g.arboreum_cottongen_reftransV1_0021606, g.arboreum_cottongen_reftransV1_0021606 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: V4VUW4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021043mg PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.249e-48 Identity = 79/105 (75.24%), Postives = 94/105 (89.52%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 FKSQQ+HLNYFFQ+L L+FTQTLL RGTIFF+GVGKSGFVA+KISQTL+SL I+S FL+PLDALHGDIG LSS D+LV+FSKSG+TEELL+++PCA+AKG Sbjct: 24 FKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKG 128
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: M5VNT1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007700mg PE=3 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 2.334e-48 Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLL---NSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 FKSQQ+HLN+FFQ+LD SQ LSFT+TLL ++ T+FFSGVGKSGFVA KISQTLVSL IRS FLSPLDALHGDIGALS +DVLVLFSKSG+TEELLRL+PCA+AKG Sbjct: 43 FKSQQSHLNFFFQHLDLSQTLSFTRTLLLQSSAGATVFFSGVGKSGFVAHKISQTLVSLGIRSGFLSPLDALHGDIGALSKSDVLVLFSKSGTTEELLRLVPCAKAKG 150
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: K4BJM9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g098140.2 PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 7.861e-48 Identity = 78/104 (75.00%), Postives = 95/104 (91.35%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAK 493 FK+QQN+LN+FFQNLD SQ L+FTQTLLN++G+I+F+GVGKSGFV+ KISQTLVSL I+S FLSP+DALHGDIG L DVLV+FSKSG+TEELL+L+PCA+AK Sbjct: 31 FKAQQNYLNHFFQNLDLSQTLNFTQTLLNAKGSIYFTGVGKSGFVSQKISQTLVSLGIKSGFLSPVDALHGDIGILDPQDVLVMFSKSGNTEELLKLVPCAKAK 134
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: I1N9R7_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 7.934e-48 Identity = 78/105 (74.29%), Postives = 95/105 (90.48%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 FKSQQ+HLN+FF ++D SQ L+FT+ LLN+ GT+FF+GVGKSGFVA KISQTLVSL +RS+FLSP+DALHGDIG L++ DVL+L SKSG+TEELLRL+PCARAKG Sbjct: 30 FKSQQSHLNFFFDHIDHSQTLAFTRALLNAAGTVFFTGVGKSGFVAHKISQTLVSLGVRSAFLSPVDALHGDIGILTNRDVLILLSKSGATEELLRLVPCARAKG 134
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: S8CAL1_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_10910 PE=4 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 9.054e-48 Identity = 80/105 (76.19%), Postives = 92/105 (87.62%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 FKSQQN+LN+FF NLD SQ + FT L N+RGTIFFSGVGKSGFV+ KISQTLVSL I+S FLSP+DALHGDIG LS D+LVLFSKSG++EELLRL+PCA+AKG Sbjct: 5 FKSQQNYLNHFFHNLDLSQTVVFTHALFNARGTIFFSGVGKSGFVSQKISQTLVSLGIKSGFLSPVDALHGDIGILSPEDLLVLFSKSGNSEELLRLVPCAKAKG 109
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: SETH3_ARATH (Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana GN=SETH3 PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 2.116e-41 Identity = 79/105 (75.24%), Postives = 93/105 (88.57%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 FKSQQ+ LN+FF++LD SQ L F++ LL++ GT+FF+GVGKS FVA+K+SQTLVSL RSSFLSPLDALHGDIGALS DVLV FSKSG+TEELLRL+PCARAKG Sbjct: 38 FKSQQDLLNHFFKHLDLSQTLDFSRILLSTTGTVFFTGVGKSAFVANKVSQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEELLRLVPCARAKG 142
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y526_CHLPN (Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 OS=Chlamydia pneumoniae GN=CPn_0526 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.439e-22 Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 2 Query: 191 QQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478 Q+ +++FFQ +A+ + +L G +FFSGVGKSG VA K+ TL SL R+ F SP+D LHGD+G +S D++ LFSKSG T+ELL +P Sbjct: 18 QKEAVDFFFQAFQPKEAMQLAEKILGHSGWVFFSGVGKSGCVARKLVATLQSLSERALFFSPVDLLHGDLGLVSPGDIVCLFSKSGETQELLDTVP 113
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y679_CHLMU (Uncharacterized protein TC_0679 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=TC_0679 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.693e-17 Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478 F Q+ ++ +F N T+ LL +G +FFSG+GKSG +A K+ T+ S ++ FLS D LHGD+G +SS D++ LFS SG T E+L +P Sbjct: 15 FHKQKQVISRYFANFHCDVVRQLTERLLCHQGAVFFSGIGKSGCIARKLVATMQSFGEKAFFLSG-DLLHGDLGVVSSGDIVCLFSNSGETREILEWIP 112
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KPSF_ECOL6 (Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=kpsF PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 1.188e-16 Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478 Q L + LD Q ++N +G + SG+GKSG V KIS TL S S F+ P +A HGD+G ++ D+L+L S SG T+E+L+L+P Sbjct: 26 LAEQSAALQNLSKQLDSGQYQRVLNLIMNCKGHVILSGMGKSGHVGRKISATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILISASGETDEILKLVP 124
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y399_CHLTR (Uncharacterized protein CT_399 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=CT_399 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.278e-16 Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478 F Q+ ++ +F + + T+ LL +G++FFSG+GKSG +A K+ T+ S ++ FLS D LHGD+G +S D++ LFS SG T E+L +P Sbjct: 15 FHKQKQVISQYFASFHYDCVHQLTEKLLCHQGSLFFSGIGKSGCIARKLVATMQSFGEKAFFLSG-DLLHGDLGVVSPGDIVCLFSNSGETREILEWIP 112
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KPSF1_ECOLX (Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli GN=kpsF PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.945e-16 Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 2 Query: 203 LNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478 L + LD Q ++N +G + SG+GKSG V K+S TL S S F+ P +A HGD+G ++ D+L+L S SG T+E+L+L+P Sbjct: 33 LQNLSKQLDSGQYQRVLNLIMNCKGHVILSGMGKSGHVGRKMSATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILISASGETDEILKLVP 124
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KPSF5_ECOLX (Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli GN=kpsF PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.987e-16 Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478 Q L + LD Q ++N +G + SG+GKSG V K+S TL S S F+ P +A HGD+G ++ D+L+L S SG T+E+L+L+P Sbjct: 26 LAEQSAALQNLSKQLDSGQYQRVLNLIMNCKGHVILSGMGKSGHVGRKMSATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILISASGETDEILKLVP 124
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y1546_AQUAE (Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus (strain VF5) GN=aq_1546 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.762e-15 Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLD--FSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARA 490 + + L +LD FS+A+ + L N G + +G+GKSG +A KIS TL S S FL P +ALHGD+G L S D L+ S SG + E+L +L A+A Sbjct: 14 IREEIKGLERLLSSLDENFSKAV---EILRNCEGKVILTGIGKSGHIARKISSTLSSTGTPSVFLHPAEALHGDMGLLDSKDALIAISNSGESTEVLYVLQYAKA 115
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KDSD_PSEAE (Arabinose 5-phosphate isomerase KdsD OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=kdsD PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 2.550e-12 Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 2 Query: 227 DFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 DF +A + LL +G + G+GKSG V KI+ TL S S F+ P +A HGD+G ++ DV++ S SGST E++ LLP + G Sbjct: 34 DFVKA---CELLLAGKGRVVVVGMGKSGHVGKKIAATLASTGTPSFFVHPAEASHGDMGMITKDDVVLALSNSGSTAEIVTLLPLIKRLG 120
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y505_RICPR (Uncharacterized protein RP505 OS=Rickettsia prowazekii (strain Madrid E) GN=RP505 PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 4.218e-12 Identity = 31/83 (37.35%), Postives = 55/83 (66.27%), Query Frame = 2 Query: 227 DFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLL 475 DF++ + F LL+ +G I +G+GKSG++A KI+ + S + S +L P +A HGD+G ++ D++++ S SG T+EL ++ Sbjct: 32 DFNRIIEF---LLSFKGRIILTGIGKSGYIARKIAASFSSTGMPSFYLHPAEASHGDLGMITRNDLVMMLSNSGETKELFNII 111 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0021606 ID=g.arboreum_cottongen_reftransV1_0021606; Name=g.arboreum_cottongen_reftransV1_0021606; organism=Gossypium arboreum; type=contig; length=497bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|