g.arboreum_cottongen_reftransV1_0021606, g.arboreum_cottongen_reftransV1_0021606 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A0B0PX72_GOSAR (Putative arabinose 5-phosphate isomerase-like protein OS=Gossypium arboreum GN=F383_06962 PE=3 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 6.297e-75 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 2 Query: 35 MQKETTEKKYQDLRASTMGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 MQKETTEKKYQDLRASTMGSLPPSLDLPLPPLGKPPHLQLLSETTLLNLFKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG Sbjct: 1 MQKETTEKKYQDLRASTMGSLPPSLDLPLPPLGKPPHLQLLSETTLLNLFKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 154
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A0D2QSR4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G147100 PE=4 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 9.154e-64 Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFL PLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG Sbjct: 33 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLCPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 137
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A0D2P917_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G147100 PE=3 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 2.023e-63 Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFL PLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG Sbjct: 33 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLCPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 137
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A061DQP5_THECC (Sugar isomerase domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_004002 PE=3 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.190e-60 Identity = 125/162 (77.16%), Postives = 131/162 (80.86%), Query Frame = 2 Query: 11 SFFLRKHFMQKETTEKKYQDLRASTMGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 FF+ KH EKK DLR S MGSLPPSLDLP PPL KP H + L FKSQQ HLNYFFQNL+ SQ LSFT+TLLNSRGTIFFSGVGKSGFVA KISQTLVSL IRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRL+PCAR+KG Sbjct: 23 PFFISKHI------EKKTSDLRPSIMGSLPPSLDLPTPPLKKPSHQHIPETALLNL-FKSQQEHLNYFFQNLNLSQTLSFTETLLNSRGTIFFSGVGKSGFVAHKISQTLVSLGIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLVPCARSKG 177
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A061DNZ0_THECC (Sugar isomerase domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_004002 PE=4 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 4.138e-60 Identity = 125/162 (77.16%), Postives = 131/162 (80.86%), Query Frame = 2 Query: 11 SFFLRKHFMQKETTEKKYQDLRASTMGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 FF+ KH EKK DLR S MGSLPPSLDLP PPL KP H + L FKSQQ HLNYFFQNL+ SQ LSFT+TLLNSRGTIFFSGVGKSGFVA KISQTLVSL IRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRL+PCAR+KG Sbjct: 23 PFFISKHI------EKKTSDLRPSIMGSLPPSLDLPTPPLKKPSHQHIPETALLNL-FKSQQEHLNYFFQNLNLSQTLSFTETLLNSRGTIFFSGVGKSGFVAHKISQTLVSLGIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLVPCARSKG 177
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A0D2Q0C6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G178500 PE=3 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 1.265e-58 Identity = 95/105 (90.48%), Postives = 102/105 (97.14%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 FK+QQ HLNYFFQNLD SQALSFT+TLLNSRGTIFFSGVGKSGFVA+KISQTLVSL IRS+FLSPLDALHGDIGALS+AD+LVLFSKSGSTEELLRL+PCARAKG Sbjct: 32 FKAQQGHLNYFFQNLDLSQALSFTETLLNSRGTIFFSGVGKSGFVANKISQTLVSLGIRSAFLSPLDALHGDIGALSAADILVLFSKSGSTEELLRLIPCARAKG 136
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A0B0N1M5_GOSAR (Putative arabinose 5-phosphate isomerase-like protein OS=Gossypium arboreum GN=F383_32359 PE=3 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 6.584e-58 Identity = 94/105 (89.52%), Postives = 101/105 (96.19%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 FK+QQ HLNYFFQNLD SQALSFT+TLLNSRGTIFFSGVGKSGFVA+KISQTLVSL IRS+FLSPLDALHGDIGALS+ D+LVLFSKSGSTEELLRL+PCARAKG Sbjct: 32 FKAQQGHLNYFFQNLDLSQALSFTETLLNSRGTIFFSGVGKSGFVANKISQTLVSLGIRSAFLSPLDALHGDIGALSATDILVLFSKSGSTEELLRLIPCARAKG 136
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: B9H8N8_POPTR (Sugar isomerase domain-containing family protein OS=Populus trichocarpa GN=POPTR_0005s24740g PE=3 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.410e-55 Identity = 89/105 (84.76%), Postives = 100/105 (95.24%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 FKSQQNHLNYFFQNL+ SQAL+FTQTLLN GTIFFSGVGKSGFVA+KISQTL+SL IR+ FLSP+DALHGDIGALSS+D+LVLFSKSG+TEELLRL+PCA+AKG Sbjct: 29 FKSQQNHLNYFFQNLNLSQALTFTQTLLNCNGTIFFSGVGKSGFVANKISQTLISLGIRAGFLSPVDALHGDIGALSSSDILVLFSKSGNTEELLRLVPCAKAKG 133
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A067K2N0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17678 PE=3 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 5.627e-54 Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 FKSQQNHLNYFFQNLD SQ LSF Q LLNSRGTIFFSGVGKSGFVA+KISQTL+SL IR+ FLSP+DALHGDIG L+S D+LVLFSKSG+TEELLRL+PCA+AKG Sbjct: 30 FKSQQNHLNYFFQNLDLSQTLSFAQLLLNSRGTIFFSGVGKSGFVANKISQTLISLGIRAGFLSPVDALHGDIGILTSRDILVLFSKSGNTEELLRLVPCAKAKG 134
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A0A0L7X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G379750 PE=3 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 6.043e-54 Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 2 Query: 182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496 FKSQQNHLN+FFQNLD SQ L FT TLLNS GTIFFSGVGKSGFVA KISQTLVSL IRS+FLSPLDALHGDIG L+S DVLV+FSKSG+TEELLRL+PCARAKG Sbjct: 36 FKSQQNHLNFFFQNLDLSQTLKFTATLLNSPGTIFFSGVGKSGFVARKISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVMFSKSGNTEELLRLVPCARAKG 140
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KDSD_SALTI (Arabinose 5-phosphate isomerase KdsD OS=Salmonella typhi GN=kdsD PE=3 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 3.900e-9 Identity = 26/75 (34.67%), Postives = 43/75 (57.33%), Query Frame = 2 Query: 254 QTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478 + + N G + G+GKSG + K++ T S S F+ P +A HGD+G ++ DV++ S SG + E+ L+P Sbjct: 43 EKMFNCTGKVVVMGMGKSGHIGRKMAATFASTGTSSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEIAALIP 117
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KDSD_SALTY (Arabinose 5-phosphate isomerase KdsD OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=kdsD PE=3 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 3.974e-9 Identity = 26/75 (34.67%), Postives = 43/75 (57.33%), Query Frame = 2 Query: 254 QTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478 + + N G + G+GKSG + K++ T S S F+ P +A HGD+G ++ DV++ S SG + E+ L+P Sbjct: 43 EKMFNCTGKVVVMGMGKSGHIGRKMAATFASTGTSSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEIAALIP 117
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KDSD_SHIFL (Arabinose 5-phosphate isomerase KdsD OS=Shigella flexneri GN=kdsD PE=3 SV=2) HSP 1 Score: 56.9954 bits (136), Expect = 6.789e-9 Identity = 28/90 (31.11%), Postives = 47/90 (52.22%), Query Frame = 2 Query: 209 YFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478 Y QN + + + +G + G+GKSG + K++ T S S F+ P +A HGD+G ++ DV++ S SG + E+ L+P Sbjct: 33 YINQNFTLA-----CEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPSEAAHGDLGMVTPQDVVIAISNSGESSEITALIP 117
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KDSD_ECOLI (Arabinose 5-phosphate isomerase KdsD OS=Escherichia coli (strain K12) GN=kdsD PE=1 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 7.457e-9 Identity = 28/90 (31.11%), Postives = 47/90 (52.22%), Query Frame = 2 Query: 209 YFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478 Y QN + + + +G + G+GKSG + K++ T S S F+ P +A HGD+G ++ DV++ S SG + E+ L+P Sbjct: 33 YINQNFTLA-----CEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIP 117
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KDSD_ECOL6 (Arabinose 5-phosphate isomerase KdsD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=kdsD PE=3 SV=2) HSP 1 Score: 56.9954 bits (136), Expect = 7.457e-9 Identity = 28/90 (31.11%), Postives = 47/90 (52.22%), Query Frame = 2 Query: 209 YFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478 Y QN + + + +G + G+GKSG + K++ T S S F+ P +A HGD+G ++ DV++ S SG + E+ L+P Sbjct: 33 YINQNFTLA-----CEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIP 117 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0021606 ID=g.arboreum_cottongen_reftransV1_0021606; Name=g.arboreum_cottongen_reftransV1_0021606; organism=Gossypium arboreum; type=contig; length=497bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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