g.arboreum_cottongen_reftransV1_0004217, g.arboreum_cottongen_reftransV1_0004217 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0004217
Unique Nameg.arboreum_cottongen_reftransV1_0004217
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length938
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr8chromosomeg.arboreum_cottongen_reftransV1_0004217:1..938 .
Chr8:120629304..120630241 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: F6HQ94_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00180 PE=4 SV=1)

HSP 1 Score: 417.542 bits (1072), Expect = 3.544e-141
Identity = 214/304 (70.39%), Postives = 261/304 (85.86%), Query Frame = 2
Query:    5 SAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDT--GSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            S+ S+P   RLSA++RL+GLARDSDKNRS+I SH+ +EVL+ ++FSD+   S+EL  E+LA+LVMF L+ESEC  + S P+RV +L  +LFH+SIEVR+NSA+LIE V++GTRS DLRAQI N DEIFEG+  IL    +YPRAL++G++ALFALCL KQ+RHKAV AGA   LIDRLAD +KC+ ERALAT+ELLCR+P+GC AFAAHALTVPLLV+ ILK+SDRATEYAAGAL++LCS +E SQREAVSAGV+TQLLLLVQSDCTERAKRKAQ+LLKLLRDSWPEDS+ NSDDF CS++VPF
Sbjct:  112 SSQSNPSHTRLSAVKRLRGLARDSDKNRSIIGSHNVQEVLLPVIFSDSECDSAELKHESLALLVMFPLSESECAFVASQPDRVAHLVSLLFHASIEVRVNSAALIEIVVAGTRSLDLRAQISNVDEIFEGITGILNYPLAYPRALKVGIKALFALCLAKQSRHKAVAAGAVTALIDRLADFEKCDVERALATVELLCRVPAGCAAFAAHALTVPLLVRKILKVSDRATEYAAGALLSLCSAAEQSQREAVSAGVVTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPEDSVVNSDDFGCSDVVPF 415          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: I1JE03_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 2.133e-140
Identity = 218/306 (71.24%), Postives = 267/306 (87.25%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIG-NSDDFACSE--IVPF 910
            AS+ S+P   RLS++RRL+ LARDSDKNRS+I+SH+ R++L+ IVF++ GS EL  E+LA+LVMF L ESEC S+ SD  ++ YLSRML H+S +VR+NSA+LIE V++GT SP+LRA++ + DEI++GVVD+LR+  S+PRAL+IG++ALFALCLVK TR KAV AG PA+L+DRLAD +KC+AERALAT+ELLCRIP+GC AFA HALTVP+LVK ILKISDRATEYAAGAL++LCSESE  QREAV+AGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWP+DSIG NSDDFACS+  +VPF
Sbjct:  111 ASSGSAPAHLRLSSIRRLRQLARDSDKNRSLIASHNVRQILLPIVFNN-GSDELKNESLALLVMFPLGESECASLASDSVKIGYLSRMLTHNSFDVRVNSAALIEIVVAGTHSPELRAEVSSVDEIYDGVVDLLRSPISHPRALKIGIKALFALCLVKNTRQKAVDAGTPAVLVDRLADFEKCDAERALATVELLCRIPAGCEAFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDSIGNNSDDFACSQVVVVPF 415          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A5B4U0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026443 PE=4 SV=1)

HSP 1 Score: 417.157 bits (1071), Expect = 2.780e-140
Identity = 214/304 (70.39%), Postives = 261/304 (85.86%), Query Frame = 2
Query:    5 SAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDT--GSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            S+ S+P   RLSA++RL+GLARDSDKNRS+I SH+ +EVL+ ++FSD+   S+EL  E+LA+LVMF L+ESEC  + S P+RV +L  +LFH+SIEVR+NSA+LIE V++GTRS DLRAQI N DEIFEG+  IL    +YPRAL++G++ALFALCL KQ+RHKAV AGA   LIDRLAD +KC+ ERALAT+ELLCR+P+GC AFAAHALTVPLLV+ ILK+SDRATEYAAGAL++LCS +E SQREAVSAGV+TQLLLLVQSDCTERAKRKAQ+LLKLLRDSWPEDS+ NSDDF CS++VPF
Sbjct:  173 SSQSNPSHTRLSAVKRLRGLARDSDKNRSIIGSHNVQEVLLPVIFSDSECDSAELKHESLALLVMFPLSESECAFVASQPDRVAHLVSLLFHASIEVRVNSAALIEIVVAGTRSLDLRAQISNVDEIFEGITGILNYPLAYPRALKVGIKALFALCLAKQSRHKAVAAGAVTALIDRLADFEKCDVERALATVELLCRVPAGCAAFAAHALTVPLLVRKILKVSDRATEYAAGALLSLCSAAEQSQREAVSAGVVTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPEDSVVNSDDFGCSDVVPF 476          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A067EXD2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014817mg PE=4 SV=1)

HSP 1 Score: 411.764 bits (1057), Expect = 6.789e-139
Identity = 224/308 (72.73%), Postives = 263/308 (85.39%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTG-----SSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            AS+ S+ +  RLSALRRL+GLARDSDKNRS+ISSH+ R +L  + F++       S EL+ E+LA+LVMF L E+EC  I SD +++  LS +LFHSSIEVR+NSA+LIE VL+G RS +LRAQI N DEIFEGV+DIL+NL+SYPR L++G++ALFALCLVKQTR+KAV AGA   L+DRLAD DKC+AERALAT+ELLCRIP+GC  FA HALTVPLLVKTILKISDRATEYAAGAL ALCS SE  QR+AVSAGVLTQLLLLVQSDCT+RAKRKAQ+LLKLLRDSWP+DSIGNSDDFACSE+VPF
Sbjct:  111 ASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDDFACSEVVPF 418          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: V4SBN4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028522mg PE=4 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 1.551e-138
Identity = 223/308 (72.40%), Postives = 262/308 (85.06%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTG-----SSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            AS+ S+ +  R+SALRRL+GLARDSDKNR +ISSH+ R +L  + F++       S EL+ E+LA+LVMF L E+EC  I SD +++  LS +LFHSSIEVR+NSA+LIE VL+G RS +LRAQI N DEIFEGV+DIL+NL+SYPR L++G++ALFALCLVKQTRHKAV AGA   L+DRLAD DKC+AERALAT+ELLCRIP+GC  FA HALTVPLLVKTILKISDRATEYAAGAL ALCS SE  QR+AVSAGVLTQLLLLVQSDCT+RAKRKAQ+LLKLLRDSWP+DSIGNSDDFACSE+VPF
Sbjct:  111 ASSESNTYGSRMSALRRLRGLARDSDKNRCLISSHNVRAILSQVFFTNINVNTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRHKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDDFACSEVVPF 418          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: M1CFU1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400025884 PE=4 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 1.382e-136
Identity = 216/305 (70.82%), Postives = 257/305 (84.26%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS--DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            A+A S+    R++ALRRL+GLARDSDKNRSVIS+++ARE+L+ IVFS  D+ SSEL+ E+LA+L MF L+E EC  + SDP RV YL  MLFH SI+VR+NSA+LIE V++G RS +LRAQI NAD++FEGVV IL    +YPRAL++G++ALFALCLVKQ R +AV AGA   LIDRL D +KC+AERALATIELL RIPSGC A A+HALTVPLLVK ILKIS+RATEYAAGAL++LCS SE +Q+EAV+AGVL QLLLLVQSDCTERAKRKAQMLLK LRD WPEDSI NSDDFACS++VPF
Sbjct:  111 AAAQSNHMNSRVAALRRLRGLARDSDKNRSVISANNAREILLAIVFSRMDSDSSELNHESLAILSMFPLSEPECVFVASDPERVSYLVAMLFHPSIDVRVNSAALIEIVVAGMRSSELRAQISNADDVFEGVVGILNYPLAYPRALKVGIKALFALCLVKQHRQRAVTAGAVEALIDRLQDFEKCDAERALATIELLSRIPSGCAALASHALTVPLLVKIILKISERATEYAAGALLSLCSASEQAQKEAVAAGVLIQLLLLVQSDCTERAKRKAQMLLKQLRDCWPEDSIANSDDFACSDVVPF 415          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: K4B314_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g107980.2 PE=4 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 1.645e-136
Identity = 213/305 (69.84%), Postives = 256/305 (83.93%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS--DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            A+A S+    R++ALRRL+GLARDS+KNRSVIS+++ARE+L+ IVFS  D+ +SEL  E+LA+L MF L+E EC  + SDP RV YL  MLFH SI+VR+NSA+LIE V++G RSP+ RAQI NAD++FEGVV IL    +YPRAL++G++ALFALCLVKQ R +AV AGA   LIDRL D +KC+AERALATIELL RIPSGC A A+HALTVPLLVK ILKIS+RATEYAAGAL++LCS SE +Q+EAV+AGVL QLLLLVQSDCTERAKRKAQMLLK LRD WPEDSI N+DDFACS++VPF
Sbjct:  111 AAAQSNHMNSRVAALRRLRGLARDSEKNRSVISANNAREILLAIVFSRMDSDASELHHESLAILSMFPLSEPECVFVASDPGRVGYLVAMLFHPSIDVRVNSAALIETVVAGMRSPEFRAQISNADDVFEGVVGILNYPLAYPRALKVGIKALFALCLVKQHRQRAVSAGAVEALIDRLQDFEKCDAERALATIELLSRIPSGCAALASHALTVPLLVKIILKISERATEYAAGALLSLCSASEQAQKEAVAAGVLIQLLLLVQSDCTERAKRKAQMLLKQLRDCWPEDSIANTDDFACSDVVPF 415          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: V7C5W9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G048200g PE=4 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 2.894e-136
Identity = 210/285 (73.68%), Postives = 252/285 (88.42%), Query Frame = 2
Query:   62 LARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSE--IVPF 910
            LARDSDKNRS+ISSH+ R++L+ IVF   G+SEL+ EALA+LV+F L ESEC ++ SD  +V YLSR+L H+S++VR+NSA+LIE V++GT SP+LRA +   DEI++GVVD+LR+  SYPRAL+IG++ALFALCLVKQTRHKAV AGAPA+L+DRLAD +KC+AERALAT+ELLCRIP+GC AFA HALTVP+LVK ILKIS RATEYAAGAL++LCSESE  QREAV+AGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWP+D IGNSDDFACS+  +VPF
Sbjct:  131 LARDSDKNRSLISSHNVRQILLPIVFH--GASELNHEALALLVLFPLGESECAALASDSEKVNYLSRLLSHNSLDVRVNSAALIEIVVAGTHSPELRACVSEVDEIYDGVVDLLRSPISYPRALKIGIKALFALCLVKQTRHKAVAAGAPAVLVDRLADFEKCDAERALATVELLCRIPAGCEAFAGHALTVPMLVKIILKISHRATEYAAGALLSLCSESERCQREAVTAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDCIGNSDDFACSQVVVVPF 413          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: I1KM13_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 400.208 bits (1027), Expect = 1.903e-134
Identity = 217/305 (71.15%), Postives = 268/305 (87.87%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSE--IVPF 910
            AS+ S+P   RLS+LRRL+ LARDSDKNRS+I+SH+  ++L+ IVF++ GS ELS E+LA+LVMF L ESEC S+ SD  ++ YLSRML H+S +VR+NSA+L+E V+ GT SP+LRA++ + DEI++GVVD+LR+  S+PRAL+IG++ALFALCLVK TR KAV AGAPA+L+DRLAD +KC+AERALAT+ELLCRIP+GC AFAAHALTVP+LVK ILKIS+RATEYAAGAL++LCSESE  QREAV+AGVLTQLLLL+QSDCTERAKRKAQMLLKLLRDSWP+DS+GNSDDFACS+  +VPF
Sbjct:  111 ASSDSAPAHLRLSSLRRLRQLARDSDKNRSLIASHNLLQILLPIVFNN-GSDELSHESLALLVMFPLGESECASLASDSMKIGYLSRMLAHNSFDVRVNSAALVEIVVVGTHSPELRAEVSSVDEIYDGVVDLLRSPISHPRALKIGIKALFALCLVKNTRQKAVAAGAPAVLVDRLADFEKCDAERALATVELLCRIPAGCAAFAAHALTVPMLVKIILKISNRATEYAAGALLSLCSESERCQREAVAAGVLTQLLLLMQSDCTERAKRKAQMLLKLLRDSWPQDSVGNSDDFACSQVVVVPF 414          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: S8DEF1_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_17045 PE=4 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 5.783e-132
Identity = 199/303 (65.68%), Postives = 249/303 (82.18%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGS--SELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIV 904
            AS+ S     R+SALRRL+GLARDS+KNRSVI++++ R+V I ++F+  GS  SEL++E+L +L MF L E EC  I SD +RV YL  +LFHSSI+VR+NSA+++E  ++G RSP+LRA+I + D +F G+V IL    +YP AL+IG++ALFALCL KQ RH+AV AGA   LIDRLA+ +KC+AERALAT+ELLCR+P GC AFA+HALTVPLLVK ILKISDRATEYAAGAL++LCS SE SQ EAV+AGVLTQL+LLVQSDCTERAKRKAQMLLKLLR+SWP +S+ NSDDFA S++V
Sbjct:  111 ASSGSGNLLSRVSALRRLRGLARDSEKNRSVIAANNGRQVFISLLFAGVGSEPSELNLESLGILSMFSLLEQECLYIASDLDRVRYLVNLLFHSSIDVRVNSAAVVEVTVAGIRSPELRARISSLDGVFRGIVGILNYPLAYPHALKIGIKALFALCLAKQHRHRAVSAGAVESLIDRLAEFEKCDAERALATVELLCRVPDGCAAFASHALTVPLLVKIILKISDRATEYAAGALLSLCSASEQSQGEAVAAGVLTQLILLVQSDCTERAKRKAQMLLKLLRNSWPLESMCNSDDFAGSDVV 413          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.433e-10
Identity = 84/287 (29.27%), Postives = 133/287 (46.34%), Query Frame = 2
Query:   14 SSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESI---GSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAER-ALATIELLCRIPSGCLAFAA--HALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQ--SDCTERAKRKAQMLLKLLRDS 850
            S   + R +A+  ++ L++ S  NR +I+   A  VL+ ++ SD G +E    A+  ++   + E   E I   G+    V  +  +L   S+E R N+A+     L      D    I  A      +VD+L+      R  +    ALF LC+ +  + +AV+AG    L+  L D     +ER A   + +L  + S  +A  A   A  +P L+  + K   R  E AA  L+ LC        + +S G L  ++ L++   D TERAKRKA  LL+LLR S
Sbjct:  352 SQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSD-GDTETQENAVTCILNLSIYEHNKELIMLAGA----VTSIVLVLRAGSMEARENAAA----TLFSLSLADENKIIIGASGAIMALVDLLQY--GSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTD---SSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRD---TEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLRKS 621          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 1.020e-9
Identity = 73/277 (26.35%), Postives = 128/277 (46.21%), Query Frame = 2
Query:   26 QPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS-DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCE-AERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQL--LLLVQSDCTERAKRKAQMLLKLLR 844
            + R +A+  ++ L++ S  NR +I+   A  VL++++ S D  + E ++  +  L +++ N+      G+    V  + ++L   ++E R N+A+     L      D    I         +VD+L N    PR  +    ALF LC+    + +AV+AG    L+  L+D  +    + AL  + +L        A    A T+P L+  +     R  E AA  L++LC        + ++ G L  +  L+ +  + TER KRKA  LL+LLR
Sbjct:  346 EDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYENNKELIMFAGA----VTSIVQVLRAGTMEARENAAA----TLFSLSLADENKIIIGGSGAIPALVDLLEN--GTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAI-VKANTLPALIGILQTDQTRNRENAAAILLSLCKR---DTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.710e-9
Identity = 69/275 (25.09%), Postives = 133/275 (48.36%), Query Frame = 2
Query:   44 LRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSV---EALAVLV-MFQLNESECESIGSDPN-RVVYLSRMLFHSSIEVRINSASLIENVLS--GTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVK-QTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEG-SQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLL 841
            + ++K L  +S+KNR  ++ +    VL D     +G  +L+    E L++L  MF +       + S  + R V  + +L  +   VR N+A +++ +LS   TR      +    + + E +V ++R+  S        + A++ + L K +   + ++ G  ++ ++ + D +    E+ALA ++ +C    G      +AL +PLLVK I K+S+ AT  +   ++ L       +  +AV  G   ++LL++Q    E  K KA  LLK++
Sbjct:  144 IEKIKKLGDESEKNRKCVNENSVGWVLCDCFDKFSGDEKLTFMLNEILSLLTWMFPIGLEGISKLASATSFRCV--AGLLKSTDDSVRQNAAFIMKEILSLDETRVHSFAVE----NGVAEALVKLIRDSVSSSSTKSSLI-AIYQMVLQKPEIASEFLEIGLVSITVEMIVDAENSVCEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMILKLWKTGNTVAVEDAVRLGAFQKVLLVLQVGYGEETKEKATELLKMM 411          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.252e-9
Identity = 78/282 (27.66%), Postives = 126/282 (44.68%), Query Frame = 2
Query:    8 AVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS-DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNL-----NSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLK 835
            A  +P   R SA   ++ LA+ +  NR  I+   A  +L+ ++ + D+   E SV AL  L + + N+    S G+ P  V    ++L   S+E R N+A+ +               + + +++  G +  +  L         R  +    ALF LC+ +  + KA++AG    L   L +      + ALA + +L   P G  A    +  VP LV+ I   S R  E AA  L+ LCS       EA   G++  L+ L   + T+R KRKA  LL+
Sbjct:  362 AYGNPEDQR-SAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIV----QVLKKGSMEARENAAATL-----------FSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEG-KAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLA-GNGTDRGKRKAAQLLE 625          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB20_ARATH (U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 7.453e-8
Identity = 32/108 (29.63%), Postives = 56/108 (51.85%), Query Frame = 2
Query:  521 IDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQ-REAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLL 841
            ++ L D +    E+AL  + ++C    G      + L +P+LVK ILKIS++        +  +C   +GS+  EA+  G   +L++++Q  C E  K K   LLK++
Sbjct:  299 VEMLVDSENSVCEKALTVLNVICETKEGREKVRRNKLVIPILVKKILKISEKKD--LVSVMWKVCKSGDGSEVEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMM 404          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
F6HQ94_VITVI3.544e-14170.39Putative uncharacterized protein OS=Vitis vinifera... [more]
I1JE03_SOYBN2.133e-14071.24Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A5B4U0_VITVI2.780e-14070.39Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067EXD2_CITSI6.789e-13972.73Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4SBN4_9ROSI1.551e-13872.40Uncharacterized protein OS=Citrus clementina GN=CI... [more]
M1CFU1_SOLTU1.382e-13670.82Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
K4B314_SOLLC1.645e-13669.84Uncharacterized protein OS=Solanum lycopersicum GN... [more]
V7C5W9_PHAVU2.894e-13673.68Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
I1KM13_SOYBN1.903e-13471.15Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
S8DEF1_9LAMI5.783e-13265.68Uncharacterized protein OS=Genlisea aurea GN=M569_... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PUB10_ARATH2.433e-1029.27U-box domain-containing protein 10 OS=Arabidopsis ... [more]
PUB11_ARATH1.020e-926.35U-box domain-containing protein 11 OS=Arabidopsis ... [more]
PUB21_ARATH1.710e-925.09U-box domain-containing protein 21 OS=Arabidopsis ... [more]
PUB13_ARATH3.252e-927.66U-box domain-containing protein 13 OS=Arabidopsis ... [more]
PUB20_ARATH7.453e-829.63U-box domain-containing protein 20 OS=Arabidopsis ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 4..266
e-value: 4.7E-18
score: 64.2
NoneNo IPR availablePANTHERPTHR22849WDSAM1 PROTEINcoord: 1..289
NoneNo IPR availablePANTHERPTHR22849:SF52E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATEDcoord: 1..289
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 4..267

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0004217 ID=g.arboreum_cottongen_reftransV1_0004217; Name=g.arboreum_cottongen_reftransV1_0004217; organism=Gossypium arboreum; type=contig; length=938bp
AGCTTCGGCGGTTTCCAGTCCGTTTCAGCCTCGTCTCTCGGCTCTGCGTC
GACTCAAGGGACTGGCAAGAGACTCGGATAAGAACCGGTCCGTTATTTCT
TCACATGACGCACGTGAGGTACTGATAGATATCGTGTTTTCGGATACAGG
CTCGTCGGAGTTGAGCGTGGAGGCGCTTGCGGTTTTAGTGATGTTTCAAC
TCAATGAATCCGAGTGCGAGTCGATTGGTTCGGATCCCAACAGAGTGGTC
TACCTGTCGCGTATGTTGTTCCATTCCTCAATCGAAGTACGAATTAACTC
GGCTTCACTCATCGAAAACGTTCTCTCCGGCACGAGATCGCCGGATCTTC
GAGCTCAGATATGCAATGCGGATGAGATCTTCGAAGGCGTCGTGGACATA
TTAAGGAACCTCAACTCTTATCCTCGCGCGCTGAGAATCGGCGTTCGGGC
TCTCTTCGCCTTGTGCTTAGTGAAGCAAACGAGGCACAAAGCCGTCCAAG
CCGGAGCGCCGGCGATGTTGATCGACCGGTTGGCCGATTTGGACAAGTGC
GAGGCCGAACGAGCTCTGGCGACGATAGAATTGTTGTGCCGGATCCCCTC
CGGGTGTTTGGCGTTCGCGGCGCACGCGCTGACTGTCCCGCTGCTGGTAA
AAACGATACTGAAGATCTCGGACAGGGCTACGGAGTACGCGGCGGGTGCA
CTGATGGCGCTGTGCTCGGAGTCGGAAGGGAGCCAGAGGGAGGCGGTGAG
CGCGGGGGTTCTGACACAGCTGCTATTGCTGGTTCAAAGTGATTGTACGG
AGAGGGCGAAGAGGAAGGCCCAAATGCTTCTTAAGTTGCTTCGGGATTCG
TGGCCCGAAGATTCCATCGGCAATTCGGATGATTTTGCTTGCAGTGAAAT
CGTACCCTTTTGACCATCCCTCTCGCCTCACACCGAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding