g.arboreum_cottongen_reftransV1_0019901, g.arboreum_cottongen_reftransV1_0019901 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019901
Unique Nameg.arboreum_cottongen_reftransV1_0019901
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length862
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr9chromosomeg.arboreum_cottongen_reftransV1_0019901:1..862 .
Chr9:84760797..84762925 +		n/a
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0D2UJP7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G042300 PE=4 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.590e-61
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = -2 
Query:  241 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 618
            TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLK+KTKIDAKMPKKPPTAFFYFLEDFRK+FQEQNP IKSMRDIGKACGEKWKTMTYEEKVKYYDIAT KRAEFDRAMAEYIKRK
Sbjct:   26 TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLKKKTKIDAKMPKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYEEKVKYYDIATGKRAEFDRAMAEYIKRK 151
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0D2REF3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G042300 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.832e-61
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = -2 
Query:  241 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 618
            TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLK+KTKIDAKMPKKPPTAFFYFLEDFRK+FQEQNP IKSMRDIGKACGEKWKTMTYEEKVKYYDIAT KRAEFDRAMAEYIKRK
Sbjct:   26 TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLKKKTKIDAKMPKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYEEKVKYYDIATGKRAEFDRAMAEYIKRK 151
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A061GEA9_THECC (HMG-box DNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_029514 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.653e-57
Identity = 105/127 (82.68%), Postives = 115/127 (90.55%), Query Frame = -2 
Query:  241 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXX-XXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 618
            T SN +M LRVKSSEKMK++A++SVVSEREKR  SKSR    + K+ T+IDAKMPKKPPTAFFYFLEDFRKEFQEQNP IKSMRDIG+ACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA+YIKRK
Sbjct:   26 TPSNQKMVLRVKSSEKMKRSAQQSVVSEREKRRTSKSRPKSKQKKKNTRIDAKMPKKPPTAFFYFLEDFRKEFQEQNPDIKSMRDIGRACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 152
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0D2ULQ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G042300 PE=4 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.663e-55
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = -2 
Query:  241 MALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 600
            MALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLK+KTKIDAKMPKKPPTAFFYFLEDFRK+FQEQNP IKSMRDIGKACGEKWKTMTYEEKVKYYDIAT KRAEFDRAMAEYIKRK
Sbjct:    1 MALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLKKKTKIDAKMPKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYEEKVKYYDIATGKRAEFDRAMAEYIKRK 120
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: I3S5Q5_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.825e-46
Identity = 80/125 (64.00%), Postives = 98/125 (78.40%), Query Frame = -2 
Query:  244 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 618
            +AS+ ++ LRVKSSE+MK++A+++          +K     +   K +IDA  PKKPPTAFFYFLEDFRKEFQ QNP +K+MRDIGK+CGEKWKTMTYEEKV+YYDIATEKRAEFDRAM EY K+
Sbjct:   25 SASSRKLVLRVKSSEQMKRSAQQT--------KSTKKPKAKQKTSKQRIDANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIATEKRAEFDRAMTEYNKK 141
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A059CC67_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00306 PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.136e-46
Identity = 84/122 (68.85%), Postives = 97/122 (79.51%), Query Frame = -2 
Query:  241 MALRVKSSEKMKKTA--EESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 600
            M LRVKSSEKMK+ A        E   +     +  ++ K+  K+DAKMPKKPPTAFFYFLEDFRK++QEQNP +KSMRDIGKACGEKWKTMTYEEKV+YYDIATEKR EFD+AMAEY+KRK
Sbjct:   29 MVLRVKSSEKMKRLALMSRESEEEWRPKSGRSVKTAARGKKNVKLDAKMPKKPPTAFFYFLEDFRKDYQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRREFDKAMAEYVKRK 150
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A067GRT5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031573mg PE=4 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.052e-44
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = -2 
Query:  241 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 477
            K+D+KMPKKPPTAFFYFLEDFRK FQEQNP IKSMR IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA+YIKRK
Sbjct:   61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: V4TQU5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017037mg PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.021e-43
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = -2 
Query:  241 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 477
            K+D+KMPKKPPTAFFYFLEDFRK FQEQNP IKSMR IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA+YIKRK
Sbjct:   61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: V4UA74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017037mg PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.225e-43
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = -2 
Query:  241 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 477
            K+D+KMPKKPPTAFFYFLEDFRK FQEQNP IKSMR IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA+YIKRK
Sbjct:   40 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 118
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0D2SZH9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G042300 PE=4 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.738e-42
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = -2 
Query:  322 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYE 618
            TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLK+KTKIDAKMPKKPPTAFFYFLEDFRK+FQEQNP IKSMRDIGKACGEKWKTMTYE
Sbjct:   26 TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLKKKTKIDAKMPKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYE 124
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: NHP6_CANAL (Non-histone chromosomal protein 6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NHP6 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 4.569e-7
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = -2 
Query:  244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471
            D   PK+  +A+ +F  + R   + +NPGI S   +GK  GEKWK +  E+K+ Y + A   +  +++  AEY K+
Sbjct:   15 DPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKEKAEYAKK 89
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2UJP7_GOSRA1.590e-6196.83Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2REF3_GOSRA1.832e-6196.83Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GEA9_THECC5.653e-5782.68HMG-box DNA-binding family protein isoform 1 OS=Th... [more]
A0A0D2ULQ9_GOSRA2.663e-5596.67Uncharacterized protein OS=Gossypium raimondii GN=... [more]
I3S5Q5_LOTJA5.825e-4664.00Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
A0A059CC67_EUCGR8.136e-4668.85Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A067GRT5_CITSI5.052e-4492.41Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4TQU5_9ROSI1.021e-4392.41Uncharacterized protein OS=Citrus clementina GN=CI... [more]
V4UA74_9ROSI1.225e-4392.41Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A0D2SZH9_GOSRA1.738e-4296.97Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NHP6_CANAL4.569e-734.21Non-histone chromosomal protein 6 OS=Candida albic... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 96..167
e-value: 9.4E-22
score: 88.3
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 97..165
e-value: 2.4E-19
score: 69.4
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 96..169
e-value: 3.8E-20
score: 71.7
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 97..166
score: 17.649
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 81..167
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 80..185
coord: 11..23
NoneNo IPR availablePANTHERPTHR13711:SF200HIGH MOBILITY GROUP B PROTEIN 14coord: 80..185
coord: 11..23
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..22
score: 0.483

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019901 ID=g.arboreum_cottongen_reftransV1_0019901; Name=g.arboreum_cottongen_reftransV1_0019901; organism=Gossypium arboreum; type=contig; length=862bp
GTCAGATTAACGTTCAAGTCTGCGTGACAATAATATATATGTAAGAACTA
TCTCCAAGCAGTGATTTACACAAAAATGATACAGGGGTGAACATATTTGC
CTACATTAATATGCTACTCATATAAGTCATAATTAAACCACTACATCTAT
GCATTTCCTGGTACAACACCACCTAAGGTTTATATATATTTATTCATCAA
ACTCCGAATCATCTTCGGTTTCTTCATCTTCGCCACTTTCCTTTCTTTTA
ATGTATTCCGCCATGGCTCTGTCAAACTCTGCTCGTTTCTCGGTTGCAAT
ATCGTAATATTTAACTTTCTCCTCGTATGTCATTGTCTTCCACTTCTCAC
CACATGCCTTCCCAATATCGCGCATTGACTTGATACCCGGATTCTGCTCT
TGAAATTCCTTACGAAAATCCTCCAAGAAGTAAAAGAAAGCAGTGGGGGG
TTTCTTAGGCATTTTAGCATCGATTTTTGTTTTCCTCTTCAGCTTCGATT
TGGGTCTTGACTTCGACTTGGGTCTCTTTTCTCTCTCGCTAACAACACTC
TCTTCAGCTGTCTTCTTCATTTTCTCACTTGATTTTACCCTTAACGCCAT
TTGATGATTGGAGGCTGTTGATGGGTTCTTAGCGGAAGTAACGGAGGTTG
AAGATGAACGATCATTTTTCGACTTTGAAGCTTTCTTCGCCATTTTTTTT
CTCCTTTCTATTTCTAAGACAGGTAGGAGATGGAGACAAATACCCAGAGC
TTGTGCGTTGCTTAGTGTTGGCTGGCTCTCACCAGTGAAGCAGTTACCAC
CACAACTCGACTGTTTCCGGTGGGAAGGAGCTGGGATTTGGACTTCCACG
GGTGAGGGTCAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom