g.arboreum_cottongen_reftransV1_0017515, g.arboreum_cottongen_reftransV1_0017515 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0017515
Unique Nameg.arboreum_cottongen_reftransV1_0017515
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length455
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr4chromosomeg.arboreum_cottongen_reftransV1_0017515:1..455 .
Chr4:15595324..15596688 +		n/a
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A0A0B2Q4J1_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_024058 PE=4 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 7.938e-96
Identity = 133/151 (88.08%), Postives = 147/151 (97.35%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGVS+F LFVEGKAASPNV++VLE+IPGVK++YRT+ELEEQQAKSRIWNETWLA+FFYKPCNYELFVKQSLNMEM+IVMARD+GMDWIIHLDTDEL+HP G +EYSLRQLLA VPGNVDMV+FPNYESSVERDD+K
Sbjct:   44 AGLEQTLPWIFYHKVIGVSSFLLFVEGKAASPNVTRVLETIPGVKIVYRTRELEEQQAKSRIWNETWLATFFYKPCNYELFVKQSLNMEMAIVMARDSGMDWIIHLDTDELMHPAGTQEYSLRQLLADVPGNVDMVIFPNYESSVERDDIK 194
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: I1N8W3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 295.819 bits (756), Expect = 1.408e-95
Identity = 133/151 (88.08%), Postives = 147/151 (97.35%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGVS+F LFVEGKAASPNV++VLE+IPGVK++YRT+ELEEQQAKSRIWNETWLA+FFYKPCNYELFVKQSLNMEM+IVMARD+GMDWIIHLDTDEL+HP G +EYSLRQLLA VPGNVDMV+FPNYESSVERDD+K
Sbjct:   74 AGLEQTLPWIFYHKVIGVSSFLLFVEGKAASPNVTRVLETIPGVKIVYRTRELEEQQAKSRIWNETWLATFFYKPCNYELFVKQSLNMEMAIVMARDSGMDWIIHLDTDELMHPAGTQEYSLRQLLADVPGNVDMVIFPNYESSVERDDIK 224
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A0A067JTV9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22449 PE=4 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 1.801e-95
Identity = 137/151 (90.73%), Postives = 147/151 (97.35%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASP VSKVLE+IPGVKVIYRT+ELEEQQA+SRIWNETWLA+FFYKPCNYELFVKQSLNMEM+IVMAR+AGMDWIIHLDTDELIHP GAREYSLRQLL+ VP N+DMV+FPNYESSVERDD+K
Sbjct:  123 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPKVSKVLETIPGVKVIYRTRELEEQQARSRIWNETWLANFFYKPCNYELFVKQSLNMEMAIVMAREAGMDWIIHLDTDELIHPAGAREYSLRQLLSEVPRNIDMVIFPNYESSVERDDIK 273
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A0A0A0LFZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G823600 PE=4 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.394e-95
Identity = 138/151 (91.39%), Postives = 144/151 (95.36%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGVS FFLFVEGKAASPNVSKVLE+IPGVKVIYRTKELEEQQ KSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+IVMA+ AGMDWIIHLDTDEL+HP G REYSLRQLLA VP NVDMV+FPNYESSVERDDVK
Sbjct:  128 AGLEQTLPWIFYHKVIGVSNFFLFVEGKAASPNVSKVLETIPGVKVIYRTKELEEQQTKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMAKSAGMDWIIHLDTDELMHPAGTREYSLRQLLADVPSNVDMVIFPNYESSVERDDVK 278
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: D7SQ21_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g01720 PE=4 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 5.572e-95
Identity = 136/151 (90.07%), Postives = 146/151 (96.69%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQ LPW+FYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVI+RTKELEEQQAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+IVMAR+AGMDWI+HLDTDEL+HP GA EYSLRQLL  VPGNVDMV+FPNYESS+ERDD+K
Sbjct:  117 AGLEQILPWMFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIFRTKELEEQQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARNAGMDWILHLDTDELMHPAGATEYSLRQLLHDVPGNVDMVIFPNYESSIERDDIK 267
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A5B3W3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013037 PE=4 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.221e-94
Identity = 136/151 (90.07%), Postives = 146/151 (96.69%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQ LPW+FYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVI+RTKELEEQQAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+IVMAR+AGMDWI+HLDTDEL+HP GA EYSLRQLL  VPGNVDMV+FPNYESS+ERDD+K
Sbjct:  117 AGLEQILPWMFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIFRTKELEEQQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARNAGMDWILHLDTDELMHPAGATEYSLRQLLHDVPGNVDMVIFPNYESSIERDDIK 267
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A0A072UCM2_MEDTR (Elongation defective 1 protein/ELD1 protein OS=Medicago truncatula GN=MTR_7g090740 PE=4 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 1.298e-94
Identity = 132/150 (88.00%), Postives = 146/150 (97.33%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDV 452
            AGLEQTLPWI+YHKV+GVS+F LFVEGKAASPNVS+VLE+IPGVKVIYRT+ELEEQQAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+IVMARD+GMDWIIHLDTDELIHP G +EYS+RQLL+ VPGNVDMV+FPNYESSVERDD+
Sbjct:  114 AGLEQTLPWIYYHKVMGVSSFLLFVEGKAASPNVSRVLETIPGVKVIYRTRELEEQQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDSGMDWIIHLDTDELIHPAGTQEYSMRQLLSDVPGNVDMVIFPNYESSVERDDI 263
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A0A061FSR5_THECC (Elongation defective 1 protein / ELD1 protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_042386 PE=4 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.852e-94
Identity = 135/151 (89.40%), Postives = 144/151 (95.36%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQ LPW+FYHKVIGV+TFFLFVEG AASPNVS+VLESIPGVKVIYRT+ELEEQQAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+IVMARDAGMDWI+HLDTDELIHP GA EYSLRQLL  VP NVDMV+FPNYESSVERDD+K
Sbjct:  132 AGLEQILPWMFYHKVIGVTTFFLFVEGHAASPNVSRVLESIPGVKVIYRTRELEEQQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWILHLDTDELIHPAGASEYSLRQLLLDVPRNVDMVIFPNYESSVERDDIK 282
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: G7J1N7_MEDTR (Elongation defective 1 protein/ELD1 protein OS=Medicago truncatula GN=MTR_3g023150 PE=4 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 2.422e-94
Identity = 135/151 (89.40%), Postives = 144/151 (95.36%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQ LPW+FYHKVIGV+ FFLFVEGKAA+P VSKVLESIPGVKVIYRT +LEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEM+IVMARD+GMDWI+HLDTDELIHP GAREYSLRQLL  VPGNVDMV+FPNYESSVERDD+K
Sbjct:  125 AGLEQILPWMFYHKVIGVTNFFLFVEGKAATPEVSKVLESIPGVKVIYRTSQLEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMAIVMARDSGMDWILHLDTDELIHPAGAREYSLRQLLLDVPGNVDMVIFPNYESSVERDDIK 275
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: V4TQK7_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100311592mg PE=4 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.578e-94
Identity = 134/151 (88.74%), Postives = 143/151 (94.70%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            A L+Q LPW+FYHKVIGV+TFFLFVEGKAASP VSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+IVMARD GMDWI+HLDTDELIHP G REYSLRQLL  VPGNVDMV+FPNYESS+ERDD+K
Sbjct:  146 ASLDQILPWMFYHKVIGVTTFFLFVEGKAASPEVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDEGMDWILHLDTDELIHPAGGREYSLRQLLLDVPGNVDMVIFPNYESSIERDDIK 296
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy Swiss-Prot
Match: ELD1_ARATH (Glycosyltransferase-like KOBITO 1 OS=Arabidopsis thaliana GN=ELD1 PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 3.760e-94
Identity = 132/151 (87.42%), Postives = 146/151 (96.69%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGL+Q LPW+FYHKV+GVSTFFLFVEGKAA+P++SKVLESIPGVKVIYRTKELEE+QAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+IVMARDAGMDWI+HLDTDELI+P GAREYSLR+LL  VP NVDMV+FPNYESSVERDD+K
Sbjct:  138 AGLDQILPWMFYHKVLGVSTFFLFVEGKAATPSISKVLESIPGVKVIYRTKELEEKQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWILHLDTDELIYPAGAREYSLRRLLLDVPPNVDMVIFPNYESSVERDDIK 288
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy Swiss-Prot
Match: GLYT7_ARATH (Glycosyltransferase-like At3g57200 OS=Arabidopsis thaliana GN=At3g57200 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.272e-90
Identity = 126/151 (83.44%), Postives = 143/151 (94.70%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWI++HKVIGVSTF+LFVEGKAASPNVS+VLE+IPGVKVIYRTKELEE+QAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+I MA+DAGM+WIIHLDTDELIHP G  EYSLR+LL  +  +VD+V+FPNYESSVERDD++
Sbjct:  124 AGLEQTLPWIYFHKVIGVSTFYLFVEGKAASPNVSRVLETIPGVKVIYRTKELEEKQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAITMAQDAGMEWIIHLDTDELIHPSGTHEYSLRKLLGNISADVDVVIFPNYESSVERDDIR 274
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy Swiss-Prot
Match: GLYT8_ARATH (Glycosyltransferase-like At2g41451 OS=Arabidopsis thaliana GN=At2g41451 PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 9.295e-90
Identity = 125/151 (82.78%), Postives = 137/151 (90.73%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGV TF+LFVEG AASPNVS+VLE+IPGV VIYRT+ELEE+QAKSRIWNETWL  FFYKPCNYELFVKQ+LNMEM+I MARDAGMDWI+HLDTDEL+HP G REYSLR LL  VP +VD V+F NYESSVERDD+K
Sbjct:  105 AGLEQTLPWIFYHKVIGVETFYLFVEGTAASPNVSRVLETIPGVNVIYRTRELEEEQAKSRIWNETWLEKFFYKPCNYELFVKQNLNMEMAITMARDAGMDWILHLDTDELVHPSGTREYSLRNLLRDVPADVDEVIFTNYESSVERDDIK 255
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2Q4J1_GLYSO7.938e-9688.08Uncharacterized protein (Fragment) OS=Glycine soja... [more]
I1N8W3_SOYBN1.408e-9588.08Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
A0A067JTV9_JATCU1.801e-9590.73Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A0A0LFZ1_CUCSA2.394e-9591.39Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
D7SQ21_VITVI5.572e-9590.07Putative uncharacterized protein OS=Vitis vinifera... [more]
A5B3W3_VITVI1.221e-9490.07Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A072UCM2_MEDTR1.298e-9488.00Elongation defective 1 protein/ELD1 protein OS=Med... [more]
A0A061FSR5_THECC1.852e-9489.40Elongation defective 1 protein / ELD1 protein isof... [more]
G7J1N7_MEDTR2.422e-9489.40Elongation defective 1 protein/ELD1 protein OS=Med... [more]
V4TQK7_9ROSI2.578e-9488.74Uncharacterized protein (Fragment) OS=Citrus cleme... [more]

Pages

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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ELD1_ARATH3.760e-9487.42Glycosyltransferase-like KOBITO 1 OS=Arabidopsis t... [more]
GLYT7_ARATH3.272e-9083.44Glycosyltransferase-like At3g57200 OS=Arabidopsis ... [more]
GLYT8_ARATH9.295e-9082.78Glycosyltransferase-like At2g41451 OS=Arabidopsis ... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10774:SF61ELONGATION DEFECTIVE 1coord: 3..84
NoneNo IPR availablePANTHERPTHR10774EXTENDED SYNAPTOTAGMIN-RELATEDcoord: 3..84

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0017515 ID=g.arboreum_cottongen_reftransV1_0017515; Name=g.arboreum_cottongen_reftransV1_0017515; organism=Gossypium arboreum; type=contig; length=455bp
CTGCAGGATTAGAACAGACACTACCATGGATCTTTTATCACAAGGTTATT
GGAGTTTCAACCTTTTTCCTTTTTGTTGAGGGGAAGGCTGCCTCTCCTAA
TGTATCTAAAGTCCTAGAATCGATTCCAGGGGTGAAAGTGATATACAGAA
CAAAAGAATTAGAGGAACAACAAGCTAAAAGTCGGATTTGGAATGAGACC
TGGTTGGCAAGTTTCTTCTACAAACCATGTAACTACGAGTTGTTTGTGAA
GCAATCCCTTAATATGGAAATGTCTATTGTCATGGCAAGGGATGCTGGCA
TGGATTGGATTATTCATCTTGACACCGATGAGCTTATACATCCCGTGGGT
GCTCGCGAGTACTCTTTGAGACAATTATTGGCAGGTGTACCTGGAAATGT
TGATATGGTTGTCTTCCCAAATTATGAAAGCAGTGTTGAGCGGGATGATG
TCAAG
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