g.arboreum_cottongen_reftransV1_0021606, g.arboreum_cottongen_reftransV1_0021606 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0021606
Unique Nameg.arboreum_cottongen_reftransV1_0021606
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length497
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0021606:1..497 .
Chr9:72317608..72318104 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: V4VUW4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021043mg PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.249e-48
Identity = 79/105 (75.24%), Postives = 94/105 (89.52%), Query Frame = 2
Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQ+HLNYFFQ+L     L+FTQTLL  RGTIFF+GVGKSGFVA+KISQTL+SL I+S FL+PLDALHGDIG LSS D+LV+FSKSG+TEELL+++PCA+AKG
Sbjct:   24 FKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKG 128          
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: M5VNT1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007700mg PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.334e-48
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 2
Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLL---NSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQ+HLN+FFQ+LD SQ LSFT+TLL   ++  T+FFSGVGKSGFVA KISQTLVSL IRS FLSPLDALHGDIGALS +DVLVLFSKSG+TEELLRL+PCA+AKG
Sbjct:   43 FKSQQSHLNFFFQHLDLSQTLSFTRTLLLQSSAGATVFFSGVGKSGFVAHKISQTLVSLGIRSGFLSPLDALHGDIGALSKSDVLVLFSKSGTTEELLRLVPCAKAKG 150          
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: K4BJM9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g098140.2 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.861e-48
Identity = 78/104 (75.00%), Postives = 95/104 (91.35%), Query Frame = 2
Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAK 493
            FK+QQN+LN+FFQNLD SQ L+FTQTLLN++G+I+F+GVGKSGFV+ KISQTLVSL I+S FLSP+DALHGDIG L   DVLV+FSKSG+TEELL+L+PCA+AK
Sbjct:   31 FKAQQNYLNHFFQNLDLSQTLNFTQTLLNAKGSIYFTGVGKSGFVSQKISQTLVSLGIKSGFLSPVDALHGDIGILDPQDVLVMFSKSGNTEELLKLVPCAKAK 134          
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: I1N9R7_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.934e-48
Identity = 78/105 (74.29%), Postives = 95/105 (90.48%), Query Frame = 2
Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQ+HLN+FF ++D SQ L+FT+ LLN+ GT+FF+GVGKSGFVA KISQTLVSL +RS+FLSP+DALHGDIG L++ DVL+L SKSG+TEELLRL+PCARAKG
Sbjct:   30 FKSQQSHLNFFFDHIDHSQTLAFTRALLNAAGTVFFTGVGKSGFVAHKISQTLVSLGVRSAFLSPVDALHGDIGILTNRDVLILLSKSGATEELLRLVPCARAKG 134          
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: S8CAL1_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_10910 PE=4 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 9.054e-48
Identity = 80/105 (76.19%), Postives = 92/105 (87.62%), Query Frame = 2
Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQN+LN+FF NLD SQ + FT  L N+RGTIFFSGVGKSGFV+ KISQTLVSL I+S FLSP+DALHGDIG LS  D+LVLFSKSG++EELLRL+PCA+AKG
Sbjct:    5 FKSQQNYLNHFFHNLDLSQTVVFTHALFNARGTIFFSGVGKSGFVSQKISQTLVSLGIKSGFLSPVDALHGDIGILSPEDLLVLFSKSGNSEELLRLVPCAKAKG 109          
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: SETH3_ARATH (Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana GN=SETH3 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.116e-41
Identity = 79/105 (75.24%), Postives = 93/105 (88.57%), Query Frame = 2
Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQ+ LN+FF++LD SQ L F++ LL++ GT+FF+GVGKS FVA+K+SQTLVSL  RSSFLSPLDALHGDIGALS  DVLV FSKSG+TEELLRL+PCARAKG
Sbjct:   38 FKSQQDLLNHFFKHLDLSQTLDFSRILLSTTGTVFFTGVGKSAFVANKVSQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEELLRLVPCARAKG 142          
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y526_CHLPN (Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 OS=Chlamydia pneumoniae GN=CPn_0526 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.439e-22
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  191 QQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            Q+  +++FFQ     +A+   + +L   G +FFSGVGKSG VA K+  TL SL  R+ F SP+D LHGD+G +S  D++ LFSKSG T+ELL  +P
Sbjct:   18 QKEAVDFFFQAFQPKEAMQLAEKILGHSGWVFFSGVGKSGCVARKLVATLQSLSERALFFSPVDLLHGDLGLVSPGDIVCLFSKSGETQELLDTVP 113          
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y679_CHLMU (Uncharacterized protein TC_0679 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=TC_0679 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.693e-17
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 2
Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            F  Q+  ++ +F N         T+ LL  +G +FFSG+GKSG +A K+  T+ S   ++ FLS  D LHGD+G +SS D++ LFS SG T E+L  +P
Sbjct:   15 FHKQKQVISRYFANFHCDVVRQLTERLLCHQGAVFFSGIGKSGCIARKLVATMQSFGEKAFFLSG-DLLHGDLGVVSSGDIVCLFSNSGETREILEWIP 112          
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KPSF_ECOL6 (Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=kpsF PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.188e-16
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
               Q   L    + LD  Q       ++N +G +  SG+GKSG V  KIS TL S    S F+ P +A HGD+G ++  D+L+L S SG T+E+L+L+P
Sbjct:   26 LAEQSAALQNLSKQLDSGQYQRVLNLIMNCKGHVILSGMGKSGHVGRKISATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILISASGETDEILKLVP 124          
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y399_CHLTR (Uncharacterized protein CT_399 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=CT_399 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.278e-16
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            F  Q+  ++ +F +  +      T+ LL  +G++FFSG+GKSG +A K+  T+ S   ++ FLS  D LHGD+G +S  D++ LFS SG T E+L  +P
Sbjct:   15 FHKQKQVISQYFASFHYDCVHQLTEKLLCHQGSLFFSGIGKSGCIARKLVATMQSFGEKAFFLSG-DLLHGDLGVVSPGDIVCLFSNSGETREILEWIP 112          
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KPSF1_ECOLX (Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli GN=kpsF PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.945e-16
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  203 LNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            L    + LD  Q       ++N +G +  SG+GKSG V  K+S TL S    S F+ P +A HGD+G ++  D+L+L S SG T+E+L+L+P
Sbjct:   33 LQNLSKQLDSGQYQRVLNLIMNCKGHVILSGMGKSGHVGRKMSATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILISASGETDEILKLVP 124          
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KPSF5_ECOLX (Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli GN=kpsF PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.987e-16
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
               Q   L    + LD  Q       ++N +G +  SG+GKSG V  K+S TL S    S F+ P +A HGD+G ++  D+L+L S SG T+E+L+L+P
Sbjct:   26 LAEQSAALQNLSKQLDSGQYQRVLNLIMNCKGHVILSGMGKSGHVGRKMSATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILISASGETDEILKLVP 124          
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y1546_AQUAE (Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus (strain VF5) GN=aq_1546 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.762e-15
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  182 FKSQQNHLNYFFQNLD--FSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARA 490
             + +   L     +LD  FS+A+   + L N  G +  +G+GKSG +A KIS TL S    S FL P +ALHGD+G L S D L+  S SG + E+L +L  A+A
Sbjct:   14 IREEIKGLERLLSSLDENFSKAV---EILRNCEGKVILTGIGKSGHIARKISSTLSSTGTPSVFLHPAEALHGDMGLLDSKDALIAISNSGESTEVLYVLQYAKA 115          
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KDSD_PSEAE (Arabinose 5-phosphate isomerase KdsD OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=kdsD PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.550e-12
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  227 DFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            DF +A    + LL  +G +   G+GKSG V  KI+ TL S    S F+ P +A HGD+G ++  DV++  S SGST E++ LLP  +  G
Sbjct:   34 DFVKA---CELLLAGKGRVVVVGMGKSGHVGKKIAATLASTGTPSFFVHPAEASHGDMGMITKDDVVLALSNSGSTAEIVTLLPLIKRLG 120          
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y505_RICPR (Uncharacterized protein RP505 OS=Rickettsia prowazekii (strain Madrid E) GN=RP505 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.218e-12
Identity = 31/83 (37.35%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  227 DFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLL 475
            DF++ + F   LL+ +G I  +G+GKSG++A KI+ +  S  + S +L P +A HGD+G ++  D++++ S SG T+EL  ++
Sbjct:   32 DFNRIIEF---LLSFKGRIILTGIGKSGYIARKIAASFSSTGMPSFYLHPAEASHGDLGMITRNDLVMMLSNSGETKELFNII 111          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V4VUW4_9ROSI1.249e-4875.24Uncharacterized protein OS=Citrus clementina GN=CI... [more]
M5VNT1_PRUPE2.334e-4879.63Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
K4BJM9_SOLLC7.861e-4875.00Uncharacterized protein OS=Solanum lycopersicum GN... [more]
I1N9R7_SOYBN7.934e-4874.29Uncharacterized protein OS=Glycine max PE=3 SV=1[more]
S8CAL1_9LAMI9.054e-4876.19Uncharacterized protein (Fragment) OS=Genlisea aur... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SETH3_ARATH2.116e-4175.24Probable arabinose 5-phosphate isomerase OS=Arabid... [more]
Y526_CHLPN1.439e-2247.92Uncharacterized protein CPn_0526/CP_0226/CPj0526/C... [more]
Y679_CHLMU2.693e-1741.41Uncharacterized protein TC_0679 OS=Chlamydia murid... [more]
KPSF_ECOL61.188e-1639.39Arabinose 5-phosphate isomerase KpsF OS=Escherichi... [more]
Y399_CHLTR2.278e-1639.39Uncharacterized protein CT_399 OS=Chlamydia tracho... [more]
KPSF1_ECOLX3.945e-1640.22Arabinose 5-phosphate isomerase KpsF OS=Escherichi... [more]
KPSF5_ECOLX3.987e-1638.38Arabinose 5-phosphate isomerase KpsF OS=Escherichi... [more]
Y1546_AQUAE1.762e-1540.95Uncharacterized phosphosugar isomerase aq_1546 OS=... [more]
KDSD_PSEAE2.550e-1241.11Arabinose 5-phosphate isomerase KdsD OS=Pseudomona... [more]
Y505_RICPR4.218e-1237.35Uncharacterized protein RP505 OS=Rickettsia prowaz... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.10490coord: 49..154
e-value: 5.1E-18
score: 64.6
NoneNo IPR availablePANTHERPTHR38418:SF1SUBFAMILY NOT NAMEDcoord: 65..148
NoneNo IPR availablePANTHERPTHR38418FAMILY NOT NAMEDcoord: 65..148
NoneNo IPR availableSUPERFAMILY53697SIS domaincoord: 48..154
IPR001347Sugar isomerase (SIS)PFAMPF01380SIScoord: 77..154
e-value: 2.7E-10
score: 40.0
IPR001347Sugar isomerase (SIS)PROSITEPS51464SIScoord: 72..154
score: 14.927

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0021606 ID=g.arboreum_cottongen_reftransV1_0021606; Name=g.arboreum_cottongen_reftransV1_0021606; organism=Gossypium arboreum; type=contig; length=497bp
AAACGCGCTCTCTTTCTTCCTTCGCAAACATTTTATGCAAAAGGAAACAA
CGGAGAAAAAATATCAAGATCTGAGAGCATCAACAATGGGGTCGCTTCCT
CCGTCACTGGACCTCCCATTACCGCCGTTGGGAAAGCCCCCTCACCTCCA
ACTCCTTTCCGAAACTACCCTTCTCAACCTCTTCAAATCCCAACAAAACC
ACCTCAATTACTTCTTCCAAAACCTCGACTTTTCCCAAGCATTATCCTTC
ACCCAAACCCTCCTCAATTCTCGTGGCACCATTTTCTTCTCCGGTGTCGG
AAAATCCGGTTTCGTCGCCAGCAAGATCTCCCAAACCCTAGTCTCCCTAG
ACATCCGCTCCTCTTTCCTCTCCCCTCTCGACGCTCTCCACGGCGACATT
GGCGCACTCTCCTCTGCCGACGTTCTCGTCCTCTTTTCTAAATCCGGCTC
CACTGAAGAACTCCTTCGTCTCCTTCCCTGTGCCAGAGCCAAGGGGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001347SIS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process