g.arboreum_cottongen_reftransV1_0012644, g.arboreum_cottongen_reftransV1_0012644 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0012644
Unique Nameg.arboreum_cottongen_reftransV1_0012644
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length465
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
Chr8chromosomeg.arboreum_cottongen_reftransV1_0012644:1..465 .
Chr8:103563427..103563891 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: W9SBT8_9ROSA (Histone H2B OS=Morus notabilis GN=L484_011774 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.513e-46
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA
Sbjct:   55 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 129
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: F4YF90_CAMSI (Histone H2B OS=Camellia sinensis PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.549e-46
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA
Sbjct:   47 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 121
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: A0A068UKK4_COFCA (Histone H2B OS=Coffea canephora GN=GSCOC_T00028170001 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 6.341e-46
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA
Sbjct:   57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 131
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: S8EFG8_9LAMI (Histone H2B (Fragment) OS=Genlisea aurea GN=M569_03437 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.989e-46
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA
Sbjct:   57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 131
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: A0A0B2SXJ1_GLYSO (Histone H2B OS=Glycine soja GN=glysoja_025369 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.331e-46
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA
Sbjct:   48 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 122
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: F6GV41_VITVI (Histone H2B OS=Vitis vinifera GN=VIT_06s0004g04230 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.501e-46
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA
Sbjct:   55 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 129
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: A0A061FP74_THECC (Histone H2B OS=Theobroma cacao GN=TCM_043377 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.567e-46
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA
Sbjct:   52 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 126
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: Q9M3H6_CICAR (Histone H2B OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.655e-46
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA
Sbjct:   48 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 122
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: M1CM33_SOLTU (Histone H2B OS=Solanum tuberosum GN=PGSC0003DMG400027363 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.068e-46
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA
Sbjct:   53 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 127
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Match: A9PDD5_POPTR (Histone H2B OS=Populus trichocarpa GN=POPTR_0008s03050g PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.095e-46
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA
Sbjct:   52 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 126
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B5_WHEAT (Histone H2B.5 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.362e-43
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELA
Sbjct:   45 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELA 119
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSJ (Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.273e-43
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELA
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELA 133
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSI (Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.273e-43
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELA
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELA 133
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B1_WHEAT (Histone H2B.1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 2.681e-43
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELA
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELA 135
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSJ (Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.157e-43
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 2 
Query:  239 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELA 463
            SVETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELA
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELA 136
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
W9SBT8_9ROSA4.513e-46100.00Histone H2B OS=Morus notabilis GN=L484_011774 PE=3... [more]
F4YF90_CAMSI5.549e-46100.00Histone H2B OS=Camellia sinensis PE=2 SV=1[more]
A0A068UKK4_COFCA6.341e-46100.00Histone H2B OS=Coffea canephora GN=GSCOC_T00028170... [more]
S8EFG8_9LAMI6.989e-46100.00Histone H2B (Fragment) OS=Genlisea aurea GN=M569_0... [more]
A0A0B2SXJ1_GLYSO7.331e-46100.00Histone H2B OS=Glycine soja GN=glysoja_025369 PE=3... [more]
F6GV41_VITVI7.501e-46100.00Histone H2B OS=Vitis vinifera GN=VIT_06s0004g04230... [more]
A0A061FP74_THECC7.567e-46100.00Histone H2B OS=Theobroma cacao GN=TCM_043377 PE=3 ... [more]
Q9M3H6_CICAR7.655e-46100.00Histone H2B OS=Cicer arietinum PE=2 SV=1[more]
M1CM33_SOLTU9.068e-46100.00Histone H2B OS=Solanum tuberosum GN=PGSC0003DMG400... [more]
A9PDD5_POPTR9.095e-46100.00Histone H2B OS=Populus trichocarpa GN=POPTR_0008s0... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0012644 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
H2B5_WHEAT1.362e-4393.33Histone H2B.5 OS=Triticum aestivum PE=1 SV=3[more]
H2B2_ORYSJ2.273e-4393.33Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B2_ORYSI2.273e-4393.33Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B1_WHEAT2.681e-4393.33Histone H2B.1 OS=Triticum aestivum PE=1 SV=3[more]
H2B8_ORYSJ4.157e-4393.33Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 60..78
score: 80.55
coord: 101..118
score: 79.1
coord: 79..99
score: 75.74
coord: 118..130
score: 85.44
IPR000558Histone H2BSMARTSM00427h2b3coord: 50..130
e-value: 3.7E-50
score: 182.6
IPR000558Histone H2BPANTHERPTHR23428HISTONE H2Bcoord: 13..130
IPR009072Histone-foldGENE3D1.10.20.10coord: 30..130
e-value: 3.3E-47
score: 159.1
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 39..130
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 2..123
e-value: 3.6E-23
score: 82.3

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0012644 ID=g.arboreum_cottongen_reftransV1_0012644; Name=g.arboreum_cottongen_reftransV1_0012644; organism=Gossypium arboreum; type=contig; length=465bp
CACCGCTCCCCCGCCACAGCTACCAAAATTTCCCAAACTAACTTTTAAAG
CAAACAAATTTTACCTTTACTAAATGGCCCCCAAAGCTGAGAAAAAGCCA
GCCGAAAAGAAACCGGCGGAGGAGAAAAAGACCACCGTTGCCGAGAAATC
CCCGGCGGAGAAGAAACCGAAGGCCGGCAAGAAGCTTCCAAAAGAAGGCG
GTGCCGCCGCTGACAAGAAGAAGAAGAAGGCCAAGAAGAGTGTGGAGACT
TACAAGATCTACATCTTCAAGGTTCTTAAACAAGTTCACCCTGATATCGG
GATCTCAAGCAAAGCTATGGGGATAATGAACAGTTTCATTAACGATATCT
TTGAGAAACTTGCTCAAGAAGCTTCGAGGCTCGCGAGGTACAACAAGAAG
CCCACGATTACTTCAAGGGAAATTCAGACCGCTGTTAGGCTCGTTCTTCC
CGGTGAGCTTGCGAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity