g.arboreum_cottongen_reftransV1_0004217, g.arboreum_cottongen_reftransV1_0004217 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0004217
Unique Nameg.arboreum_cottongen_reftransV1_0004217
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length938
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr8chromosomeg.arboreum_cottongen_reftransV1_0004217:1..938 .
Chr8:120629304..120630241 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A0D2S8A2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G045000 PE=4 SV=1)

HSP 1 Score: 592.808 bits (1527), Expect = 0.000e+0
Identity = 298/303 (98.35%), Postives = 300/303 (99.01%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSS+LSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQI NADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPA LIDRLADLDKC+AERALATIELLCRIPSGC AFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF
Sbjct:  114 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSDLSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQISNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPATLIDRLADLDKCDAERALATIELLCRIPSGCSAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 416          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A061E0Y0_THECC (Plant U-box 26 OS=Theobroma cacao GN=TCM_007082 PE=4 SV=1)

HSP 1 Score: 520.39 bits (1339), Expect = 0.000e+0
Identity = 259/305 (84.92%), Postives = 285/305 (93.44%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGS--SELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            AS+VS+PFQ RLSALRRLKGLARDSDKNRSVISSH+ARE+LI+IVFSDTGS  SEL+ EALA+LVMFQL ESEC SI SD N+V+YLS++LFHSSIEVR+NSASLIE V++GTRS DLRAQI N DEIFEGV D+L+NLNSYPRAL+I +RALFALCLVKQTRHKAVQAGA   LIDRLADLDKC+AERALATIELLCRIPSGC AFAAHALTVPLLVKTILKISDRATE++AGAL+ALCSESE SQR+AVSAG+LTQLLLLVQSDCT+RAKRKAQ LLKLLRDSWPEDSIGNSDDFACSE+VPF
Sbjct:  112 ASSVSNPFQSRLSALRRLKGLARDSDKNRSVISSHNAREILINIVFSDTGSGSSELNQEALALLVMFQLTESECASIASDSNKVIYLSKLLFHSSIEVRVNSASLIEIVVAGTRSSDLRAQISNVDEIFEGVTDLLKNLNSYPRALKISIRALFALCLVKQTRHKAVQAGAAETLIDRLADLDKCDAERALATIELLCRIPSGCSAFAAHALTVPLLVKTILKISDRATEHSAGALVALCSESEQSQRDAVSAGILTQLLLLVQSDCTDRAKRKAQTLLKLLRDSWPEDSIGNSDDFACSEVVPF 416          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A0D2PYI4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G237200 PE=4 SV=1)

HSP 1 Score: 486.878 bits (1252), Expect = 1.771e-168
Identity = 256/305 (83.93%), Postives = 278/305 (91.15%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSD--TGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            AS VS+PF  R SAL RLKGLAR+S+KNR+VI SH+ARE+L+ I+FSD  +GSSELS EALAVLVMFQL ESEC  IGSD NRVVYLS +LFHSSIEVR+NSASLIE VL+G RS DLRA+ICN DEIF GV DIL+NL+SYPRALRIGVRALFALCL+KQTRHKAVQAGA   LIDRL DLDKC+AERALATIELLCRIPSGC AFA+HALTVPLLVKTIL+ISDRATEYAAGALMALCSESE SQ++AVSAGVLTQLLLLVQSDCT+RAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF
Sbjct:  112 ASTVSNPFSVRHSALVRLKGLARESEKNRNVICSHEAREILMRILFSDVSSGSSELSQEALAVLVMFQLTESECTGIGSDSNRVVYLSELLFHSSIEVRVNSASLIETVLAGMRSSDLRAEICNVDEIFAGVTDILKNLSSYPRALRIGVRALFALCLLKQTRHKAVQAGAAETLIDRLTDLDKCDAERALATIELLCRIPSGCSAFASHALTVPLLVKTILRISDRATEYAAGALMALCSESEQSQKDAVSAGVLTQLLLLVQSDCTDRAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 416          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: B9HS21_POPTR (U-box domain-containing family protein OS=Populus trichocarpa GN=POPTR_0009s10310g PE=4 SV=1)

