g.arboreum_cottongen_reftransV1_0010449, g.arboreum_cottongen_reftransV1_0010449 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010449
Unique Nameg.arboreum_cottongen_reftransV1_0010449
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0010449:1..304 .
Chr5:54444230..54445249 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: F8S296_ARATH (Autophagy-related protein 2 OS=Arabidopsis thaliana GN=ATG2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.472e-36
Identity = 68/89 (76.40%), Postives = 77/89 (86.52%), Query Frame = -2
Query:   31 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKS 297
            SKLSL V +F+LYD+S +APW LVL YY+SKDHPR+SSS AFKL+L+AVRPDP TPLEE RLR+ALLPI L LHQSQLDFLISFFG  S
Sbjct: 1493 SKLSLMVQDFYLYDRSDNAPWTLVLGYYNSKDHPRDSSSYAFKLELKAVRPDPETPLEENRLRVALLPILLHLHQSQLDFLISFFGANS 1581          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A059AP78_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01159 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.477e-36
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = -2
Query:    7 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 300
            VSKLS S+ + HLYD+S DAP + VL Y++SKDHPRESSSKAFKLDLEAVRPDP  PLEEYRL IALLP+RL LHQ QLDFL+SFFG +  S D ++ 
Sbjct: 1585 VSKLSFSLQDVHLYDRSKDAPLRQVLGYHNSKDHPRESSSKAFKLDLEAVRPDPLIPLEEYRLCIALLPLRLHLHQRQLDFLVSFFGNEDLSQDWSSG 1682          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A059AMZ7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01159 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.599e-36
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = -2
Query:    7 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 300
            VSKLS S+ + HLYD+S DAP + VL Y++SKDHPRESSSKAFKLDLEAVRPDP  PLEEYRL IALLP+RL LHQ QLDFL+SFFG +  S D ++ 
Sbjct: 1585 VSKLSFSLQDVHLYDRSKDAPLRQVLGYHNSKDHPRESSSKAFKLDLEAVRPDPLIPLEEYRLCIALLPLRLHLHQRQLDFLVSFFGNEDLSQDWSSG 1682          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: B9RYJ4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813690 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.778e-36
Identity = 70/97 (72.16%), Postives = 79/97 (81.44%), Query Frame = -2
Query:   10 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTT 300
             SKLSLSV +F+L D+S  APW  VL YY SK  PRESSSKAFKL+LEAVRPDP TPLEEYRL +ALLP+ LQLHQSQLDFLI+FFG KS+  DQ+ 
Sbjct: 1585 ASKLSLSVQDFYLCDRSKSAPWTRVLGYYRSKGRPRESSSKAFKLELEAVRPDPLTPLEEYRLHVALLPMLLQLHQSQLDFLIAFFGAKSSLADQSA 1681          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A068TLT5_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_1 OS=Coffea canephora GN=GSCOC_T00014422001 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.962e-36
Identity = 64/94 (68.09%), Postives = 79/94 (84.04%), Query Frame = -2
Query:   19 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLD 300
             S+LSL++    + D S +APWKLVL YY SKDHPR+SSSKA K+DLE+VRPDPSTPLEEYRLR+A LP+RL LHQSQL+FLI+FFG + TS++
Sbjct: 1591 ASQLSLAIQYIRVNDNSKNAPWKLVLGYYQSKDHPRKSSSKALKMDLESVRPDPSTPLEEYRLRVAFLPMRLHLHQSQLNFLINFFGGQRTSIN 1684          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_DEBHA (Autophagy-related protein 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ATG2 PE=3 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 1.453e-7
Identity = 29/93 (31.18%), Postives = 45/93 (48.39%), Query Frame = -2
Query:   19 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLD 297
            + + L + +  +YD   ++ W   L Y +S    RE  +   K  +  VRP+P     E  + I++LPIRL + Q  LDF I FF  K    +
Sbjct: 1406 NSIDLRIEDIDIYDNIPNSTWNKFLSYMNSLGE-REIGTSMLKASITNVRPNPELCSTEAMIDISILPIRLHVDQDALDFFIRFFDFKDKRFE 1497          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_MAGO7 (Autophagy-related protein 2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ATG2 PE=3 SV=2)

HSP 1 Score: 51.6026 bits (122), Expect = 3.853e-7
Identity = 30/97 (30.93%), Postives = 46/97 (47.42%), Query Frame = -2
Query:    7 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 297
            S + + + +  +YD    + WK     YD    PRE       L +  VRP      EE  + + +LP+RL + Q  LDF+  FFG K  ++  T+S
Sbjct: 1701 SLIRVHIRDLDVYDHVPTSTWKR-FAMYDEDHGPREMGVPMVDLKVRIVRPVLDVTAEEIVMFVNVLPLRLHVDQDALDFITRFFGFKDDTIKTTSS 1796          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_ASPCL (Autophagy-related protein 2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=atg2 PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 7.410e-7
Identity = 29/85 (34.12%), Postives = 40/85 (47.06%), Query Frame = -2
Query:   43 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFF 297
            S L + V +  ++D    + WK    Y       RES +    L++  VRP P     E  L+  LLP+RL + Q  LDFL  FF
Sbjct: 1755 SSLDVRVRDLEIFDHVPTSTWKKFATYMQEAGE-RESGASMVHLEILTVRPVPELAASEIVLKATLLPLRLHVDQDALDFLCRFF 1838          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_NEUCR (Autophagy-related protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=apg-2 PE=3 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 7.864e-7
Identity = 25/87 (28.74%), Postives = 45/87 (51.72%), Query Frame = -2
Query:   43 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFF 303
            +++ + + +H+  ++D    + WK     YD     RE S     L++  V+P P  P  E  +++ +LP+RL + Q  LDF+  FF
Sbjct: 1654 TINTIDVRIHDLDVFDHIRTSTWKK-FAMYDIDAGERELSKHMVHLEVLNVKPVPDLPATELVVKVNILPLRLHVDQDALDFITRFF 1739          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
F8S296_ARATH1.472e-3676.40Autophagy-related protein 2 OS=Arabidopsis thalian... [more]
A0A059AP78_EUCGR1.477e-3670.41Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A059AMZ7_EUCGR1.599e-3670.41Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
B9RYJ4_RICCO1.778e-3672.16Putative uncharacterized protein OS=Ricinus commun... [more]
A0A068TLT5_COFCA1.962e-3668.09Coffea canephora DH200=94 genomic scaffold, scaffo... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ATG2_DEBHA1.453e-731.18Autophagy-related protein 2 OS=Debaryomyces hansen... [more]
ATG2_MAGO73.853e-730.93Autophagy-related protein 2 OS=Magnaporthe oryzae ... [more]
ATG2_ASPCL7.410e-734.12Autophagy-related protein 2 OS=Aspergillus clavatu... [more]
ATG2_NEUCR7.864e-728.74Autophagy-related protein 2 OS=Neurospora crassa (... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026849Autophagy-related protein 2PANTHERPTHR13190FAMILY NOT NAMEDcoord: 1..75
NoneNo IPR availablePANTHERPTHR13190:SF1AUTOPHAGY-SPECIFIC GENE 2, ISOFORM Acoord: 1..75

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010449 ID=g.arboreum_cottongen_reftransV1_0010449; Name=g.arboreum_cottongen_reftransV1_0010449; organism=Gossypium arboreum; type=contig; length=304bp
ATGACAGCTAGTAGTCTGATCAAGTGAAGTGCTTTTTTCACCAAAAAAGC
TGATGAGAAAATCAAGTTGGCTTTGATGAAGCTGTAACCGGATAGGAAGG
AGGGCAATGCGTAACCGGTATTCCTCAAGAGGTGTAGAAGGATCTGGTCT
TACAGCCTCTAGGTCCAGTTTGAATGCCTTTGAAGAGGATTCCCTAGGAT
GATCTTTTGAATCGTAGTATCTTAGCACCAGTTTCCAAGGTGCATCTGTG
CTCTTGTCATAGAGATGAAACTCATGGACTGAAAGAGAAAGTTTGGACAC
AGAT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR026849ATG2
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy