g.arboreum_cottongen_reftransV1_0010449, g.arboreum_cottongen_reftransV1_0010449 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: F8S296_ARATH (Autophagy-related protein 2 OS=Arabidopsis thaliana GN=ATG2 PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.472e-36 Identity = 68/89 (76.40%), Postives = 77/89 (86.52%), Query Frame = -2 Query: 31 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKS 297 SKLSL V +F+LYD+S +APW LVL YY+SKDHPR+SSS AFKL+L+AVRPDP TPLEE RLR+ALLPI L LHQSQLDFLISFFG S Sbjct: 1493 SKLSLMVQDFYLYDRSDNAPWTLVLGYYNSKDHPRDSSSYAFKLELKAVRPDPETPLEENRLRVALLPILLHLHQSQLDFLISFFGANS 1581
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A059AP78_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01159 PE=4 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.477e-36 Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = -2 Query: 7 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 300 VSKLS S+ + HLYD+S DAP + VL Y++SKDHPRESSSKAFKLDLEAVRPDP PLEEYRL IALLP+RL LHQ QLDFL+SFFG + S D ++ Sbjct: 1585 VSKLSFSLQDVHLYDRSKDAPLRQVLGYHNSKDHPRESSSKAFKLDLEAVRPDPLIPLEEYRLCIALLPLRLHLHQRQLDFLVSFFGNEDLSQDWSSG 1682
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A059AMZ7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01159 PE=4 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.599e-36 Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = -2 Query: 7 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 300 VSKLS S+ + HLYD+S DAP + VL Y++SKDHPRESSSKAFKLDLEAVRPDP PLEEYRL IALLP+RL LHQ QLDFL+SFFG + S D ++ Sbjct: 1585 VSKLSFSLQDVHLYDRSKDAPLRQVLGYHNSKDHPRESSSKAFKLDLEAVRPDPLIPLEEYRLCIALLPLRLHLHQRQLDFLVSFFGNEDLSQDWSSG 1682
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: B9RYJ4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813690 PE=4 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.778e-36 Identity = 70/97 (72.16%), Postives = 79/97 (81.44%), Query Frame = -2 Query: 10 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTT 300 SKLSLSV +F+L D+S APW VL YY SK PRESSSKAFKL+LEAVRPDP TPLEEYRL +ALLP+ LQLHQSQLDFLI+FFG KS+ DQ+ Sbjct: 1585 ASKLSLSVQDFYLCDRSKSAPWTRVLGYYRSKGRPRESSSKAFKLELEAVRPDPLTPLEEYRLHVALLPMLLQLHQSQLDFLIAFFGAKSSLADQSA 1681
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A068TLT5_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_1 OS=Coffea canephora GN=GSCOC_T00014422001 PE=4 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.962e-36 Identity = 64/94 (68.09%), Postives = 79/94 (84.04%), Query Frame = -2 Query: 19 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLD 300 S+LSL++ + D S +APWKLVL YY SKDHPR+SSSKA K+DLE+VRPDPSTPLEEYRLR+A LP+RL LHQSQL+FLI+FFG + TS++ Sbjct: 1591 ASQLSLAIQYIRVNDNSKNAPWKLVLGYYQSKDHPRKSSSKALKMDLESVRPDPSTPLEEYRLRVAFLPMRLHLHQSQLNFLINFFGGQRTSIN 1684
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_DEBHA (Autophagy-related protein 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ATG2 PE=3 SV=2) HSP 1 Score: 52.7582 bits (125), Expect = 1.453e-7 Identity = 29/93 (31.18%), Postives = 45/93 (48.39%), Query Frame = -2 Query: 19 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLD 297 + + L + + +YD ++ W L Y +S RE + K + VRP+P E + I++LPIRL + Q LDF I FF K + Sbjct: 1406 NSIDLRIEDIDIYDNIPNSTWNKFLSYMNSLGE-REIGTSMLKASITNVRPNPELCSTEAMIDISILPIRLHVDQDALDFFIRFFDFKDKRFE 1497
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_MAGO7 (Autophagy-related protein 2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ATG2 PE=3 SV=2) HSP 1 Score: 51.6026 bits (122), Expect = 3.853e-7 Identity = 30/97 (30.93%), Postives = 46/97 (47.42%), Query Frame = -2 Query: 7 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 297 S + + + + +YD + WK YD PRE L + VRP EE + + +LP+RL + Q LDF+ FFG K ++ T+S Sbjct: 1701 SLIRVHIRDLDVYDHVPTSTWKR-FAMYDEDHGPREMGVPMVDLKVRIVRPVLDVTAEEIVMFVNVLPLRLHVDQDALDFITRFFGFKDDTIKTTSS 1796
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_ASPCL (Autophagy-related protein 2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=atg2 PE=3 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 7.410e-7 Identity = 29/85 (34.12%), Postives = 40/85 (47.06%), Query Frame = -2 Query: 43 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFF 297 S L + V + ++D + WK Y RES + L++ VRP P E L+ LLP+RL + Q LDFL FF Sbjct: 1755 SSLDVRVRDLEIFDHVPTSTWKKFATYMQEAGE-RESGASMVHLEILTVRPVPELAASEIVLKATLLPLRLHVDQDALDFLCRFF 1838
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_NEUCR (Autophagy-related protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=apg-2 PE=3 SV=2) HSP 1 Score: 50.447 bits (119), Expect = 7.864e-7 Identity = 25/87 (28.74%), Postives = 45/87 (51.72%), Query Frame = -2 Query: 43 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFF 303 +++ + + +H+ ++D + WK YD RE S L++ V+P P P E +++ +LP+RL + Q LDF+ FF Sbjct: 1654 TINTIDVRIHDLDVFDHIRTSTWKK-FAMYDIDAGERELSKHMVHLEVLNVKPVPDLPATELVVKVNILPLRLHVDQDALDFITRFF 1739 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010449 ID=g.arboreum_cottongen_reftransV1_0010449; Name=g.arboreum_cottongen_reftransV1_0010449; organism=Gossypium arboreum; type=contig; length=304bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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