g.arboreum_cottongen_reftransV1_0017515, g.arboreum_cottongen_reftransV1_0017515 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0017515
Unique Nameg.arboreum_cottongen_reftransV1_0017515
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr4chromosomeg.arboreum_cottongen_reftransV1_0017515:1..455 .
Chr4:15595324..15596688 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: W9S840_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015502 PE=4 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.613e-94
Identity = 137/150 (91.33%), Postives = 143/150 (95.33%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDV 452
            AGLEQTLPWIFYHKVIGVS FFLFVEGKAAS NVSKVLESIPGVKVIYRT+ELEEQQAKSRIWNETWLASFF+KPCNYELFVKQSLNMEM+I MAR+AGMDWI HLDTDELIHP G REYSLRQLLA VPGNVDMV+FPNYESSVERDD+
Sbjct:  125 AGLEQTLPWIFYHKVIGVSNFFLFVEGKAASANVSKVLESIPGVKVIYRTRELEEQQAKSRIWNETWLASFFFKPCNYELFVKQSLNMEMAIAMAREAGMDWIFHLDTDELIHPAGTREYSLRQLLADVPGNVDMVIFPNYESSVERDDI 274
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A0A061FL04_THECC (Elongation defective 1 protein / ELD1 protein isoform 2 OS=Theobroma cacao GN=TCM_042386 PE=4 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.932e-94
Identity = 135/151 (89.40%), Postives = 144/151 (95.36%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQ LPW+FYHKVIGV+TFFLFVEG AASPNVS+VLESIPGVKVIYRT+ELEEQQAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+IVMARDAGMDWI+HLDTDELIHP GA EYSLRQLL  VP NVDMV+FPNYESSVERDD+K
Sbjct:  137 AGLEQILPWMFYHKVIGVTTFFLFVEGHAASPNVSRVLESIPGVKVIYRTRELEEQQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWILHLDTDELIHPAGASEYSLRQLLLDVPRNVDMVIFPNYESSVERDDIK 287
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: Q2HRF3_MEDTR (Elongation defective 1 protein/ELD1 protein OS=Medicago truncatula GN=MTR_7g090740 PE=4 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 5.755e-94
Identity = 132/150 (88.00%), Postives = 146/150 (97.33%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDV 452
            AGLEQTLPWI+YHKV+GVS+F LFVEGKAASPNVS+VLE+IPGVKVIYRT+ELEEQQAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+IVMARD+GMDWIIHLDTDELIHP G +EYS+RQLL+ VPGNVDMV+FPNYESSVERDD+
Sbjct:  114 AGLEQTLPWIYYHKVMGVSSFLLFVEGKAASPNVSRVLETIPGVKVIYRTRELEEQQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDSGMDWIIHLDTDELIHPAGTQEYSMRQLLSDVPGNVDMVIFPNYESSVERDDI 263
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: V4S2C6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004681mg PE=4 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 6.311e-94
Identity = 136/151 (90.07%), Postives = 144/151 (95.36%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQT+PWIFYHKVIGVS FFLFVEGKAASP VSKV ESIPGVKVIYRT+ELEEQQAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+IVMARDAGM+WIIHLDTDELIHP GAREYSLRQLL+ VP NVDMVVFPNYES +ERDD+K
Sbjct:  144 AGLEQTIPWIFYHKVIGVSNFFLFVEGKAASPAVSKVFESIPGVKVIYRTRELEEQQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDAGMNWIIHLDTDELIHPAGAREYSLRQLLSDVPSNVDMVVFPNYESCIERDDIK 294
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: V7CVG1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G128300g PE=4 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.683e-93
Identity = 135/151 (89.40%), Postives = 144/151 (95.36%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGVS F LFVEGKAASPNV++VLESIPGVKVI+RT+ELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEM+IVMARD+ MDWIIHLDTDEL+HP G  EYSLRQLLA VPGNVDMV+FPNYESSVERDD+K
Sbjct:  114 AGLEQTLPWIFYHKVIGVSNFLLFVEGKAASPNVTRVLESIPGVKVIFRTRELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMAIVMARDSRMDWIIHLDTDELMHPAGTPEYSLRQLLADVPGNVDMVIFPNYESSVERDDIK 264
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy Swiss-Prot
Match: ELD1_ARATH (Glycosyltransferase-like KOBITO 1 OS=Arabidopsis thaliana GN=ELD1 PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 3.760e-94
Identity = 132/151 (87.42%), Postives = 146/151 (96.69%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGL+Q LPW+FYHKV+GVSTFFLFVEGKAA+P++SKVLESIPGVKVIYRTKELEE+QAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+IVMARDAGMDWI+HLDTDELI+P GAREYSLR+LL  VP NVDMV+FPNYESSVERDD+K
Sbjct:  138 AGLDQILPWMFYHKVLGVSTFFLFVEGKAATPSISKVLESIPGVKVIYRTKELEEKQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWILHLDTDELIYPAGAREYSLRRLLLDVPPNVDMVIFPNYESSVERDDIK 288
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy Swiss-Prot
Match: GLYT7_ARATH (Glycosyltransferase-like At3g57200 OS=Arabidopsis thaliana GN=At3g57200 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.272e-90
Identity = 126/151 (83.44%), Postives = 143/151 (94.70%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWI++HKVIGVSTF+LFVEGKAASPNVS+VLE+IPGVKVIYRTKELEE+QAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+I MA+DAGM+WIIHLDTDELIHP G  EYSLR+LL  +  +VD+V+FPNYESSVERDD++
Sbjct:  124 AGLEQTLPWIYFHKVIGVSTFYLFVEGKAASPNVSRVLETIPGVKVIYRTKELEEKQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAITMAQDAGMEWIIHLDTDELIHPSGTHEYSLRKLLGNISADVDVVIFPNYESSVERDDIR 274
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy Swiss-Prot
Match: GLYT8_ARATH (Glycosyltransferase-like At2g41451 OS=Arabidopsis thaliana GN=At2g41451 PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 9.295e-90
Identity = 125/151 (82.78%), Postives = 137/151 (90.73%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGV TF+LFVEG AASPNVS+VLE+IPGV VIYRT+ELEE+QAKSRIWNETWL  FFYKPCNYELFVKQ+LNMEM+I MARDAGMDWI+HLDTDEL+HP G REYSLR LL  VP +VD V+F NYESSVERDD+K
Sbjct:  105 AGLEQTLPWIFYHKVIGVETFYLFVEGTAASPNVSRVLETIPGVNVIYRTRELEEEQAKSRIWNETWLEKFFYKPCNYELFVKQNLNMEMAITMARDAGMDWILHLDTDELVHPSGTREYSLRNLLRDVPADVDEVIFTNYESSVERDDIK 255
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
W9S840_9ROSA2.613e-9491.33Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A061FL04_THECC4.932e-9489.40Elongation defective 1 protein / ELD1 protein isof... [more]
Q2HRF3_MEDTR5.755e-9488.00Elongation defective 1 protein/ELD1 protein OS=Med... [more]
V4S2C6_9ROSI6.311e-9490.07Uncharacterized protein OS=Citrus clementina GN=CI... [more]
V7CVG1_PHAVU1.683e-9389.40Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]

Pages

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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ELD1_ARATH3.760e-9487.42Glycosyltransferase-like KOBITO 1 OS=Arabidopsis t... [more]
GLYT7_ARATH3.272e-9083.44Glycosyltransferase-like At3g57200 OS=Arabidopsis ... [more]
GLYT8_ARATH9.295e-9082.78Glycosyltransferase-like At2g41451 OS=Arabidopsis ... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10774:SF61ELONGATION DEFECTIVE 1coord: 3..84
NoneNo IPR availablePANTHERPTHR10774EXTENDED SYNAPTOTAGMIN-RELATEDcoord: 3..84

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0017515 ID=g.arboreum_cottongen_reftransV1_0017515; Name=g.arboreum_cottongen_reftransV1_0017515; organism=Gossypium arboreum; type=contig; length=455bp
CTGCAGGATTAGAACAGACACTACCATGGATCTTTTATCACAAGGTTATT
GGAGTTTCAACCTTTTTCCTTTTTGTTGAGGGGAAGGCTGCCTCTCCTAA
TGTATCTAAAGTCCTAGAATCGATTCCAGGGGTGAAAGTGATATACAGAA
CAAAAGAATTAGAGGAACAACAAGCTAAAAGTCGGATTTGGAATGAGACC
TGGTTGGCAAGTTTCTTCTACAAACCATGTAACTACGAGTTGTTTGTGAA
GCAATCCCTTAATATGGAAATGTCTATTGTCATGGCAAGGGATGCTGGCA
TGGATTGGATTATTCATCTTGACACCGATGAGCTTATACATCCCGTGGGT
GCTCGCGAGTACTCTTTGAGACAATTATTGGCAGGTGTACCTGGAAATGT
TGATATGGTTGTCTTCCCAAATTATGAAAGCAGTGTTGAGCGGGATGATG
TCAAG
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