KLHSKMPKKPPTAFFYFLEDFRKQYQEQNPEIKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKREEFQRAMTEYTKR 140
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: C6SVV0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 3.059e-37 Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = -2 Query: 244 HQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 606 ++ LR+KS+E K++ ++ K + K K K DA P+KPPTAFFYFLEDFRKEFQEQNP ++SMRDIGKACGEKWKTMTYEEKV+YYDIAT+KR EFD AMAE+ K+ Sbjct: 21 DKLVLRIKSNEGTKRSVRQT--------NSRKKLKAKQKKNKQKFDAMKPRKPPTAFFYFLEDFRKEFQEQNPDVRSMRDIGKACGEKWKTMTYEEKVQYYDIATKKREEFDSAMAEFNKK 133
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMG14_ARATH (High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14 PE=2 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 2.770e-37 Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = -2 Query: 244 IDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 474 + KMPKKP TAFF+FL+DFRK++QE+NP +KSMR+IGK CGEKWKTMTYEEKVKYYDIATEKR EF RAM EY KR Sbjct: 58 LQTKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYTKR 134
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB4_ARATH (High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 3.311e-17 Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -2 Query: 253 TKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEY 480 TK D PK+PP+AFF FLEDFRKEF NP KS+ +GKA G +WK MT E+K Y A ++ E+ + + +Y Sbjct: 28 TKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQY 103
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB5_ARATH (High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.488e-16 Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = -2 Query: 253 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEY 471 D PKKPP+ FF FL+DFRKEF NP KS+ ++G+A G+KWKTMT EE+ + + K+ E+ M +Y Sbjct: 30 DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQY 102
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB1_ARATH (High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.821e-16 Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = -2 Query: 247 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIK 477 K D PK+ P+AFF FLEDFR F+++NP +K++ +GKA G+KWK+M+ EK Y + A +++AE+++ M Y K Sbjct: 47 KKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNK 123
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.850e-16 Identity = 33/76 (43.42%), Postives = 54/76 (71.05%), Query Frame = -2 Query: 244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471 D PK+PP+AFF F+ DFR+++++ +P KS+ +GKACGE+WK+++ EEK Y D A +K+ E++ + Y K+ Sbjct: 41 DPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.015e-15 Identity = 33/75 (44.00%), Postives = 53/75 (70.67%), Query Frame = -2 Query: 247 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIK 471 D PK+ P+AFF F+E+FRKEF+E+NP KS+ +GKA G++WK+++ +K Y A + + E+++A+A Y K Sbjct: 37 DPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.635e-15 Identity = 32/75 (42.67%), Postives = 52/75 (69.33%), Query Frame = -2 Query: 247 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIK 471 D PK+ P+AFF F+ +FR+EF+++NP KS+ +GKA GE+WK+++ EK Y A + + E+++A+A Y K Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.401e-15 Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = -2 Query: 244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471 D PK+PP+AFF F+EDFRK ++E++P KS+ +GKA G+KWK +T EK + A +++ E+++ + Y K+ Sbjct: 32 DPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKK 107
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB2_ARATH (High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.102e-14 Identity = 31/76 (40.79%), Postives = 52/76 (68.42%), Query Frame = -2 Query: 244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471 D PK+P +AFF F+EDFR+ F+++NP KS+ +GKA G+KWK+++ EK Y A +++ E+++ + Y K+ Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKK 109
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.553e-14 Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = -2 Query: 244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471 D PK+PP+AFF F+E+FRK F +++P K++ +GKA G KWKTM+ EK Y + +++ E+++ M Y K+ Sbjct: 40 DPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKK 115 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 21
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019901 ID=g.arboreum_cottongen_reftransV1_0019901; Name=g.arboreum_cottongen_reftransV1_0019901; organism=Gossypium arboreum; type=contig; length=862bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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