g.arboreum_cottongen_reftransV1_0010449, g.arboreum_cottongen_reftransV1_0010449 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010449
Unique Nameg.arboreum_cottongen_reftransV1_0010449
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0010449:1..304 .
Chr5:54444230..54445249 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: D7TPK3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00600 PE=4 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.791e-45
Identity = 81/101 (80.20%), Postives = 88/101 (87.13%), Query Frame = -2
Query:    1 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS-CH 300
            VSKLSL + +FHLYD S DAPWKLVL YY SKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIA+LPI L LHQ QLDFL+SFFG K+ S+DQ+ S CH
Sbjct: 1532 VSKLSLFIKDFHLYDNSRDAPWKLVLGYYHSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIAVLPILLHLHQGQLDFLVSFFGGKNQSVDQSPSHCH 1632          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: M5W270_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000068mg PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-43
Identity = 77/100 (77.00%), Postives = 88/100 (88.00%), Query Frame = -2
Query:    4 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSC 303
            SVSKLSLS+ +F+LYD+S DAPWKLVL YY SKD PR+SSSKAFKLDLE+VRPDP TPLEEYRLR+ALLP+ L LHQ QLDFLISFFG KS+S+DQ+  C
Sbjct: 1577 SVSKLSLSIQDFYLYDRSKDAPWKLVLGYYHSKDRPRKSSSKAFKLDLESVRPDPLTPLEEYRLRVALLPMLLHLHQCQLDFLISFFGAKSSSIDQSPGC 1676          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: U5GJ18_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s148902g PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.399e-40
Identity = 73/97 (75.26%), Postives = 79/97 (81.44%), Query Frame = -2
Query:   10 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTT 300
             SKL LSV +FHLYD S  APWK +L YY SKDHPRES+SKAFKLDLEAVRPDP  PLEEYRLRIA LP+ L LHQSQLDFLISFFG KS S  Q++
Sbjct:  157 ASKLCLSVQDFHLYDGSKTAPWKRILGYYHSKDHPRESTSKAFKLDLEAVRPDPLIPLEEYRLRIAFLPVLLHLHQSQLDFLISFFGPKSLSAGQSS 253          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: K7K841_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.956e-39
Identity = 70/95 (73.68%), Postives = 81/95 (85.26%), Query Frame = -2
Query:   16 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQ 300
            VSK+S+SV +F LYD+S DAPWKLVL YY SK HPRES S+AFKLDLEAVRPDP TPLEEYRL +A+LP+ L LHQSQLDFL++FFG K+T  DQ
Sbjct: 1571 VSKMSVSVQDFFLYDRSQDAPWKLVLGYYHSKGHPRESYSRAFKLDLEAVRPDPLTPLEEYRLNVAILPMLLHLHQSQLDFLVNFFGRKNTLKDQ 1665          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0A0LAA0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207330 PE=4 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 9.422e-39
Identity = 66/88 (75.00%), Postives = 78/88 (88.64%), Query Frame = -2
Query:   37 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGE 300
            +S+LSLS+ +FHLYD S DAPWKLVL YY+SK+HPR+SSSKAFKLDLEA+RPDPS PLEEYRL I +LP+ L LHQ QLDFL++FFGE
Sbjct: 1538 ISRLSLSIQDFHLYDSSVDAPWKLVLGYYNSKNHPRKSSSKAFKLDLEAIRPDPSIPLEEYRLCIGILPMLLHLHQCQLDFLVNFFGE 1625          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: G7JLA6_MEDTR (Autophagy protein OS=Medicago truncatula GN=MTR_4g086370 PE=4 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.399e-38
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = -2
Query:    1 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQ-TTSCH 300
            VSK+SLSV +F+LYD+S +APW LVL YY SK HPRES SKAFKLDLEAVRPDP TPLEEYRL +A LP+ L LHQ QLDFL+ FFG K++S DQ   +CH
Sbjct: 1571 VSKMSLSVQDFYLYDRSQNAPWILVLGYYHSKGHPRESYSKAFKLDLEAVRPDPLTPLEEYRLNVAFLPMLLHLHQCQLDFLVDFFGRKNSSNDQFPNNCH 1671          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0B2RWS5_GLYSO (Autophagy-related protein 2 OS=Glycine soja GN=glysoja_034366 PE=4 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.467e-38
Identity = 69/95 (72.63%), Postives = 80/95 (84.21%), Query Frame = -2
Query:   16 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQ 300
            VSK+S+SV +F LYD+S DAPWKLVL YY SK HPRES S+AFK DLEAVRPDP TPLEEYRL +A+LP+ L LHQSQLDFL++FFG K+T  DQ
Sbjct: 1571 VSKMSVSVQDFFLYDRSQDAPWKLVLGYYHSKGHPRESYSRAFKSDLEAVRPDPLTPLEEYRLNVAILPMLLHLHQSQLDFLVNFFGRKNTLKDQ 1665          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: M9Q2N2_TOBAC (Autophagy-related protein 2 (Fragment) OS=Nicotiana tabacum GN=ATG2 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.770e-38
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = -2
Query:    7 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 300
            VS+ S++VH+F + D S  APWKLVL YY SK   RESSSKAFKLDLEAVRPDP+ PLEEYRLRIALLP+RL LHQ+QLDFLISFFG   +++  + S
Sbjct:   37 VSRQSITVHDFCVKDNSNAAPWKLVLGYYQSKGCLRESSSKAFKLDLEAVRPDPAIPLEEYRLRIALLPMRLHLHQNQLDFLISFFGGTKSAVTPSES 134          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0B2R948_GLYSO (Autophagy-related protein 2 OS=Glycine soja GN=glysoja_020364 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.018e-38
Identity = 69/95 (72.63%), Postives = 79/95 (83.16%), Query Frame = -2
Query:   16 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQ 300
            VSK+S+SV +  LYD+S DAPWKLVL YY SK HPRES S+AFKLDLEAVRPDP TPLEEYRL +A+LP+ L LHQSQLDFL++FFG KS   DQ
Sbjct: 1570 VSKMSVSVQDLFLYDRSQDAPWKLVLGYYHSKGHPRESYSRAFKLDLEAVRPDPLTPLEEYRLNVAILPMLLHLHQSQLDFLVNFFGRKSILKDQ 1664          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: K7L2Z3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.218e-38
Identity = 69/95 (72.63%), Postives = 79/95 (83.16%), Query Frame = -2
Query:   16 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQ 300
            VSK+S+SV +  LYD+S DAPWKLVL YY SK HPRES S+AFKLDLEAVRPDP TPLEEYRL +A+LP+ L LHQSQLDFL++FFG KS   DQ
Sbjct: 1570 VSKMSVSVQDLFLYDRSQDAPWKLVLGYYHSKGHPRESYSRAFKLDLEAVRPDPLTPLEEYRLNVAILPMLLHLHQSQLDFLVNFFGRKSILKDQ 1664          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_DEBHA (Autophagy-related protein 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ATG2 PE=3 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 1.453e-7
Identity = 29/93 (31.18%), Postives = 45/93 (48.39%), Query Frame = -2
Query:   19 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLD 297
            + + L + +  +YD   ++ W   L Y +S    RE  +   K  +  VRP+P     E  + I++LPIRL + Q  LDF I FF  K    +
Sbjct: 1406 NSIDLRIEDIDIYDNIPNSTWNKFLSYMNSLGE-REIGTSMLKASITNVRPNPELCSTEAMIDISILPIRLHVDQDALDFFIRFFDFKDKRFE 1497          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_MAGO7 (Autophagy-related protein 2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ATG2 PE=3 SV=2)

HSP 1 Score: 51.6026 bits (122), Expect = 3.853e-7
Identity = 30/97 (30.93%), Postives = 46/97 (47.42%), Query Frame = -2
Query:    7 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 297
