g.arboreum_cottongen_reftransV1_0021606, g.arboreum_cottongen_reftransV1_0021606 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0021606
Unique Name	g.arboreum_cottongen_reftransV1_0021606
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	497

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr9	chromosome	g.arboreum_cottongen_reftransV1_0021606:1..497 . Chr9:72317608..72318104 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A9PBR5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03850g PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 6.242e-54
Identity = 87/105 (82.86%), Postives = 99/105 (94.29%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQNHLNYFF+NLD SQ L+FTQTLL+  GTIFFSGVGKSGFVA+KISQTL+SL IR+ FLSPLDALHGDIGALS++D+LVLFSKSG+TEELLRL+PCA+AKG
Sbjct:   29 FKSQQNHLNYFFRNLDLSQTLTFTQTLLHCNGTIFFSGVGKSGFVANKISQTLISLGIRAGFLSPLDALHGDIGALSASDILVLFSKSGNTEELLRLVPCAKAKG 133

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: B9T1C0_RICCO (Polysialic acid capsule expression protein kpsF, putative OS=Ricinus communis GN=RCOM_0500130 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.510e-53
Identity = 86/105 (81.90%), Postives = 97/105 (92.38%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQNHLNYFFQNLD SQ LSFTQTLLNSRGTI F+GVGKSGFVA+KISQTLVSL IR+ FLSP+DALHGDIG L+  D+LV+FSKSG+T+ELLRL+PCA+AKG
Sbjct:   28 FKSQQNHLNYFFQNLDISQTLSFTQTLLNSRGTILFTGVGKSGFVANKISQTLVSLGIRAGFLSPVDALHGDIGILTPRDILVMFSKSGNTDELLRLVPCAKAKG 132

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: W9S4D6_9ROSA (Putative arabinose 5-phosphate isomerase OS=Morus notabilis GN=L484_005651 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.660e-51
Identity = 84/105 (80.00%), Postives = 97/105 (92.38%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQ+HLN+FF+NLD SQ L+FTQTLLN RGTIFFSGVGKSGFVA KISQTLVSL +RS FLSP+DALHGDIG L++ D+LVLFSKSG+T+ELLRL+PCA+AKG
Sbjct:   34 FKSQQDHLNFFFRNLDLSQTLAFTQTLLNCRGTIFFSGVGKSGFVARKISQTLVSLAVRSGFLSPVDALHGDIGILTANDILVLFSKSGNTDELLRLVPCAKAKG 138

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A068VJ03_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_1379 OS=Coffea canephora GN=GSCOC_T00000092001 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.691e-51
Identity = 86/105 (81.90%), Postives = 96/105 (91.43%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FK+QQ +LN+FFQNLD SQ LSFTQTLLNS GTIFF+GVGKSGFVA KISQTLVSL I+S FLSP+DALHGDIG LSSADVLV+FSKSG+TEEL+RL PCA+AKG
Sbjct:   34 FKTQQKYLNHFFQNLDLSQTLSFTQTLLNSTGTIFFTGVGKSGFVAQKISQTLVSLGIKSGFLSPVDALHGDIGILSSADVLVMFSKSGNTEELVRLAPCAKAKG 138

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A072UDP6_MEDTR (Arabinose 5-phosphate isomerase, putative OS=Medicago truncatula GN=MTR_7g097060 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.798e-50
Identity = 84/105 (80.00%), Postives = 94/105 (89.52%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQNHLN+FF  +D SQ LSFT+ LLN+ GT+FF+GVGKSGFVA KISQTLVSL IRSSFLSP+DALHGDIG LS +DVLVL SKSG+TEELLRL+PCARAKG
Sbjct:   30 FKSQQNHLNFFFDRIDHSQTLSFTRALLNTTGTVFFTGVGKSGFVAHKISQTLVSLGIRSSFLSPVDALHGDIGILSDSDVLVLLSKSGATEELLRLVPCARAKG 134

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A022Q3N8_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a009312mg PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 5.515e-50
Identity = 83/105 (79.05%), Postives = 96/105 (91.43%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FK QQN+LN+FFQNLD SQ L+FT+TLLN++GTIFFSGVGKSGFVA KISQTLVSL IRS FLSP+DALHGDIG LSS D+LVLFSKSG++EELL+L+PCA+ KG
Sbjct:   34 FKCQQNYLNHFFQNLDISQTLAFTETLLNAKGTIFFSGVGKSGFVAQKISQTLVSLGIRSGFLSPVDALHGDIGILSSRDLLVLFSKSGNSEELLKLVPCAKTKG 138

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: V4T9S5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021043mg PE=4 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.075e-49
Identity = 79/105 (75.24%), Postives = 94/105 (89.52%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQ+HLNYFFQ+L     L+FTQTLL  RGTIFF+GVGKSGFVA+KISQTL+SL I+S FL+PLDALHGDIG LSS D+LV+FSKSG+TEELL+++PCA+AKG
Sbjct:   24 FKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKG 128

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: M1D2D5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402031052 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 7.905e-49
Identity = 80/104 (76.92%), Postives = 95/104 (91.35%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAK 493
            FK+QQN+LN+FFQNLD SQ LSFTQTLLN++GTI+F+GVGKSGFV+ KISQTLVSL I+S FLSP+DALHGDIG L   DVLV+FSKSG+TEELL+L+PCA+AK
Sbjct:   30 FKAQQNYLNHFFQNLDLSQTLSFTQTLLNAKGTIYFTGVGKSGFVSQKISQTLVSLGIKSGFLSPVDALHGDIGILDPQDVLVMFSKSGNTEELLKLVPCAKAK 133

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: V7CYS4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G161500g PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.944e-49
Identity = 80/105 (76.19%), Postives = 95/105 (90.48%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQ+HLN+FF ++D+SQ L+FT+ LLN+ GT+FF+GVGKSGFVA KISQTLVSL IRS+FLSP+DALHGDIG L+  DVLVL SKSG+TEELLRL+PCARAKG
Sbjct:   33 FKSQQSHLNFFFDHIDYSQTLAFTRALLNASGTVFFTGVGKSGFVAHKISQTLVSLGIRSAFLSPVDALHGDIGILTDRDVLVLLSKSGATEELLRLVPCARAKG 137

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A067EZD3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019775mg PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.249e-48
Identity = 79/105 (75.24%), Postives = 94/105 (89.52%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQ+HLNYFFQ+L     L+FTQTLL  RGTIFF+GVGKSGFVA+KISQTL+SL I+S FL+PLDALHGDIG LSS D+LV+FSKSG+TEELL+++PCA+AKG
Sbjct:   24 FKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKG 128

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: SETH3_ARATH (Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana GN=SETH3 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.116e-41
Identity = 79/105 (75.24%), Postives = 93/105 (88.57%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQ+ LN+FF++LD SQ L F++ LL++ GT+FF+GVGKS FVA+K+SQTLVSL  RSSFLSPLDALHGDIGALS  DVLV FSKSG+TEELLRL+PCARAKG
Sbjct:   38 FKSQQDLLNHFFKHLDLSQTLDFSRILLSTTGTVFFTGVGKSAFVANKVSQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEELLRLVPCARAKG 142

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y526_CHLPN (Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 OS=Chlamydia pneumoniae GN=CPn_0526 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.439e-22
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 2

Query:  191 QQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            Q+  +++FFQ     +A+   + +L   G +FFSGVGKSG VA K+  TL SL  R+ F SP+D LHGD+G +S  D++ LFSKSG T+ELL  +P
Sbjct:   18 QKEAVDFFFQAFQPKEAMQLAEKILGHSGWVFFSGVGKSGCVARKLVATLQSLSERALFFSPVDLLHGDLGLVSPGDIVCLFSKSGETQELLDTVP 113

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y679_CHLMU (Uncharacterized protein TC_0679 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=TC_0679 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.693e-17
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            F  Q+  ++ +F N         T+ LL  +G +FFSG+GKSG +A K+  T+ S   ++ FLS  D LHGD+G +SS D++ LFS SG T E+L  +P
Sbjct:   15 FHKQKQVISRYFANFHCDVVRQLTERLLCHQGAVFFSGIGKSGCIARKLVATMQSFGEKAFFLSG-DLLHGDLGVVSSGDIVCLFSNSGETREILEWIP 112

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KPSF_ECOL6 (Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=kpsF PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.188e-16
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
               Q   L    + LD  Q       ++N +G +  SG+GKSG V  KIS TL S    S F+ P +A HGD+G ++  D+L+L S SG T+E+L+L+P
Sbjct:   26 LAEQSAALQNLSKQLDSGQYQRVLNLIMNCKGHVILSGMGKSGHVGRKISATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILISASGETDEILKLVP 124

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y399_CHLTR (Uncharacterized protein CT_399 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=CT_399 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.278e-16
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            F  Q+  ++ +F +  +      T+ LL  +G++FFSG+GKSG +A K+  T+ S   ++ FLS  D LHGD+G +S  D++ LFS SG T E+L  +P
Sbjct:   15 FHKQKQVISQYFASFHYDCVHQLTEKLLCHQGSLFFSGIGKSGCIARKLVATMQSFGEKAFFLSG-DLLHGDLGVVSPGDIVCLFSNSGETREILEWIP 112

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KPSF1_ECOLX (Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli GN=kpsF PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.945e-16
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 2

Query:  203 LNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            L    + LD  Q       ++N +G +  SG+GKSG V  K+S TL S    S F+ P +A HGD+G ++  D+L+L S SG T+E+L+L+P
Sbjct:   33 LQNLSKQLDSGQYQRVLNLIMNCKGHVILSGMGKSGHVGRKMSATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILISASGETDEILKLVP 124

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KPSF5_ECOLX (Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli GN=kpsF PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.987e-16
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
               Q   L    + LD  Q       ++N +G +  SG+GKSG V  K+S TL S    S F+ P +A HGD+G ++  D+L+L S SG T+E+L+L+P
Sbjct:   26 LAEQSAALQNLSKQLDSGQYQRVLNLIMNCKGHVILSGMGKSGHVGRKMSATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILISASGETDEILKLVP 124

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y1546_AQUAE (Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus (strain VF5) GN=aq_1546 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.762e-15
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLD--FSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARA 490
             + +   L     +LD  FS+A+   + L N  G +  +G+GKSG +A KIS TL S    S FL P +ALHGD+G L S D L+  S SG + E+L +L  A+A
Sbjct:   14 IREEIKGLERLLSSLDENFSKAV---EILRNCEGKVILTGIGKSGHIARKISSTLSSTGTPSVFLHPAEALHGDMGLLDSKDALIAISNSGESTEVLYVLQYAKA 115

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KDSD_PSEAE (Arabinose 5-phosphate isomerase KdsD OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=kdsD PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.550e-12
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 2

Query:  227 DFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            DF +A    + LL  +G +   G+GKSG V  KI+ TL S    S F+ P +A HGD+G ++  DV++  S SGST E++ LLP  +  G
Sbjct:   34 DFVKA---CELLLAGKGRVVVVGMGKSGHVGKKIAATLASTGTPSFFVHPAEASHGDMGMITKDDVVLALSNSGSTAEIVTLLPLIKRLG 120

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y505_RICPR (Uncharacterized protein RP505 OS=Rickettsia prowazekii (strain Madrid E) GN=RP505 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.218e-12
Identity = 31/83 (37.35%), Postives = 55/83 (66.27%), Query Frame = 2

Query:  227 DFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLL 475
            DF++ + F   LL+ +G I  +G+GKSG++A KI+ +  S  + S +L P +A HGD+G ++  D++++ S SG T+EL  ++
Sbjct:   32 DFNRIIEF---LLSFKGRIILTGIGKSGYIARKIAASFSSTGMPSFYLHPAEASHGDLGMITRNDLVMMLSNSGETKELFNII 111

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A9PBR5_POPTR	6.242e-54	82.86	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
B9T1C0_RICCO	1.510e-53	81.90	Polysialic acid capsule expression protein kpsF, p...	[more]
W9S4D6_9ROSA	1.660e-51	80.00	Putative arabinose 5-phosphate isomerase OS=Morus ...	[more]
A0A068VJ03_COFCA	3.691e-51	81.90	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
A0A072UDP6_MEDTR	2.798e-50	80.00	Arabinose 5-phosphate isomerase, putative OS=Medic...	[more]
A0A022Q3N8_ERYGU	5.515e-50	79.05	Uncharacterized protein OS=Erythranthe guttata GN=...	[more]
V4T9S5_9ROSI	6.075e-49	75.24	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
M1D2D5_SOLTU	7.905e-49	76.92	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
V7CYS4_PHAVU	7.944e-49	76.19	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
A0A067EZD3_CITSI	1.249e-48	75.24	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
SETH3_ARATH	2.116e-41	75.24	Probable arabinose 5-phosphate isomerase OS=Arabid...	[more]
Y526_CHLPN	1.439e-22	47.92	Uncharacterized protein CPn_0526/CP_0226/CPj0526/C...	[more]
Y679_CHLMU	2.693e-17	41.41	Uncharacterized protein TC_0679 OS=Chlamydia murid...	[more]
KPSF_ECOL6	1.188e-16	39.39	Arabinose 5-phosphate isomerase KpsF OS=Escherichi...	[more]
Y399_CHLTR	2.278e-16	39.39	Uncharacterized protein CT_399 OS=Chlamydia tracho...	[more]
KPSF1_ECOLX	3.945e-16	40.22	Arabinose 5-phosphate isomerase KpsF OS=Escherichi...	[more]
KPSF5_ECOLX	3.987e-16	38.38	Arabinose 5-phosphate isomerase KpsF OS=Escherichi...	[more]
Y1546_AQUAE	1.762e-15	40.95	Uncharacterized phosphosugar isomerase aq_1546 OS=...	[more]
KDSD_PSEAE	2.550e-12	41.11	Arabinose 5-phosphate isomerase KdsD OS=Pseudomona...	[more]
Y505_RICPR	4.218e-12	37.35	Uncharacterized protein RP505 OS=Rickettsia prowaz...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.10490		coord: 49..154 e-value: 5.1E-18 score: 64.6
None	No IPR available	PANTHER	PTHR38418:SF1	SUBFAMILY NOT NAMED	coord: 65..148
None	No IPR available	PANTHER	PTHR38418	FAMILY NOT NAMED	coord: 65..148
None	No IPR available	SUPERFAMILY	53697	SIS domain	coord: 48..154
IPR001347	Sugar isomerase (SIS)	PFAM	PF01380	SIS	coord: 77..154 e-value: 2.7E-10 score: 40.0
IPR001347	Sugar isomerase (SIS)	PROSITE	PS51464	SIS	coord: 72..154 score: 14.927

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0021606 ID=g.arboreum_cottongen_reftransV1_0021606; Name=g.arboreum_cottongen_reftransV1_0021606; organism=Gossypium arboreum; type=contig; length=497bp
AAACGCGCTCTCTTTCTTCCTTCGCAAACATTTTATGCAAAAGGAAACAA
CGGAGAAAAAATATCAAGATCTGAGAGCATCAACAATGGGGTCGCTTCCT
CCGTCACTGGACCTCCCATTACCGCCGTTGGGAAAGCCCCCTCACCTCCA
ACTCCTTTCCGAAACTACCCTTCTCAACCTCTTCAAATCCCAACAAAACC
ACCTCAATTACTTCTTCCAAAACCTCGACTTTTCCCAAGCATTATCCTTC
ACCCAAACCCTCCTCAATTCTCGTGGCACCATTTTCTTCTCCGGTGTCGG
AAAATCCGGTTTCGTCGCCAGCAAGATCTCCCAAACCCTAGTCTCCCTAG
ACATCCGCTCCTCTTTCCTCTCCCCTCTCGACGCTCTCCACGGCGACATT
GGCGCACTCTCCTCTGCCGACGTTCTCGTCCTCTTTTCTAAATCCGGCTC
CACTGAAGAACTCCTTCGTCTCCTTCCCTGTGCCAGAGCCAAGGGGG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001347	SIS_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0030246	carbohydrate binding

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

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g.arboreum_cottongen_reftransV1_0021606, g.arboreum_cottongen_reftransV1_0021606 (contig) Gossypium arboreum

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