g.arboreum_cottongen_reftransV1_0021606, g.arboreum_cottongen_reftransV1_0021606 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0021606
Unique Name	g.arboreum_cottongen_reftransV1_0021606
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	497

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis
Chr9	chromosome	g.arboreum_cottongen_reftransV1_0021606:1..497 . Chr9:72317608..72318104 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A0B0PX72_GOSAR (Putative arabinose 5-phosphate isomerase-like protein OS=Gossypium arboreum GN=F383_06962 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 6.297e-75
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 2

Query:   35 MQKETTEKKYQDLRASTMGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            MQKETTEKKYQDLRASTMGSLPPSLDLPLPPLGKPPHLQLLSETTLLNLFKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG
Sbjct:    1 MQKETTEKKYQDLRASTMGSLPPSLDLPLPPLGKPPHLQLLSETTLLNLFKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 154

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A0D2QSR4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G147100 PE=4 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 9.154e-64
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFL PLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG
Sbjct:   33 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLCPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 137

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A0D2P917_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G147100 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 2.023e-63
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFL PLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG
Sbjct:   33 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLCPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 137

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A061DQP5_THECC (Sugar isomerase domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_004002 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.190e-60
Identity = 125/162 (77.16%), Postives = 131/162 (80.86%), Query Frame = 2

Query:   11 SFFLRKHFMQKETTEKKYQDLRASTMGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
             FF+ KH       EKK  DLR S MGSLPPSLDLP PPL KP H  +     L   FKSQQ HLNYFFQNL+ SQ LSFT+TLLNSRGTIFFSGVGKSGFVA KISQTLVSL IRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRL+PCAR+KG
Sbjct:   23 PFFISKHI------EKKTSDLRPSIMGSLPPSLDLPTPPLKKPSHQHIPETALLNL-FKSQQEHLNYFFQNLNLSQTLSFTETLLNSRGTIFFSGVGKSGFVAHKISQTLVSLGIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLVPCARSKG 177

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A061DNZ0_THECC (Sugar isomerase domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_004002 PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 4.138e-60
Identity = 125/162 (77.16%), Postives = 131/162 (80.86%), Query Frame = 2

Query:   11 SFFLRKHFMQKETTEKKYQDLRASTMGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
             FF+ KH       EKK  DLR S MGSLPPSLDLP PPL KP H  +     L   FKSQQ HLNYFFQNL+ SQ LSFT+TLLNSRGTIFFSGVGKSGFVA KISQTLVSL IRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRL+PCAR+KG
Sbjct:   23 PFFISKHI------EKKTSDLRPSIMGSLPPSLDLPTPPLKKPSHQHIPETALLNL-FKSQQEHLNYFFQNLNLSQTLSFTETLLNSRGTIFFSGVGKSGFVAHKISQTLVSLGIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLVPCARSKG 177

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A0D2Q0C6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G178500 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.265e-58
Identity = 95/105 (90.48%), Postives = 102/105 (97.14%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FK+QQ HLNYFFQNLD SQALSFT+TLLNSRGTIFFSGVGKSGFVA+KISQTLVSL IRS+FLSPLDALHGDIGALS+AD+LVLFSKSGSTEELLRL+PCARAKG
Sbjct:   32 FKAQQGHLNYFFQNLDLSQALSFTETLLNSRGTIFFSGVGKSGFVANKISQTLVSLGIRSAFLSPLDALHGDIGALSAADILVLFSKSGSTEELLRLIPCARAKG 136

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A0B0N1M5_GOSAR (Putative arabinose 5-phosphate isomerase-like protein OS=Gossypium arboreum GN=F383_32359 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 6.584e-58
Identity = 94/105 (89.52%), Postives = 101/105 (96.19%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FK+QQ HLNYFFQNLD SQALSFT+TLLNSRGTIFFSGVGKSGFVA+KISQTLVSL IRS+FLSPLDALHGDIGALS+ D+LVLFSKSGSTEELLRL+PCARAKG
Sbjct:   32 FKAQQGHLNYFFQNLDLSQALSFTETLLNSRGTIFFSGVGKSGFVANKISQTLVSLGIRSAFLSPLDALHGDIGALSATDILVLFSKSGSTEELLRLIPCARAKG 136