            S + + + +  +YD    + WK     YD    PRE       L +  VRP      EE  + + +LP+RL + Q  LDF+  FFG K  ++  T+S
Sbjct: 1701 SLIRVHIRDLDVYDHVPTSTWKR-FAMYDEDHGPREMGVPMVDLKVRIVRPVLDVTAEEIVMFVNVLPLRLHVDQDALDFITRFFGFKDDTIKTTSS 1796          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_ASPCL (Autophagy-related protein 2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=atg2 PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 7.410e-7
Identity = 29/85 (34.12%), Postives = 40/85 (47.06%), Query Frame = -2
Query:   43 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFF 297
            S L + V +  ++D    + WK    Y       RES +    L++  VRP P     E  L+  LLP+RL + Q  LDFL  FF
Sbjct: 1755 SSLDVRVRDLEIFDHVPTSTWKKFATYMQEAGE-RESGASMVHLEILTVRPVPELAASEIVLKATLLPLRLHVDQDALDFLCRFF 1838          
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_NEUCR (Autophagy-related protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=apg-2 PE=3 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 7.864e-7
Identity = 25/87 (28.74%), Postives = 45/87 (51.72%), Query Frame = -2
Query:   43 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFF 303
            +++ + + +H+  ++D    + WK     YD     RE S     L++  V+P P  P  E  +++ +LP+RL + Q  LDF+  FF
Sbjct: 1654 TINTIDVRIHDLDVFDHIRTSTWKK-FAMYDIDAGERELSKHMVHLEVLNVKPVPDLPATELVVKVNILPLRLHVDQDALDFITRFF 1739          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7TPK3_VITVI4.791e-4580.20Putative uncharacterized protein OS=Vitis vinifera... [more]
M5W270_PRUPE1.027e-4377.00Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
U5GJ18_POPTR1.399e-4075.26Uncharacterized protein (Fragment) OS=Populus tric... [more]
K7K841_SOYBN3.956e-3973.68Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0A0LAA0_CUCSA9.422e-3975.00Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
G7JLA6_MEDTR1.399e-3870.30Autophagy protein OS=Medicago truncatula GN=MTR_4g... [more]
A0A0B2RWS5_GLYSO3.467e-3872.63Autophagy-related protein 2 OS=Glycine soja GN=gly... [more]
M9Q2N2_TOBAC5.770e-3868.37Autophagy-related protein 2 (Fragment) OS=Nicotian... [more]
A0A0B2R948_GLYSO7.018e-3872.63Autophagy-related protein 2 OS=Glycine soja GN=gly... [more]
K7L2Z3_SOYBN7.218e-3872.63Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ATG2_DEBHA1.453e-731.18Autophagy-related protein 2 OS=Debaryomyces hansen... [more]
ATG2_MAGO73.853e-730.93Autophagy-related protein 2 OS=Magnaporthe oryzae ... [more]
ATG2_ASPCL7.410e-734.12Autophagy-related protein 2 OS=Aspergillus clavatu... [more]
ATG2_NEUCR7.864e-728.74Autophagy-related protein 2 OS=Neurospora crassa (... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026849Autophagy-related protein 2PANTHERPTHR13190FAMILY NOT NAMEDcoord: 1..75
NoneNo IPR availablePANTHERPTHR13190:SF1AUTOPHAGY-SPECIFIC GENE 2, ISOFORM Acoord: 1..75

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010449 ID=g.arboreum_cottongen_reftransV1_0010449; Name=g.arboreum_cottongen_reftransV1_0010449; organism=Gossypium arboreum; type=contig; length=304bp
ATGACAGCTAGTAGTCTGATCAAGTGAAGTGCTTTTTTCACCAAAAAAGC
TGATGAGAAAATCAAGTTGGCTTTGATGAAGCTGTAACCGGATAGGAAGG
AGGGCAATGCGTAACCGGTATTCCTCAAGAGGTGTAGAAGGATCTGGTCT
TACAGCCTCTAGGTCCAGTTTGAATGCCTTTGAAGAGGATTCCCTAGGAT
GATCTTTTGAATCGTAGTATCTTAGCACCAGTTTCCAAGGTGCATCTGTG
CTCTTGTCATAGAGATGAAACTCATGGACTGAAAGAGAAAGTTTGGACAC
AGAT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR026849ATG2
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy