g.arboreum_cottongen_reftransV1_0019901, g.arboreum_cottongen_reftransV1_0019901 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0019901
Unique Name	g.arboreum_cottongen_reftransV1_0019901
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	862

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr9	chromosome	g.arboreum_cottongen_reftransV1_0019901:1..862 . Chr9:84760797..84762925 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0D2UJP7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G042300 PE=4 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.590e-61
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = -2

Query:  241 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 618
            TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLK+KTKIDAKMPKKPPTAFFYFLEDFRK+FQEQNP IKSMRDIGKACGEKWKTMTYEEKVKYYDIAT KRAEFDRAMAEYIKRK
Sbjct:   26 TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLKKKTKIDAKMPKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYEEKVKYYDIATGKRAEFDRAMAEYIKRK 151

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0D2REF3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G042300 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.832e-61
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = -2

Query:  241 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 618
            TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLK+KTKIDAKMPKKPPTAFFYFLEDFRK+FQEQNP IKSMRDIGKACGEKWKTMTYEEKVKYYDIAT KRAEFDRAMAEYIKRK
Sbjct:   26 TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLKKKTKIDAKMPKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYEEKVKYYDIATGKRAEFDRAMAEYIKRK 151

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A061GEA9_THECC (HMG-box DNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_029514 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.653e-57
Identity = 105/127 (82.68%), Postives = 115/127 (90.55%), Query Frame = -2

Query:  241 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXX-XXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 618
            T SN +M LRVKSSEKMK++A++SVVSEREKR  SKSR    + K+ T+IDAKMPKKPPTAFFYFLEDFRKEFQEQNP IKSMRDIG+ACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA+YIKRK
Sbjct:   26 TPSNQKMVLRVKSSEKMKRSAQQSVVSEREKRRTSKSRPKSKQKKKNTRIDAKMPKKPPTAFFYFLEDFRKEFQEQNPDIKSMRDIGRACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 152

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0D2ULQ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G042300 PE=4 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.663e-55
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = -2

Query:  241 MALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 600
            MALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLK+KTKIDAKMPKKPPTAFFYFLEDFRK+FQEQNP IKSMRDIGKACGEKWKTMTYEEKVKYYDIAT KRAEFDRAMAEYIKRK
Sbjct:    1 MALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLKKKTKIDAKMPKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYEEKVKYYDIATGKRAEFDRAMAEYIKRK 120

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: I3S5Q5_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.825e-46
Identity = 80/125 (64.00%), Postives = 98/125 (78.40%), Query Frame = -2

Query:  244 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 618
            +AS+ ++ LRVKSSE+MK++A+++          +K     +   K +IDA  PKKPPTAFFYFLEDFRKEFQ QNP +K+MRDIGK+CGEKWKTMTYEEKV+YYDIATEKRAEFDRAM EY K+
Sbjct:   25 SASSRKLVLRVKSSEQMKRSAQQT--------KSTKKPKAKQKTSKQRIDANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIATEKRAEFDRAMTEYNKK 141

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A059CC67_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00306 PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.136e-46
Identity = 84/122 (68.85%), Postives = 97/122 (79.51%), Query Frame = -2

Query:  241 MALRVKSSEKMKKTA--EESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 600
            M LRVKSSEKMK+ A        E   +     +  ++ K+  K+DAKMPKKPPTAFFYFLEDFRK++QEQNP +KSMRDIGKACGEKWKTMTYEEKV+YYDIATEKR EFD+AMAEY+KRK
Sbjct:   29 MVLRVKSSEKMKRLALMSRESEEEWRPKSGRSVKTAARGKKNVKLDAKMPKKPPTAFFYFLEDFRKDYQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRREFDKAMAEYVKRK 150

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A067GRT5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031573mg PE=4 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.052e-44
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = -2

Query:  241 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 477
            K+D+KMPKKPPTAFFYFLEDFRK FQEQNP IKSMR IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA+YIKRK
Sbjct:   61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: V4TQU5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017037mg PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.021e-43
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = -2

Query:  241 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 477
            K+D+KMPKKPPTAFFYFLEDFRK FQEQNP IKSMR IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA+YIKRK
Sbjct:   61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: V4UA74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017037mg PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.225e-43
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = -2

Query:  241 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 477
            K+D+KMPKKPPTAFFYFLEDFRK FQEQNP IKSMR IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA+YIKRK
Sbjct:   40 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 118

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0D2SZH9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G042300 PE=4 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.738e-42
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = -2

