g.arboreum_cottongen_reftransV1_0019901, g.arboreum_cottongen_reftransV1_0019901 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019901
Unique Nameg.arboreum_cottongen_reftransV1_0019901
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length862
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0019901:1..862 .
Chr9:84760797..84762925 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: M5X7V5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013152mg PE=4 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.025e-42
Identity = 80/120 (66.67%), Postives = 96/120 (80.00%), Query Frame = -2 
Query:  241 MALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 600
            M L+VK SE  +++A  S  SE ++    +     + K+  K+DAK+PKKPPTAFFYFLEDFRKEFQEQNPG+KSMRDIG+ACGEKWKTM YEEKV+YYDIA EKRAEFD+AMAEY +RK
Sbjct:    1 MVLKVKQSEGTRRSARLSS-SEGKRAISVQKSKTKQKKKSAKLDAKIPKKPPTAFFYFLEDFRKEFQEQNPGVKSMRDIGRACGEKWKTMAYEEKVQYYDIAMEKRAEFDKAMAEYTERK 119
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0A0KKL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G522770 PE=4 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.332e-42
Identity = 77/118 (65.25%), Postives = 89/118 (75.42%), Query Frame = -2 
Query:  244 ALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 597
             LRVK SE MK  A+ S  +  ++    K     + K+  K D   PKKPPTAFFYFL+DFRKEFQEQNP +K+MRD+GKACGEKWKTMTYEEKV+YYDIATEKRAEFD+AM EY KR
Sbjct:   27 GLRVKRSENMKSAAKASRFNTDKRAKTIKKPNSKQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMTEYKKR 144
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A068UDS0_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_21 OS=Coffea canephora GN=GSCOC_T00023162001 PE=4 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.988e-42
Identity = 82/123 (66.67%), Postives = 96/123 (78.05%), Query Frame = -2 
Query:  241 NHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 609
            + +M LRV++S++MK  A        +K+ KS           +KIDA  PKKPPTAFFYFLEDFRKEFQE+NP IK+MRDIGKACGE+WKTMTYEEKV+YYDIATEKRAEFDRAMAEY+KRK
Sbjct:   27 DGRMVLRVRTSQQMKNPAGNKSKMTPKKKKKS-----------SKIDAFKPKKPPTAFFYFLEDFRKEFQEKNPDIKTMRDIGKACGERWKTMTYEEKVQYYDIATEKRAEFDRAMAEYMKRK 138
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A022R159_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015700mg PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.185e-41
Identity = 67/79 (84.81%), Postives = 74/79 (93.67%), Query Frame = -2 
Query:  241 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 477
            K+DA  PKKPPTAFFYFLEDFRKE+QEQNP +KSMRD+GKACGEKWKTMTYEEKV YYDIATEKRA+FD AMA++IKRK
Sbjct:   51 KMDALKPKKPPTAFFYFLEDFRKEYQEQNPDVKSMRDVGKACGEKWKTMTYEEKVHYYDIATEKRADFDTAMADFIKRK 129
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: B9S139_RICCO (DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0633310 PE=4 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 9.068e-41
Identity = 68/79 (86.08%), Postives = 76/79 (96.20%), Query Frame = -2 
Query:  241 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 477
            K+D+K PKKPPTAFFYFLEDFRK+FQ+QNP +KSMR+IGKACGEKWK MTYEEKVKYYDIATEKRAEFD+AMAEYIK+K
Sbjct:  104 KLDSKKPKKPPTAFFYFLEDFRKDFQKQNPDVKSMREIGKACGEKWKMMTYEEKVKYYDIATEKRAEFDKAMAEYIKKK 182
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: I3SF63_MEDTR (High mobility group (HMG)-box protein OS=Medicago truncatula GN=MTR_4g094622 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.628e-40
Identity = 75/120 (62.50%), Postives = 90/120 (75.00%), Query Frame = -2 
Query:  244 QMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 603
            ++ L +KS+E MK++  ++                 + K K KIDAK PKKPPTAFFYFLEDFRKEF++QNP +KSMRDIGKACGEKWKTMT+EEKV+YYDIATEKRAEFDRA  EY K+
Sbjct:   24 KLVLAIKSNEGMKRSLRQT--------KSRDITKAVQKKNKQKIDAKKPKKPPTAFFYFLEDFRKEFKDQNPDVKSMRDIGKACGEKWKTMTFEEKVQYYDIATEKRAEFDRATTEYNKK 135
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: V7CNJ6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G194900g PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.390e-39
Identity = 76/120 (63.33%), Postives = 90/120 (75.00%), Query Frame = -2 
Query:  244 QMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 603
            ++ LR+KS+E +K++  ++           K       K K K DA  PKKPPTAFFYFLEDFRKEFQE+NP +KSMRDIGKACGEKWKTMTYEEKV+YYD+ATEKRAEFDRA AEY K+
Sbjct:   22 KLVLRIKSNEGIKRSVRQT--------NSRKKPKAKLKKNKQKFDAMKPKKPPTAFFYFLEDFRKEFQEKNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDVATEKRAEFDRATAEYNKK 133
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: R0HVG3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10024236mg PE=4 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.001e-38
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = -2 
Query:  244 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 477
            K+ +KMPKKPPTAFFYFLEDFRK++QEQNP +KSMR+IGK+CGEKWKTM YEEKVKYYDIATEKR EF RAM EY KR
Sbjct:   61 KLRSKMPKKPPTAFFYFLEDFRKQYQEQNPEVKSMREIGKSCGEKWKTMIYEEKVKYYDIATEKREEFHRAMTEYTKR 138
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: I1KRE8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.951e-38
Identity = 74/121 (61.16%), Postives = 89/121 (73.55%), Query Frame = -2 
Query:  244 HQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 606
             ++ LR+KS+E +K++  ++           K     + K K   DA  PKKPPTAFFYFLEDFRKEFQEQNP +KSMRDIGKACGEKWKTMTYEEKV+YYDIAT+KR EFD AMAE+ K+
Sbjct:   19 RKLVLRIKSNEGIKRSVRQT--------NSRKKPKAKQKKNKQMFDAMKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATKKREEFDNAMAEFNKK 131
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0B2R446_GLYSO (High mobility group B protein 14 OS=Glycine soja GN=glysoja_025770 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.951e-38
Identity = 74/121 (61.16%), Postives = 89/121 (73.55%), Query Frame = -2 
Query:  244 HQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 606
             ++ LR+KS+E +K++  ++           K     + K K   DA  PKKPPTAFFYFLEDFRKEFQEQNP +KSMRDIGKACGEKWKTMTYEEKV+YYDIAT+KR EFD AMAE+ K+
Sbjct:   19 RKLVLRIKSNEGIKRSVRQT--------NSRKKPKAKQKKNKQMFDAMKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATKKREEFDNAMAEFNKK 131
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMG14_ARATH (High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.770e-37
Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = -2 
Query:  244 IDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 474
            +  KMPKKP TAFF+FL+DFRK++QE+NP +KSMR+IGK CGEKWKTMTYEEKVKYYDIATEKR EF RAM EY KR
Sbjct:   58 LQTKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYTKR 134
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB4_ARATH (High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.311e-17
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -2 
Query:  253 TKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEY 480
            TK D   PK+PP+AFF FLEDFRKEF   NP  KS+  +GKA G +WK MT E+K  Y   A  ++ E+ + + +Y
Sbjct:   28 TKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQY 103
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB5_ARATH (High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.488e-16
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = -2 
Query:  253 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEY 471
            D   PKKPP+ FF FL+DFRKEF   NP  KS+ ++G+A G+KWKTMT EE+  +   +  K+ E+   M +Y
Sbjct:   30 DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQY 102
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB1_ARATH (High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.821e-16
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = -2 
Query:  247 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIK 477
            K D   PK+ P+AFF FLEDFR  F+++NP +K++  +GKA G+KWK+M+  EK  Y + A +++AE+++ M  Y K
Sbjct:   47 KKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNK 123
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.850e-16
Identity = 33/76 (43.42%), Postives = 54/76 (71.05%), Query Frame = -2 
Query:  244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471
            D   PK+PP+AFF F+ DFR+++++ +P  KS+  +GKACGE+WK+++ EEK  Y D A +K+ E++  +  Y K+
Sbjct:   41 DPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.015e-15
Identity = 33/75 (44.00%), Postives = 53/75 (70.67%), Query Frame = -2 
Query:  247 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIK 471
            D   PK+ P+AFF F+E+FRKEF+E+NP  KS+  +GKA G++WK+++  +K  Y   A + + E+++A+A Y K
Sbjct:   37 DPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.635e-15
Identity = 32/75 (42.67%), Postives = 52/75 (69.33%), Query Frame = -2 
Query:  247 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIK 471
            D   PK+ P+AFF F+ +FR+EF+++NP  KS+  +GKA GE+WK+++  EK  Y   A + + E+++A+A Y K
Sbjct:   38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.401e-15
Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = -2 