HSP 1 Score: 464.151 bits (1193), Expect = 1.451e-159
Identity = 229/303 (75.58%), Postives = 266/303 (87.79%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            A++ S+P   RLSALRRL+GLARDSDKNRSVISSH+ REVL+++VFS + SS+LS E+LA+LV+F L E +C  I S+P R+ YL+ +LFHSSIEVR+NSA+LIENV++GTRS DLR QI N + IFEGV++IL+N  S PRAL+IG++ALFALCLVKQTRHKAV AGA   LIDRLAD DKC+AERALATIELLCRI  GC AFAAHALTVPLLVKTILKISDRATEYAAGAL+ALCS SE SQ+EAV AG+LTQLLLLVQSDCT+RAKRKAQMLLKLLRD+WPEDS+GNSDDF CSE+VPF
Sbjct:  111 AASASNPTHSRLSALRRLRGLARDSDKNRSVISSHNVREVLVNLVFSTSQSSDLSHESLAILVLFPLTEFDCVGISSEPERISYLANLLFHSSIEVRVNSAALIENVIAGTRSSDLRLQISNTEIIFEGVIEILKNPLSSPRALKIGIKALFALCLVKQTRHKAVTAGAAETLIDRLADFDKCDAERALATIELLCRIQVGCAAFAAHALTVPLLVKTILKISDRATEYAAGALLALCSASELSQKEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDAWPEDSVGNSDDFLCSEVVPF 413          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A9PAR6_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 463.766 bits (1192), Expect = 1.727e-159
Identity = 229/303 (75.58%), Postives = 266/303 (87.79%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            A++ S+P   RLSALRRL+GLARDSDKNRSVISSH+ REVL+++VFS + SS+LS E+LA+LV+F L E +C  I S+P R+ YL+ +LFHSSIEVR+NSA+LIENV++GTRS DLR QI N + IFEGV++IL+N  S PRAL+IG++ALFALCLVKQTRHKAV AGA   LIDRLAD DKC+AERALATIELLCRI  GC AFAAHALTVPLLVKTILKISDRATEYAAGAL+ALCS SE SQ+EAV AG+LTQLLLLVQSDCT+RAKRKAQMLLKLLRD+WPEDS+GNSDDF CSE+VPF
Sbjct:  111 AASASNPTHSRLSALRRLRGLARDSDKNRSVISSHNVREVLVNLVFSTSQSSDLSHESLAILVLFPLTEFDCVGISSEPERISYLANLLFHSSIEVRVNSAALIENVIAGTRSSDLRLQISNTEIIFEGVIEILKNPLSSPRALKIGIKALFALCLVKQTRHKAVTAGAAETLIDRLADFDKCDAERALATIELLCRIQVGCAAFAAHALTVPLLVKTILKISDRATEYAAGALLALCSASELSQKEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDAWPEDSVGNSDDFLCSEVVPF 413          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A067KJ43_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14786 PE=4 SV=1)

HSP 1 Score: 462.996 bits (1190), Expect = 4.015e-159
Identity = 230/306 (75.16%), Postives = 269/306 (87.91%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVF---SDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            AS+ S+ +Q RLSALRRL+GLARDSDKNRSVISSH+AREV I++VF   +D+ SS+L+ EALA+L+MF L+ES+C  I SD  R+ YL  +LFH SIEVR+NSA+LIE V++GT+S DLRAQI + DEIFEGV+++L+N  SYPRAL+IG++ALFALCLVKQTRHKAV AGA  +LIDRLAD DKC+AERALATIELLCR+P+GC AFA HALTVPLLVK ILKISDRATEYAAGAL+ALC+ SE SQREAVSAG+LTQLLLLVQSDCT+RAKRKAQMLLKLLRDSWPEDS  NSDDF CSE+VPF
Sbjct:  111 ASSESNLYQSRLSALRRLRGLARDSDKNRSVISSHNAREVFINLVFANCTDSNSSDLNHEALALLIMFPLSESDCVCIASDSGRINYLVNLLFHISIEVRVNSAALIEIVVAGTKSSDLRAQISSVDEIFEGVIEMLKNPISYPRALKIGIKALFALCLVKQTRHKAVSAGAADILIDRLADFDKCDAERALATIELLCRVPTGCTAFAGHALTVPLLVKKILKISDRATEYAAGALLALCTSSEQSQREAVSAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDSWPEDSSANSDDFICSEVVPF 416          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: B9N4Z3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s14720g PE=4 SV=1)