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: B9H8N8_POPTR (Sugar isomerase domain-containing family protein OS=Populus trichocarpa GN=POPTR_0005s24740g PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.410e-55
Identity = 89/105 (84.76%), Postives = 100/105 (95.24%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQNHLNYFFQNL+ SQAL+FTQTLLN  GTIFFSGVGKSGFVA+KISQTL+SL IR+ FLSP+DALHGDIGALSS+D+LVLFSKSG+TEELLRL+PCA+AKG
Sbjct:   29 FKSQQNHLNYFFQNLNLSQALTFTQTLLNCNGTIFFSGVGKSGFVANKISQTLISLGIRAGFLSPVDALHGDIGALSSSDILVLFSKSGNTEELLRLVPCAKAKG 133

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A067K2N0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17678 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 5.627e-54
Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQNHLNYFFQNLD SQ LSF Q LLNSRGTIFFSGVGKSGFVA+KISQTL+SL IR+ FLSP+DALHGDIG L+S D+LVLFSKSG+TEELLRL+PCA+AKG
Sbjct:   30 FKSQQNHLNYFFQNLDLSQTLSFAQLLLNSRGTIFFSGVGKSGFVANKISQTLISLGIRAGFLSPVDALHGDIGILTSRDILVLFSKSGNTEELLRLVPCAKAKG 134

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Match: A0A0A0L7X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G379750 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 6.043e-54
Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 2

Query:  182 FKSQQNHLNYFFQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLPCARAKG 496
            FKSQQNHLN+FFQNLD SQ L FT TLLNS GTIFFSGVGKSGFVA KISQTLVSL IRS+FLSPLDALHGDIG L+S DVLV+FSKSG+TEELLRL+PCARAKG
Sbjct:   36 FKSQQNHLNFFFQNLDLSQTLKFTATLLNSPGTIFFSGVGKSGFVARKISQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVMFSKSGNTEELLRLVPCARAKG 140

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: GUTQ_SHIFL (Arabinose 5-phosphate isomerase GutQ OS=Shigella flexneri GN=gutQ PE=3 SV=5)

HSP 1 Score: 66.2402 bits (160), Expect = 4.607e-12
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 2

Query:  227 DFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            DF +A +    +L+  G +  SG+GKSG +  KI+ TL S    + F+ P +ALHGD+G + S DV++  S SG  +EL  ++P
Sbjct:   30 DFVRAANI---ILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIP 110

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: GUTQ_ECOLI (Arabinose 5-phosphate isomerase GutQ OS=Escherichia coli (strain K12) GN=gutQ PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 4.652e-12
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 2

Query:  227 DFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            DF +A +    +L+  G +  SG+GKSG +  KI+ TL S    + F+ P +ALHGD+G + S DV++  S SG  +EL  ++P
Sbjct:   30 DFVRAANI---ILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIP 110

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: GUTQ_ECO57 (Arabinose 5-phosphate isomerase GutQ OS=Escherichia coli O157:H7 GN=gutQ PE=3 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 4.652e-12
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 2

Query:  227 DFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            DF +A +    +L+  G +  SG+GKSG +  KI+ TL S    + F+ P +ALHGD+G + S DV++  S SG  +EL  ++P
Sbjct:   30 DFVRAANI---ILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIP 110

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: GUTQ_ECOL6 (Arabinose 5-phosphate isomerase GutQ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=gutQ PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.184e-12
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 2

Query:  227 DFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            DF +A +    +L+  G +  SG+GKSG +  KI+ TL S    + F+ P +ALHGD+G + S DV++  S SG  +EL  ++P
Sbjct:   30 DFVRAANI---ILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIP 110

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: GUTQ_SALTI (Arabinose 5-phosphate isomerase GutQ OS=Salmonella typhi GN=gutQ PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.625e-12
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 2

Query:  227 DFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            DF +A +    +++  G +  SG+GKSG +  KI+ TL S    + F+ P +ALHGD+G + S DV++  S SG  +EL  ++P
Sbjct:   30 DFVRAANI---IIHCEGKVIVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIP 110

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: GUTQ_SALTY (Arabinose 5-phosphate isomerase GutQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=gutQ PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 6.891e-12
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 2

Query:  227 DFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            DF +A +    +++  G +  SG+GKSG +  KI+ TL S    + F+ P +ALHGD+G + S DV++  S SG  +EL  ++P
Sbjct:   30 DFVRAANI---IIHCEGKVIVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIP 110

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: API_HAEIN (Probable arabinose 5-phosphate isomerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1678 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.505e-11
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 2

Query:  227 DFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            DF+Q +     +L   G +   G+GKSG +  K+  T  S    S FL P +A HGD+G L   D+++L S SG T+++ +L+P
Sbjct:   54 DFNQVIDL---ILACEGRLVIGGIGKSGLIGKKMVATFASTGTPSFFLHPTEAFHGDLGMLKPIDIVMLISYSGETDDVNKLIP 134

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: KDSD_YERPE (Arabinose 5-phosphate isomerase KdsD OS=Yersinia pestis GN=kdsD PE=3 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 1.692e-10
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 2

Query:  215 FQNLDFSQALSFTQTLLNSRGTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLLP 478
            + N DFS+A    + +    G +   G+GKSG +  KI+ T  S    + F+ P +A HGD+G ++  D+++  S SG + E+L L+P
Sbjct:   33 YINEDFSRA---CEAIFRCHGKVVVMGMGKSGHIGCKIAATFASTGTPAFFVHPGEASHGDLGMITPQDIVLAISNSGESNEILTLIP 117

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: YE29_HELPJ (Uncharacterized protein jhp_1324 OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=jhp_1324 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.203e-10
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 2

Query:  275 GTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLL 475
            G +   GVGKS  VA KI  +++S   RS+FL P +A+HGD+G +   DV+++ S  G + ELL L+
Sbjct:   50 GKLVIVGVGKSALVAQKIVASMLSTGNRSAFLHPTEAMHGDLGMVEKNDVILMISYGGESLELLNLV 116

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Match: Y1429_HELPY (Uncharacterized protein HP_1429 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_1429 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.960e-10
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 2

Query:  275 GTIFFSGVGKSGFVASKISQTLVSLDIRSSFLSPLDALHGDIGALSSADVLVLFSKSGSTEELLRLL 475
            G +   GVGKS  VA KI  +++S   RS+FL P +A+HGD+G +   DV+++ S  G + ELL L+
Sbjct:   50 GKLVIVGVGKSALVAQKIVASMLSTGNRSAFLHPTEAMHGDLGMVEKNDVVLMISYGGESLELLNLV 116

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0PX72_GOSAR	6.297e-75	100.00	Putative arabinose 5-phosphate isomerase-like prot...	[more]
A0A0D2QSR4_GOSRA	9.154e-64	99.05	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2P917_GOSRA	2.023e-63	99.05	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061DQP5_THECC	2.190e-60	77.16	Sugar isomerase domain-containing protein isoform ...	[more]
A0A061DNZ0_THECC	4.138e-60	77.16	Sugar isomerase domain-containing protein isoform ...	[more]
A0A0D2Q0C6_GOSRA	1.265e-58	90.48	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0N1M5_GOSAR	6.584e-58	89.52	Putative arabinose 5-phosphate isomerase-like prot...	[more]
B9H8N8_POPTR	3.410e-55	84.76	Sugar isomerase domain-containing family protein O...	[more]
A0A067K2N0_JATCU	5.627e-54	83.81	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
A0A0A0L7X3_CUCSA	6.043e-54	85.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0021606 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
GUTQ_SHIFL	4.607e-12	39.29	Arabinose 5-phosphate isomerase GutQ OS=Shigella f...	[more]
GUTQ_ECOLI	4.652e-12	39.29	Arabinose 5-phosphate isomerase GutQ OS=Escherichi...	[more]
GUTQ_ECO57	4.652e-12	39.29	Arabinose 5-phosphate isomerase GutQ OS=Escherichi...	[more]
GUTQ_ECOL6	5.184e-12	39.29	Arabinose 5-phosphate isomerase GutQ OS=Escherichi...	[more]
GUTQ_SALTI	6.625e-12	38.10	Arabinose 5-phosphate isomerase GutQ OS=Salmonella...	[more]
GUTQ_SALTY	6.891e-12	38.10	Arabinose 5-phosphate isomerase GutQ OS=Salmonella...	[more]
API_HAEIN	1.505e-11	36.90	Probable arabinose 5-phosphate isomerase OS=Haemop...	[more]
KDSD_YERPE	1.692e-10	34.09	Arabinose 5-phosphate isomerase KdsD OS=Yersinia p...	[more]
YE29_HELPJ	2.203e-10	43.28	Uncharacterized protein jhp_1324 OS=Helicobacter p...	[more]
Y1429_HELPY	2.960e-10	43.28	Uncharacterized protein HP_1429 OS=Helicobacter py...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.10490		coord: 49..154 e-value: 5.1E-18 score: 64.6
None	No IPR available	PANTHER	PTHR38418:SF1	SUBFAMILY NOT NAMED	coord: 65..148
None	No IPR available	PANTHER	PTHR38418	FAMILY NOT NAMED	coord: 65..148
None	No IPR available	SUPERFAMILY	53697	SIS domain	coord: 48..154
IPR001347	Sugar isomerase (SIS)	PFAM	PF01380	SIS	coord: 77..154 e-value: 2.7E-10 score: 40.0
IPR001347	Sugar isomerase (SIS)	PROSITE	PS51464	SIS	coord: 72..154 score: 14.927

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0021606 ID=g.arboreum_cottongen_reftransV1_0021606; Name=g.arboreum_cottongen_reftransV1_0021606; organism=Gossypium arboreum; type=contig; length=497bp
AAACGCGCTCTCTTTCTTCCTTCGCAAACATTTTATGCAAAAGGAAACAA
CGGAGAAAAAATATCAAGATCTGAGAGCATCAACAATGGGGTCGCTTCCT
CCGTCACTGGACCTCCCATTACCGCCGTTGGGAAAGCCCCCTCACCTCCA
ACTCCTTTCCGAAACTACCCTTCTCAACCTCTTCAAATCCCAACAAAACC
ACCTCAATTACTTCTTCCAAAACCTCGACTTTTCCCAAGCATTATCCTTC
ACCCAAACCCTCCTCAATTCTCGTGGCACCATTTTCTTCTCCGGTGTCGG
AAAATCCGGTTTCGTCGCCAGCAAGATCTCCCAAACCCTAGTCTCCCTAG
ACATCCGCTCCTCTTTCCTCTCCCCTCTCGACGCTCTCCACGGCGACATT
GGCGCACTCTCCTCTGCCGACGTTCTCGTCCTCTTTTCTAAATCCGGCTC
CACTGAAGAACTCCTTCGTCTCCTTCCCTGTGCCAGAGCCAAGGGGG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001347	SIS_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0030246	carbohydrate binding

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

Search form

g.arboreum_cottongen_reftransV1_0021606, g.arboreum_cottongen_reftransV1_0021606 (contig) Gossypium arboreum

Pages

Pages