Query:  244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471
            D   PK+PP+AFF F+EDFRK ++E++P  KS+  +GKA G+KWK +T  EK  +   A +++ E+++ +  Y K+
Sbjct:   32 DPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKK 107
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB2_ARATH (High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.102e-14
Identity = 31/76 (40.79%), Postives = 52/76 (68.42%), Query Frame = -2 
Query:  244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471
            D   PK+P +AFF F+EDFR+ F+++NP  KS+  +GKA G+KWK+++  EK  Y   A +++ E+++ +  Y K+
Sbjct:   34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKK 109
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.553e-14
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = -2 
Query:  244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471
            D   PK+PP+AFF F+E+FRK F +++P  K++  +GKA G KWKTM+  EK  Y   + +++ E+++ M  Y K+
Sbjct:   40 DPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKK 115
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M5X7V5_PRUPE3.025e-4266.67Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A0A0KKL8_CUCSA4.332e-4265.25Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
A0A068UDS0_COFCA6.988e-4266.67Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A022R159_ERYGU8.185e-4184.81Uncharacterized protein OS=Erythranthe guttata GN=... [more]
B9S139_RICCO9.068e-4186.08DNA-binding protein MNB1B, putative OS=Ricinus com... [more]
I3SF63_MEDTR3.628e-4062.50High mobility group (HMG)-box protein OS=Medicago ... [more]
V7CNJ6_PHAVU2.390e-3963.33Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
R0HVG3_9BRAS2.001e-3882.05Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
I1KRE8_SOYBN3.951e-3861.16Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2R446_GLYSO3.951e-3861.16High mobility group B protein 14 OS=Glycine soja G... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
HMG14_ARATH2.770e-3777.92High mobility group B protein 14 OS=Arabidopsis th... [more]
HMGB4_ARATH3.311e-1748.68High mobility group B protein 4 OS=Arabidopsis tha... [more]
HMGB5_ARATH1.488e-1647.95High mobility group B protein 5 OS=Arabidopsis tha... [more]
HMGB1_ARATH1.821e-1645.45High mobility group B protein 1 OS=Arabidopsis tha... [more]
HMGL_VICFA1.850e-1643.42HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE1.015e-1544.00DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT5.635e-1542.67HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGL_IPONI7.401e-1542.11HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGB2_ARATH2.102e-1440.79High mobility group B protein 2 OS=Arabidopsis tha... [more]
HMGL_SOYBN3.553e-1442.11HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 96..167
e-value: 9.4E-22
score: 88.3
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 97..165
e-value: 2.4E-19
score: 69.4
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 96..169
e-value: 3.8E-20
score: 71.7
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 97..166
score: 17.649
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 81..167
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 80..185
coord: 11..23
NoneNo IPR availablePANTHERPTHR13711:SF200HIGH MOBILITY GROUP B PROTEIN 14coord: 80..185
coord: 11..23
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..22
score: 0.483

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019901 ID=g.arboreum_cottongen_reftransV1_0019901; Name=g.arboreum_cottongen_reftransV1_0019901; organism=Gossypium arboreum; type=contig; length=862bp
GTCAGATTAACGTTCAAGTCTGCGTGACAATAATATATATGTAAGAACTA
TCTCCAAGCAGTGATTTACACAAAAATGATACAGGGGTGAACATATTTGC
CTACATTAATATGCTACTCATATAAGTCATAATTAAACCACTACATCTAT
GCATTTCCTGGTACAACACCACCTAAGGTTTATATATATTTATTCATCAA
ACTCCGAATCATCTTCGGTTTCTTCATCTTCGCCACTTTCCTTTCTTTTA
ATGTATTCCGCCATGGCTCTGTCAAACTCTGCTCGTTTCTCGGTTGCAAT
ATCGTAATATTTAACTTTCTCCTCGTATGTCATTGTCTTCCACTTCTCAC
CACATGCCTTCCCAATATCGCGCATTGACTTGATACCCGGATTCTGCTCT
TGAAATTCCTTACGAAAATCCTCCAAGAAGTAAAAGAAAGCAGTGGGGGG
TTTCTTAGGCATTTTAGCATCGATTTTTGTTTTCCTCTTCAGCTTCGATT
TGGGTCTTGACTTCGACTTGGGTCTCTTTTCTCTCTCGCTAACAACACTC
TCTTCAGCTGTCTTCTTCATTTTCTCACTTGATTTTACCCTTAACGCCAT
TTGATGATTGGAGGCTGTTGATGGGTTCTTAGCGGAAGTAACGGAGGTTG
AAGATGAACGATCATTTTTCGACTTTGAAGCTTTCTTCGCCATTTTTTTT
CTCCTTTCTATTTCTAAGACAGGTAGGAGATGGAGACAAATACCCAGAGC
TTGTGCGTTGCTTAGTGTTGGCTGGCTCTCACCAGTGAAGCAGTTACCAC
CACAACTCGACTGTTTCCGGTGGGAAGGAGCTGGGATTTGGACTTCCACG
GGTGAGGGTCAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom