g.arboreum_cottongen_reftransV1_0004217, g.arboreum_cottongen_reftransV1_0004217 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A0D2S8A2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G045000 PE=4 SV=1) HSP 1 Score: 592.808 bits (1527), Expect = 0.000e+0 Identity = 298/303 (98.35%), Postives = 300/303 (99.01%), Query Frame = 2 Query: 2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSS+LSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQI NADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPA LIDRLADLDKC+AERALATIELLCRIPSGC AFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF Sbjct: 114 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSDLSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQISNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPATLIDRLADLDKCDAERALATIELLCRIPSGCSAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 416
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A061E0Y0_THECC (Plant U-box 26 OS=Theobroma cacao GN=TCM_007082 PE=4 SV=1) HSP 1 Score: 520.39 bits (1339), Expect = 0.000e+0 Identity = 259/305 (84.92%), Postives = 285/305 (93.44%), Query Frame = 2 Query: 2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGS--SELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910 AS+VS+PFQ RLSALRRLKGLARDSDKNRSVISSH+ARE+LI+IVFSDTGS SEL+ EALA+LVMFQL ESEC SI SD N+V+YLS++LFHSSIEVR+NSASLIE V++GTRS DLRAQI N DEIFEGV D+L+NLNSYPRAL+I +RALFALCLVKQTRHKAVQAGA LIDRLADLDKC+AERALATIELLCRIPSGC AFAAHALTVPLLVKTILKISDRATE++AGAL+ALCSESE SQR+AVSAG+LTQLLLLVQSDCT+RAKRKAQ LLKLLRDSWPEDSIGNSDDFACSE+VPF Sbjct: 112 ASSVSNPFQSRLSALRRLKGLARDSDKNRSVISSHNAREILINIVFSDTGSGSSELNQEALALLVMFQLTESECASIASDSNKVIYLSKLLFHSSIEVRVNSASLIEIVVAGTRSSDLRAQISNVDEIFEGVTDLLKNLNSYPRALKISIRALFALCLVKQTRHKAVQAGAAETLIDRLADLDKCDAERALATIELLCRIPSGCSAFAAHALTVPLLVKTILKISDRATEHSAGALVALCSESEQSQRDAVSAGILTQLLLLVQSDCTDRAKRKAQTLLKLLRDSWPEDSIGNSDDFACSEVVPF 416
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A0D2PYI4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G237200 PE=4 SV=1) HSP 1 Score: 486.878 bits (1252), Expect = 1.771e-168 Identity = 256/305 (83.93%), Postives = 278/305 (91.15%), Query Frame = 2 Query: 2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSD--TGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910 AS VS+PF R SAL RLKGLAR+S+KNR+VI SH+ARE+L+ I+FSD +GSSELS EALAVLVMFQL ESEC IGSD NRVVYLS +LFHSSIEVR+NSASLIE VL+G RS DLRA+ICN DEIF GV DIL+NL+SYPRALRIGVRALFALCL+KQTRHKAVQAGA LIDRL DLDKC+AERALATIELLCRIPSGC AFA+HALTVPLLVKTIL+ISDRATEYAAGALMALCSESE SQ++AVSAGVLTQLLLLVQSDCT+RAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF Sbjct: 112 ASTVSNPFSVRHSALVRLKGLARESEKNRNVICSHEAREILMRILFSDVSSGSSELSQEALAVLVMFQLTESECTGIGSDSNRVVYLSELLFHSSIEVRVNSASLIETVLAGMRSSDLRAEICNVDEIFAGVTDILKNLSSYPRALRIGVRALFALCLLKQTRHKAVQAGAAETLIDRLTDLDKCDAERALATIELLCRIPSGCSAFASHALTVPLLVKTILRISDRATEYAAGALMALCSESEQSQKDAVSAGVLTQLLLLVQSDCTDRAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 416
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: B9HS21_POPTR (U-box domain-containing family protein OS=Populus trichocarpa GN=POPTR_0009s10310g PE=4 SV=1) HSP 1 Score: 464.151 bits (1193), Expect = 1.451e-159 Identity = 229/303 (75.58%), Postives = 266/303 (87.79%), Query Frame = 2 Query: 2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910 A++ S+P RLSALRRL+GLARDSDKNRSVISSH+ REVL+++VFS + SS+LS E+LA+LV+F L E +C I S+P R+ YL+ +LFHSSIEVR+NSA+LIENV++GTRS DLR QI N + IFEGV++IL+N S PRAL+IG++ALFALCLVKQTRHKAV AGA LIDRLAD DKC+AERALATIELLCRI GC AFAAHALTVPLLVKTILKISDRATEYAAGAL+ALCS SE SQ+EAV AG+LTQLLLLVQSDCT+RAKRKAQMLLKLLRD+WPEDS+GNSDDF CSE+VPF Sbjct: 111 AASASNPTHSRLSALRRLRGLARDSDKNRSVISSHNVREVLVNLVFSTSQSSDLSHESLAILVLFPLTEFDCVGISSEPERISYLANLLFHSSIEVRVNSAALIENVIAGTRSSDLRLQISNTEIIFEGVIEILKNPLSSPRALKIGIKALFALCLVKQTRHKAVTAGAAETLIDRLADFDKCDAERALATIELLCRIQVGCAAFAAHALTVPLLVKTILKISDRATEYAAGALLALCSASELSQKEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDAWPEDSVGNSDDFLCSEVVPF 413
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A9PAR6_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 463.766 bits (1192), Expect = 1.727e-159 Identity = 229/303 (75.58%), Postives = 266/303 (87.79%), Query Frame = 2 Query: 2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910 A++ S+P RLSALRRL+GLARDSDKNRSVISSH+ REVL+++VFS + SS+LS E+LA+LV+F L E +C I S+P R+ YL+ +LFHSSIEVR+NSA+LIENV++GTRS DLR QI N + IFEGV++IL+N S PRAL+IG++ALFALCLVKQTRHKAV AGA LIDRLAD DKC+AERALATIELLCRI GC AFAAHALTVPLLVKTILKISDRATEYAAGAL+ALCS SE SQ+EAV AG+LTQLLLLVQSDCT+RAKRKAQMLLKLLRD+WPEDS+GNSDDF CSE+VPF Sbjct: 111 AASASNPTHSRLSALRRLRGLARDSDKNRSVISSHNVREVLVNLVFSTSQSSDLSHESLAILVLFPLTEFDCVGISSEPERISYLANLLFHSSIEVRVNSAALIENVIAGTRSSDLRLQISNTEIIFEGVIEILKNPLSSPRALKIGIKALFALCLVKQTRHKAVTAGAAETLIDRLADFDKCDAERALATIELLCRIQVGCAAFAAHALTVPLLVKTILKISDRATEYAAGALLALCSASELSQKEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDAWPEDSVGNSDDFLCSEVVPF 413
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A067KJ43_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14786 PE=4 SV=1) HSP 1 Score: 462.996 bits (1190), Expect = 4.015e-159 Identity = 230/306 (75.16%), Postives = 269/306 (87.91%), Query Frame = 2 Query: 2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVF---SDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910 AS+ S+ +Q RLSALRRL+GLARDSDKNRSVISSH+AREV I++VF +D+ SS+L+ EALA+L+MF L+ES+C I SD R+ YL +LFH SIEVR+NSA+LIE V++GT+S DLRAQI + DEIFEGV+++L+N SYPRAL+IG++ALFALCLVKQTRHKAV AGA +LIDRLAD DKC+AERALATIELLCR+P+GC AFA HALTVPLLVK ILKISDRATEYAAGAL+ALC+ SE SQREAVSAG+LTQLLLLVQSDCT+RAKRKAQMLLKLLRDSWPEDS NSDDF CSE+VPF Sbjct: 111 ASSESNLYQSRLSALRRLRGLARDSDKNRSVISSHNAREVFINLVFANCTDSNSSDLNHEALALLIMFPLSESDCVCIASDSGRINYLVNLLFHISIEVRVNSAALIEIVVAGTKSSDLRAQISSVDEIFEGVIEMLKNPISYPRALKIGIKALFALCLVKQTRHKAVSAGAADILIDRLADFDKCDAERALATIELLCRVPTGCTAFAGHALTVPLLVKKILKISDRATEYAAGALLALCTSSEQSQREAVSAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDSWPEDSSANSDDFICSEVVPF 416
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: B9N4Z3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s14720g PE=4 SV=1) HSP 1 Score: 460.299 bits (1183), Expect = 5.120e-158 Identity = 229/303 (75.58%), Postives = 263/303 (86.80%), Query Frame = 2 Query: 2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEIVPF 910 A++ S+P RLSALRRL+GLARDSDKNRS+ISSH+ RE+L+++VFS + S ELS E+LA+LVMF L E +C +I SDP R+ L+ +LFHSSIEVR+NSA+LIENV++GTRS DLR QI N + IFEGV+DIL+N S PRAL+IG++ LFALCLVKQTRHKAV AGA LIDRLADLDKC+AERALATIELLCRI GC AF AHALTVPLLVKTILKISDRATEYAAGAL+ALCS SE SQ+EAV AG+LTQLLLLVQSDCT+RAKRKAQMLLKLLRDSWPEDS GNSDDF CSE+VPF Sbjct: 111 AASESNPTHSRLSALRRLRGLARDSDKNRSLISSHNVREILVNLVFSSSQSLELSHESLAILVMFPLTEFDCVAIASDPERISCLANLLFHSSIEVRVNSAALIENVIAGTRSSDLRLQISNMEIIFEGVIDILKNPLSSPRALKIGIKGLFALCLVKQTRHKAVSAGAAETLIDRLADLDKCDAERALATIELLCRIQVGCAAFVAHALTVPLLVKTILKISDRATEYAAGALLALCSASEQSQKEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDSWPEDSAGNSDDFVCSEVVPF 413
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: W9S676_9ROSA (U-box domain-containing protein 26 OS=Morus notabilis GN=L484_027509 PE=4 SV=1) HSP 1 Score: 457.988 bits (1177), Expect = 4.120e-157 Identity = 227/306 (74.18%), Postives = 273/306 (89.22%), Query Frame = 2 Query: 2 ASAVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS--DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSE-IVPF 910 AS+ S+P RLSALRRL+GLARDSDKNRSVISS ++REVL+DIVF+ + SSELS EALAV VMF +E EC ++ S+P+RV YL+R+LFHSSI+VR+NSA++IE V++GTR+P+LR+QI N DEIFEGV++ILR+ +YPRAL++G++ALFA+CLVKQTRHKA+ AGA +LIDRLAD +KC+AERALAT+ELLCRIP+GC A AAHALTVPLLVK ILKISDRATEYAAGAL++LCS SE SQREAV+AG+LTQLLLLVQSDCT+RAKRKAQ+LLKLLRDSWPEDSI NSDDFACSE +VPF Sbjct: 111 ASSESTPAPTRLSALRRLRGLARDSDKNRSVISSLNSREVLLDIVFAGASSDSSELSREALAVAVMFPFSEIECAAVASEPDRVAYLTRLLFHSSIDVRVNSAAMIEIVVAGTRTPELRSQISNVDEIFEGVIEILRSPIAYPRALKVGIKALFAMCLVKQTRHKAIAAGAAEILIDRLADFEKCDAERALATVELLCRIPAGCSALAAHALTVPLLVKIILKISDRATEYAAGALVSLCSASEQSQREAVAAGILTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPEDSIRNSDDFACSEVVVPF 416
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: M5VJA2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006352mg PE=4 SV=1) HSP 1 Score: 430.639 bits (1106), Expect = 1.949e-146 Identity = 221/302 (73.18%), Postives = 268/302 (88.74%), Query Frame = 2 Query: 14 SSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGS--SELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSE-IVPF 910 S+P+ RLSALRRL+GLARD DKNRS ISS ++RE+L+ +VF+DTGS SEL+ EALA+LV+F L ES+C ++ SDP+RV YL++++ HSS+EVR+NSA+LIENVL+G+R+ +LRA+I N DEI +GVV ILRN +YPRAL+IG++ALFALCLVKQTR+KAV AGAP LI+ LAD +KC++ERALATIELLCR+P GC AFAAHALTVPLLVKTILKISDRATEYAAGAL++LCS SE SQ +AV+AGVLTQLLLLVQSDCT+RAKRKAQ+LLKLLRDSWPEDS+GNSDDF CSE +VPF Sbjct: 115 SNPYPTRLSALRRLRGLARDLDKNRSTISSQNSREILVQLVFADTGSESSELTHEALALLVLFPLPESDCAAVASDPDRVAYLAQLVQHSSMEVRVNSAALIENVLAGSRTAELRAEISNVDEIHQGVVSILRNPIAYPRALKIGIKALFALCLVKQTRNKAVSAGAPETLINTLADFEKCDSERALATIELLCRVPDGCTAFAAHALTVPLLVKTILKISDRATEYAAGALLSLCSASEKSQNDAVAAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPEDSVGNSDDFVCSELVVPF 416
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Match: A0A0A0L6F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G203270 PE=4 SV=1) HSP 1 Score: 422.935 bits (1086), Expect = 3.859e-143 Identity = 212/297 (71.38%), Postives = 255/297 (85.86%), Query Frame = 2 Query: 41 ALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS------DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEDSIGNSDDFACSEI-VPF 910 ALRRLKGLARDSDKNRS+ISS +ARE+L+D+VFS D+ S +LS E+LA+LVM L ESEC + SDP R+ YLS +LF SSIE RIN+A+LIE V++GTR+ +LR QIC DE+FEGVV+ILR+ +YPRAL++GV+ALFALCLVKQTRHKAV AGA ++IDR DL+K +AERALATIEL+CRIP+GC AFAAHALTVPLLVK ILKISDRATE A GAL++LCS SE ++REAV+AG+LTQLLLLVQSDCTER KRK+Q+LLKLLRDSWP++S+GNSDD+ACSEI VPF Sbjct: 128 ALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSGSDSFSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEDRINAAALIETVIAGTRASELRTQICGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDLEKYDAERALATIELICRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYACSEIVVPF 424
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 2.433e-10 Identity = 84/287 (29.27%), Postives = 133/287 (46.34%), Query Frame = 2 Query: 14 SSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSVEALAVLVMFQLNESECESI---GSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAER-ALATIELLCRIPSGCLAFAA--HALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQ--SDCTERAKRKAQMLLKLLRDS 850 S + R +A+ ++ L++ S NR +I+ A VL+ ++ SD G +E A+ ++ + E E I G+ V + +L S+E R N+A+ L D I A +VD+L+ R + ALF LC+ + + +AV+AG L+ L D +ER A + +L + S +A A A +P L+ + K R E AA L+ LC + +S G L ++ L++ D TERAKRKA LL+LLR S Sbjct: 352 SQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSD-GDTETQENAVTCILNLSIYEHNKELIMLAGA----VTSIVLVLRAGSMEARENAAA----TLFSLSLADENKIIIGASGAIMALVDLLQY--GSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTD---SSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRD---TEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLRKS 621
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2) HSP 1 Score: 63.1586 bits (152), Expect = 1.020e-9 Identity = 73/277 (26.35%), Postives = 128/277 (46.21%), Query Frame = 2 Query: 26 QPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS-DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCE-AERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQL--LLLVQSDCTERAKRKAQMLLKLLR 844 + R +A+ ++ L++ S NR +I+ A VL++++ S D + E ++ + L +++ N+ G+ V + ++L ++E R N+A+ L D I +VD+L N PR + ALF LC+ + +AV+AG L+ L+D + + AL + +L A A T+P L+ + R E AA L++LC + ++ G L + L+ + + TER KRKA LL+LLR Sbjct: 346 EDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYENNKELIMFAGA----VTSIVQVLRAGTMEARENAAA----TLFSLSLADENKIIIGGSGAIPALVDLLEN--GTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAI-VKANTLPALIGILQTDQTRNRENAAAILLSLCKR---DTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.710e-9 Identity = 69/275 (25.09%), Postives = 133/275 (48.36%), Query Frame = 2 Query: 44 LRRLKGLARDSDKNRSVISSHDAREVLIDIVFSDTGSSELSV---EALAVLV-MFQLNESECESIGSDPN-RVVYLSRMLFHSSIEVRINSASLIENVLS--GTRSPDLRAQICNADEIFEGVVDILRNLNSYPRALRIGVRALFALCLVK-QTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEG-SQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLL 841 + ++K L +S+KNR ++ + VL D +G +L+ E L++L MF + + S + R V + +L + VR N+A +++ +LS TR + + + E +V ++R+ S + A++ + L K + + ++ G ++ ++ + D + E+ALA ++ +C G +AL +PLLVK I K+S+ AT + ++ L + +AV G ++LL++Q E K KA LLK++ Sbjct: 144 IEKIKKLGDESEKNRKCVNENSVGWVLCDCFDKFSGDEKLTFMLNEILSLLTWMFPIGLEGISKLASATSFRCV--AGLLKSTDDSVRQNAAFIMKEILSLDETRVHSFAVE----NGVAEALVKLIRDSVSSSSTKSSLI-AIYQMVLQKPEIASEFLEIGLVSITVEMIVDAENSVCEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMILKLWKTGNTVAVEDAVRLGAFQKVLLVLQVGYGEETKEKATELLKMM 411
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 3.252e-9 Identity = 78/282 (27.66%), Postives = 126/282 (44.68%), Query Frame = 2 Query: 8 AVSSPFQPRLSALRRLKGLARDSDKNRSVISSHDAREVLIDIVFS-DTGSSELSVEALAVLVMFQLNESECESIGSDPNRVVYLSRMLFHSSIEVRINSASLIENVLSGTRSPDLRAQICNADEIFEGVVDILRNL-----NSYPRALRIGVRALFALCLVKQTRHKAVQAGAPAMLIDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQREAVSAGVLTQLLLLVQSDCTERAKRKAQMLLK 835 A +P R SA ++ LA+ + NR I+ A +L+ ++ + D+ E SV AL L + + N+ S G+ P V ++L S+E R N+A+ + + + +++ G + + L R + ALF LC+ + + KA++AG L L + + ALA + +L P G A + VP LV+ I S R E AA L+ LCS EA G++ L+ L + T+R KRKA LL+ Sbjct: 362 AYGNPEDQR-SAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIV----QVLKKGSMEARENAAATL-----------FSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEG-KAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLA-GNGTDRGKRKAAQLLE 625
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Match: PUB20_ARATH (U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 7.453e-8 Identity = 32/108 (29.63%), Postives = 56/108 (51.85%), Query Frame = 2 Query: 521 IDRLADLDKCEAERALATIELLCRIPSGCLAFAAHALTVPLLVKTILKISDRATEYAAGALMALCSESEGSQ-REAVSAGVLTQLLLLVQSDCTERAKRKAQMLLKLL 841 ++ L D + E+AL + ++C G + L +P+LVK ILKIS++ + +C +GS+ EA+ G +L++++Q C E K K LLK++ Sbjct: 299 VEMLVDSENSVCEKALTVLNVICETKEGREKVRRNKLVIPILVKKILKISEKKD--LVSVMWKVCKSGDGSEVEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMM 404 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0004217 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 15
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0004217 ID=g.arboreum_cottongen_reftransV1_0004217; Name=g.arboreum_cottongen_reftransV1_0004217; organism=Gossypium arboreum; type=contig; length=938bpback to top |