Query:  322 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYE 618
            TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLK+KTKIDAKMPKKPPTAFFYFLEDFRK+FQEQNP IKSMRDIGKACGEKWKTMTYE
Sbjct:   26 TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLKKKTKIDAKMPKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYE 124

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB3_ARATH (High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.054e-14
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = -2

Query:  244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471
            D   PK+P +AFF F+EDFR  ++E++P  KS+  +GKA GEKWK+++  EK  Y   A +++ E+++ M  Y K+
Sbjct:   31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB7_ARATH (High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.306e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = -2

Query:  262 PKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAM 459
            PK+P TAFF F+ DFRK F+ ++ G  + +D  K  GEKWK++T EEK  Y D A E +AE+++++
Sbjct:  115 PKRPLTAFFIFMSDFRKTFKSEHNGSLA-KDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSL 179

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB3_BOVIN (High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 1.074e-8
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = -2

Query:  253 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEY 471
            D   PK+PP+ FF F  +FR + +  NPGI S+ D+ K  GE W  ++  EK  Y + A + + ++++ +A+Y
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADY 160

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGT_ONCMY (High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 1.135e-8
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = -2

Query:  253 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEY 471
            D   PK+P +AFF F  DFR + + + PG+ S+ D+ K  GEKW  +T E+KV Y   A+  + ++++ +  Y
Sbjct:   90 DPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAY 161

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB3_MOUSE (High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3)

HSP 1 Score: 56.6102 bits (135), Expect = 2.291e-8
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = -2

Query:  253 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEY 471
            D   PK+PP+ FF F  +FR + +  NPGI S+ D+ K  GE W  ++  EK  Y   A + + ++++ +A+Y
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADY 160

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB3_CHICK (High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=3)

HSP 1 Score: 56.6102 bits (135), Expect = 2.595e-8
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = -2

Query:  253 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEY 471
            D   PK+PP+ FF F  +FR + +  NPGI S+ D+ K  GE W  ++  EK  Y + A + + ++++ +A+Y
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADY 160

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: NHP6_YARLI (Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NHP6 PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 4.089e-8
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = -2

Query:  253 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEY 471
            D   PK+  +A+ +F  D R   +  NPGI +   +GKA GEKWKT+T  EKV Y + AT  +  ++   A Y
Sbjct:   21 DPNAPKRALSAYMFFANDNRDAIRADNPGI-AFGQVGKALGEKWKTLTDAEKVPYEEKATADKKRYEDEKAAY 92

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB3_HUMAN (High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4)

HSP 1 Score: 55.8398 bits (133), Expect = 4.097e-8
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = -2

Query:  253 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEY 471
            D   PK+PP+ FF F  +FR + +  NPGI S+ D+ K  GE W  +   EK  Y   A + + ++++ +A+Y
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADY 160

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: NHP6_DEBHA (Non-histone chromosomal protein 6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NHP6 PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.166e-7
Identity = 27/76 (35.53%), Postives = 44/76 (57.89%), Query Frame = -2

Query:  244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471
            D   PK+  +A+ +F  + R   + +NPGI S   +GK  GEKWK +T E+K+ Y + A   +  +++  AEY K+
Sbjct:   15 DPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKALTPEDKIPYENKADTDKKRYEKEKAEYAKK 89

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: NHP6_EMENI (Non-histone chromosomal protein 6 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nhp6 PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.706e-7
Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = -2

Query:  253 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEY 477
            K D   PK+  +A+ +F  D R + +E+NPGI S   +GK  GEKWK+++ +E+  Y D A   +  ++   A Y
Sbjct:   21 KKDPNAPKRGLSAYMFFANDNRDKVREENPGI-SFGQVGKMLGEKWKSLSDKERKPYEDKAAADKKRYEDEKAAY 94

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2UJP7_GOSRA	1.590e-61	96.83	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2REF3_GOSRA	1.832e-61	96.83	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061GEA9_THECC	5.653e-57	82.68	HMG-box DNA-binding family protein isoform 1 OS=Th...	[more]
A0A0D2ULQ9_GOSRA	2.663e-55	96.67	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
I3S5Q5_LOTJA	5.825e-46	64.00	Uncharacterized protein OS=Lotus japonicus PE=2 SV...	[more]
A0A059CC67_EUCGR	8.136e-46	68.85	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
A0A067GRT5_CITSI	5.052e-44	92.41	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4TQU5_9ROSI	1.021e-43	92.41	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
V4UA74_9ROSI	1.225e-43	92.41	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A0D2SZH9_GOSRA	1.738e-42	96.97	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 21


Match Name	E-value	Identity	Description
HMGB3_ARATH	4.054e-14	42.11	High mobility group B protein 3 OS=Arabidopsis tha...	[more]
HMGB7_ARATH	2.306e-11	46.97	High mobility group B protein 7 OS=Arabidopsis tha...	[more]
HMGB3_BOVIN	1.074e-8	35.62	High mobility group protein B3 OS=Bos taurus GN=HM...	[more]
HMGT_ONCMY	1.135e-8	36.99	High mobility group-T protein OS=Oncorhynchus myki...	[more]
HMGB3_MOUSE	2.291e-8	35.62	High mobility group protein B3 OS=Mus musculus GN=...	[more]
HMGB3_CHICK	2.595e-8	35.62	High mobility group protein B3 OS=Gallus gallus GN...	[more]
NHP6_YARLI	4.089e-8	39.73	Non-histone chromosomal protein 6 OS=Yarrowia lipo...	[more]
HMGB3_HUMAN	4.097e-8	35.62	High mobility group protein B3 OS=Homo sapiens GN=...	[more]
NHP6_DEBHA	1.166e-7	35.53	Non-histone chromosomal protein 6 OS=Debaryomyces ...	[more]
NHP6_EMENI	2.706e-7	36.00	Non-histone chromosomal protein 6 OS=Emericella ni...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 96..167 e-value: 9.4E-22 score: 88.3
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 97..165 e-value: 2.4E-19 score: 69.4
IPR009071	High mobility group box domain	GENE3D	1.10.30.10		coord: 96..169 e-value: 3.8E-20 score: 71.7
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 97..166 score: 17.649
IPR009071	High mobility group box domain	SUPERFAMILY	47095	HMG-box	coord: 81..167
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 80..185 coord: 11..23
None	No IPR available	PANTHER	PTHR13711:SF200	HIGH MOBILITY GROUP B PROTEIN 14	coord: 80..185 coord: 11..23
None	No IPR available	SIGNALP_GRAM_POSITIVE	SignalP-TM	SignalP-TM	coord: 1..22 score: 0.483

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0019901 ID=g.arboreum_cottongen_reftransV1_0019901; Name=g.arboreum_cottongen_reftransV1_0019901; organism=Gossypium arboreum; type=contig; length=862bp
GTCAGATTAACGTTCAAGTCTGCGTGACAATAATATATATGTAAGAACTA
TCTCCAAGCAGTGATTTACACAAAAATGATACAGGGGTGAACATATTTGC
CTACATTAATATGCTACTCATATAAGTCATAATTAAACCACTACATCTAT
GCATTTCCTGGTACAACACCACCTAAGGTTTATATATATTTATTCATCAA
ACTCCGAATCATCTTCGGTTTCTTCATCTTCGCCACTTTCCTTTCTTTTA
ATGTATTCCGCCATGGCTCTGTCAAACTCTGCTCGTTTCTCGGTTGCAAT
ATCGTAATATTTAACTTTCTCCTCGTATGTCATTGTCTTCCACTTCTCAC
CACATGCCTTCCCAATATCGCGCATTGACTTGATACCCGGATTCTGCTCT
TGAAATTCCTTACGAAAATCCTCCAAGAAGTAAAAGAAAGCAGTGGGGGG
TTTCTTAGGCATTTTAGCATCGATTTTTGTTTTCCTCTTCAGCTTCGATT
TGGGTCTTGACTTCGACTTGGGTCTCTTTTCTCTCTCGCTAACAACACTC
TCTTCAGCTGTCTTCTTCATTTTCTCACTTGATTTTACCCTTAACGCCAT
TTGATGATTGGAGGCTGTTGATGGGTTCTTAGCGGAAGTAACGGAGGTTG
AAGATGAACGATCATTTTTCGACTTTGAAGCTTTCTTCGCCATTTTTTTT
CTCCTTTCTATTTCTAAGACAGGTAGGAGATGGAGACAAATACCCAGAGC
TTGTGCGTTGCTTAGTGTTGGCTGGCTCTCACCAGTGAAGCAGTTACCAC
CACAACTCGACTGTTTCCGGTGGGAAGGAGCTGGGATTTGGACTTCCACG
GGTGAGGGTCAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR009071	HMG_box_dom

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g.arboreum_cottongen_reftransV1_0019901, g.arboreum_cottongen_reftransV1_0019901 (contig) Gossypium arboreum

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