HSP 1 Score: 460.299 bits (1183), Expect = 5.120e-158
Identity = 229/303 (75.58%), Postives = 263/303 (86.80%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910
            A++ S+P   RLSALRRL+GLARDSDKNRS+ISSH+ RE+L+++VFS + S ELS E+LA+LVMF L E +C +I SDP R+  L+ +LFHSSIEVR+NSA+LIENV++GTRS DLR QI N + IFEGV+DIL+N  S PRAL+IG++ LFALCLVKQTRHKAV AGA   LIDRLADLDKC+AERALATIELLCRI  GC AF AHALTVPLLVKTILKISDRATEYAAGAL+ALCS SE SQ+EAV AG+LTQLLLLVQSDCT+RAKRKAQMLLKLLRDSWPEDS GNSDDF CSE+VPF
Sbjct:  111 AASESNPTHSRLSALRRLRGLARDSDKNRSLISSHNVREILVNLVFSSSQSLELSHESLAILVMFPLTEFDCVAIASDPERISCLANLLFHSSIEVRVNSAALIENVIAGTRSSDLRLQISNMEIIFEGVIDILKNPLSSPRALKIGIKGLFALCLVKQTRHKAVSAGAAETLIDRLADLDKCDAERALATIELLCRIQVGCAAFVAHALTVPLLVKTILKISDRATEYAAGALLALCSASEQSQKEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDSWPEDSAGNSDDFVCSEVVPF 413          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: W9S676_9ROSA (U-box domain-containing protein 26 OS=Morus notabilis GN=L484_027509 PE=4 SV=1)

HSP 1 Score: 457.988 bits (1177), Expect = 4.120e-157
Identity = 227/306 (74.18%), Postives = 273/306 (89.22%), Query Frame = 2
Query:    2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS--DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSE-IVPF 910
            AS+ S+P   RLSALRRL+GLARDSDKNRSVISS ++REVL+DIVF+   + SSELS EALAV VMF  +E EC ++ S+P+RV YL+R+LFHSSI+VR+NSA++IE V++GTR+P+LR+QI N DEIFEGV++ILR+  +YPRAL++G++ALFA+CLVKQTRHKA+ AGA  +LIDRLAD +KC+AERALAT+ELLCRIP+GC A AAHALTVPLLVK ILKISDRATEYAAGAL++LCS SE SQREAV+AG+LTQLLLLVQSDCT+RAKRKAQ+LLKLLRDSWPEDSI NSDDFACSE +VPF
Sbjct:  111 ASSESTPAPTRLSALRRLRGLARDSDKNRSVISSLNSREVLLDIVFAGASSDSSELSREALAVAVMFPFSEIECAAVASEPDRVAYLTRLLFHSSIDVRVNSAAMIEIVVAGTRTPELRSQISNVDEIFEGVIEILRSPIAYPRALKVGIKALFAMCLVKQTRHKAIAAGAAEILIDRLADFEKCDAERALATVELLCRIPAGCSALAAHALTVPLLVKIILKISDRATEYAAGALVSLCSASEQSQREAVAAGILTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPEDSIRNSDDFACSEVVVPF 416          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: M5VJA2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006352mg PE=4 SV=1)

HSP 1 Score: 430.639 bits (1106), Expect = 1.949e-146
Identity = 221/302 (73.18%), Postives = 268/302 (88.74%), Query Frame = 2
Query:   14 SSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGS--SELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSE-IVPF 910
            S+P+  RLSALRRL+GLARD DKNRS ISS ++RE+L+ +VF+DTGS  SEL+ EALA+LV+F L ES+C ++ SDP+RV YL++++ HSS+EVR+NSA+LIENVL+G+R+ +LRA+I N DEI +GVV ILRN  +YPRAL+IG++ALFALCLVKQTR+KAV AGAP  LI+ LAD +KC++ERALATIELLCR+P GC AFAAHALTVPLLVKTILKISDRATEYAAGAL++LCS SE SQ +AV+AGVLTQLLLLVQSDCT+RAKRKAQ+LLKLLRDSWPEDS+GNSDDF CSE +VPF
Sbjct:  115 SNPYPTRLSALRRLRGLARDLDKNRSTISSQNSREILVQLVFADTGSESSELTHEALALLVLFPLPESDCAAVASDPDRVAYLAQLVQHSSMEVRVNSAALIENVLAGSRTAELRAEISNVDEIHQGVVSILRNPIAYPRALKIGIKALFALCLVKQTRNKAVSAGAPETLINTLADFEKCDSERALATIELLCRVPDGCTAFAAHALTVPLLVKTILKISDRATEYAAGALLSLCSASEKSQNDAVAAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPEDSVGNSDDFVCSELVVPF 416          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A0A0L6F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G203270 PE=4 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 3.859e-143
Identity = 212/297 (71.38%), Postives = 255/297 (85.86%), Query Frame = 2
Query:   41 ALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS------DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEI-VPF 910
            ALRRLKGLARDSDKNRS+ISS +ARE+L+D+VFS      D+ S +LS E+LA+LVM  L ESEC  + SDP R+ YLS +LF SSIE RIN+A+LIE V++GTR+ +LR QIC  DE+FEGVV+ILR+  +YPRAL++GV+ALFALCLVKQTRHKAV AGA  ++IDR  DL+K +AERALATIEL+CRIP+GC AFAAHALTVPLLVK ILKISDRATE A GAL++LCS SE ++REAV+AG+LTQLLLLVQSDCTER KRK+Q+LLKLLRDSWP++S+GNSDD+ACSEI VPF
Sbjct:  128 ALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSGSDSFSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEDRINAAALIETVIAGTRASELRTQICGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDLEKYDAERALATIELICRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYACSEIVVPF 424          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.433e-10
Identity = 84/287 (29.27%), Postives = 133/287 (46.34%), Query Frame = 2
Query:   14 SSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESI---GSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAER-ALATIELLCRIPSGCLAFAA--HALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQ--SDCTERAKRKAQMLLKLLRDS 850
            S   + R +A+  ++ L++ S  NR +I+   A  VL+ ++ SD G +E    A+  ++   + E   E I   G+    V  +  +L   S+E R N+A+     L      D    I  A      +VD+L+      R  +    ALF LC+ +  + +AV+AG    L+  L D     +ER A   + +L  + S  +A  A   A  +P L+  + K   R  E AA  L+ LC        + +S G L  ++ L++   D TERAKRKA  LL+LLR S
Sbjct:  352 SQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSD-GDTETQENAVTCILNLSIYEHNKELIMLAGA----VTSIVLVLRAGSMEARENAAA----TLFSLSLADENKIIIGASGAIMALVDLLQY--GSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTD---SSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRD---TEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLRKS 621          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 1.020e-9
Identity = 73/277 (26.35%), Postives = 128/277 (46.21%), Query Frame = 2
Query:   26 QPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS-DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCE-AERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQL--LLLVQSDCTERAKRKAQMLLKLLR 844
            + R +A+  ++ L++ S  NR +I+   A  VL++++ S D  + E ++  +  L +++ N+      G+    V  + ++L   ++E R N+A+     L      D    I         +VD+L N    PR  +    ALF LC+    + +AV+AG    L+  L+D  +    + AL  + +L        A    A T+P L+  +     R  E AA  L++LC        + ++ G L  +  L+ +  + TER KRKA  LL+LLR
Sbjct:  346 EDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYENNKELIMFAGA----VTSIVQVLRAGTMEARENAAA----TLFSLSLADENKIIIGGSGAIPALVDLLEN--GTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAI-VKANTLPALIGILQTDQTRNRENAAAILLSLCKR---DTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.710e-9
Identity = 69/275 (25.09%), Postives = 133/275 (48.36%), Query Frame = 2
Query:   44 LRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSV---EALAVLV-MFQLNESECESIGSDPN-RVVYLSRMLFHSSIEVRINSASLIENVLS--GTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVK-QTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEG-SQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLL 841
            + ++K L  +S+KNR  ++ +    VL D     +G  +L+    E L++L  MF +       + S  + R V  + +L  +   VR N+A +++ +LS   TR      +    + + E +V ++R+  S        + A++ + L K +   + ++ G  ++ ++ + D +    E+ALA ++ +C    G      +AL +PLLVK I K+S+ AT  +   ++ L       +  +AV  G   ++LL++Q    E  K KA  LLK++
Sbjct:  144 IEKIKKLGDESEKNRKCVNENSVGWVLCDCFDKFSGDEKLTFMLNEILSLLTWMFPIGLEGISKLASATSFRCV--AGLLKSTDDSVRQNAAFIMKEILSLDETRVHSFAVE----NGVAEALVKLIRDSVSSSSTKSSLI-AIYQMVLQKPEIASEFLEIGLVSITVEMIVDAENSVCEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMILKLWKTGNTVAVEDAVRLGAFQKVLLVLQVGYGEETKEKATELLKMM 411          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.252e-9
Identity = 78/282 (27.66%), Postives = 126/282 (44.68%), Query Frame = 2
Query:    8 AVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS-DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNL-----NSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLK 835
            A  +P   R SA   ++ LA+ +  NR  I+   A  +L+ ++ + D+   E SV AL  L + + N+    S G+ P  V    ++L   S+E R N+A+ +               + + +++  G +  +  L         R  +    ALF LC+ +  + KA++AG    L   L +      + ALA + +L   P G  A    +  VP LV+ I   S R  E AA  L+ LCS       EA   G++  L+ L   + T+R KRKA  LL+
Sbjct:  362 AYGNPEDQR-SAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIV----QVLKKGSMEARENAAATL-----------FSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEG-KAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLA-GNGTDRGKRKAAQLLE 625          
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB20_ARATH (U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 7.453e-8
Identity = 32/108 (29.63%), Postives = 56/108 (51.85%), Query Frame = 2
Query:  521 IDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQ-REAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLL 841
            ++ L D +    E+AL  + ++C    G      + L +P+LVK ILKIS++        +  +C   +GS+  EA+  G   +L++++Q  C E  K K   LLK++
Sbjct:  299 VEMLVDSENSVCEKALTVLNVICETKEGREKVRRNKLVIPILVKKILKISEKKD--LVSVMWKVCKSGDGSEVEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMM 404          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2S8A2_GOSRA0.000e+098.35Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061E0Y0_THECC0.000e+084.92Plant U-box 26 OS=Theobroma cacao GN=TCM_007082 PE... [more]
A0A0D2PYI4_GOSRA1.771e-16883.93Uncharacterized protein OS=Gossypium raimondii GN=... [more]
B9HS21_POPTR1.451e-15975.58U-box domain-containing family protein OS=Populus ... [more]
A9PAR6_POPTR1.727e-15975.58Putative uncharacterized protein OS=Populus tricho... [more]
A0A067KJ43_JATCU4.015e-15975.16Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9N4Z3_POPTR5.120e-15875.58Uncharacterized protein OS=Populus trichocarpa GN=... [more]
W9S676_9ROSA4.120e-15774.18U-box domain-containing protein 26 OS=Morus notabi... [more]
M5VJA2_PRUPE1.949e-14673.18Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A0A0L6F8_CUCSA3.859e-14371.38Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PUB10_ARATH2.433e-1029.27U-box domain-containing protein 10 OS=Arabidopsis ... [more]
PUB11_ARATH1.020e-926.35U-box domain-containing protein 11 OS=Arabidopsis ... [more]
PUB21_ARATH1.710e-925.09U-box domain-containing protein 21 OS=Arabidopsis ... [more]
PUB13_ARATH3.252e-927.66U-box domain-containing protein 13 OS=Arabidopsis ... [more]
PUB20_ARATH7.453e-829.63U-box domain-containing protein 20 OS=Arabidopsis ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 4..266
e-value: 4.7E-18
score: 64.2
NoneNo IPR availablePANTHERPTHR22849WDSAM1 PROTEINcoord: 1..289
NoneNo IPR availablePANTHERPTHR22849:SF52E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATEDcoord: 1..289
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 4..267

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0004217 ID=g.arboreum_cottongen_reftransV1_0004217; Name=g.arboreum_cottongen_reftransV1_0004217; organism=Gossypium arboreum; type=contig; length=938bp
AGCTTCGGCGGTTTCCAGTCCGTTTCAGCCTCGTCTCTCGGCTCTGCGTC
GACTCAAGGGACTGGCAAGAGACTCGGATAAGAACCGGTCCGTTATTTCT
TCACATGACGCACGTGAGGTACTGATAGATATCGTGTTTTCGGATACAGG
CTCGTCGGAGTTGAGCGTGGAGGCGCTTGCGGTTTTAGTGATGTTTCAAC
TCAATGAATCCGAGTGCGAGTCGATTGGTTCGGATCCCAACAGAGTGGTC
TACCTGTCGCGTATGTTGTTCCATTCCTCAATCGAAGTACGAATTAACTC
GGCTTCACTCATCGAAAACGTTCTCTCCGGCACGAGATCGCCGGATCTTC
GAGCTCAGATATGCAATGCGGATGAGATCTTCGAAGGCGTCGTGGACATA
TTAAGGAACCTCAACTCTTATCCTCGCGCGCTGAGAATCGGCGTTCGGGC
TCTCTTCGCCTTGTGCTTAGTGAAGCAAACGAGGCACAAAGCCGTCCAAG
CCGGAGCGCCGGCGATGTTGATCGACCGGTTGGCCGATTTGGACAAGTGC
GAGGCCGAACGAGCTCTGGCGACGATAGAATTGTTGTGCCGGATCCCCTC
CGGGTGTTTGGCGTTCGCGGCGCACGCGCTGACTGTCCCGCTGCTGGTAA
AAACGATACTGAAGATCTCGGACAGGGCTACGGAGTACGCGGCGGGTGCA
CTGATGGCGCTGTGCTCGGAGTCGGAAGGGAGCCAGAGGGAGGCGGTGAG
CGCGGGGGTTCTGACACAGCTGCTATTGCTGGTTCAAAGTGATTGTACGG
AGAGGGCGAAGAGGAAGGCCCAAATGCTTCTTAAGTTGCTTCGGGATTCG
TGGCCCGAAGATTCCATCGGCAATTCGGATGATTTTGCTTGCAGTGAAAT
CGTACCCTTTTGACCATCCCTCTCGCCTCACACCGAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding