g.arboreum_cottongen_reftransV1_0002778, g.arboreum_cottongen_reftransV1_0002778 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: M1BLG8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018584 PE=4 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 4.737e-77 Identity = 110/156 (70.51%), Postives = 132/156 (84.62%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 DILR +GVMYRHLVCK+NLT++KD SVH RN+AL+HIETH LDGIVYFA+ NIYS+D+FEQMR I +FGTW VA+ + + +L+GP+CNG+QVIGWH NG++KRFQRF AE+SGFAF STILWDPK W+RPTLEPIRQLD VE G S+FIE Sbjct: 240 DILRGAGVMYRHLVCKRNLTEVKDNSVHLRNMALTHIETHRLDGIVYFADNSNIYSLDVFEQMRQISRFGTWVVARLAENNRKVILQGPICNGSQVIGWHPNGMAKRFQRFDAEISGFAFISTILWDPKRWNRPTLEPIRQLDIVEAGIQVSTFIE 395
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0B2PIP0_GLYSO (Putative beta-1,4-xylosyltransferase IRX9H OS=Glycine soja GN=glysoja_021862 PE=4 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 8.418e-77 Identity = 105/156 (67.31%), Postives = 129/156 (82.69%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 ++LR++GVMYRHLVC KNLTD+KDR VHQRN AL HIE H LDGIVYFA++ N+YS++LF+ +R I +FGTWPVA K++A+LEGPVCN +QVIGWH N SKR +RFH +MSGFAFNSTILWDPK W RP+ PIRQLDTV++GF ++FIE Sbjct: 10 EVLRKTGVMYRHLVCNKNLTDVKDRGVHQRNTALEHIEHHRLDGIVYFADDDNVYSLELFDALRDISRFGTWPVAMLVPSKNKAILEGPVCNASQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPSSNPIRQLDTVKEGFQETTFIE 165
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A059BKY1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00463 PE=4 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 4.707e-76 Identity = 112/156 (71.79%), Postives = 129/156 (82.69%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 DILR+SGVMYRHLVC KN TDIKDR VHQRN AL HIE H LDGIVYFA++ NIYS++LF +R IR+FGTWPVA KS+A+LEGPVCNG+QVIGWH N SKR +RFH +MSGFAFNSTILWDPK W R TL PIRQLDTV++GF ++FI+ Sbjct: 202 DILRKSGVMYRHLVCTKNSTDIKDRGVHQRNTALEHIERHKLDGIVYFADDDNIYSLELFHSLRQIRRFGTWPVAMLAQSKSKAILEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRLTLHPIRQLDTVKEGFQETTFIQ 357
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: R0ILI6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10009365mg PE=4 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 9.275e-76 Identity = 107/156 (68.59%), Postives = 129/156 (82.69%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 +ILR++GVMYRHLVCK+N+T IKDR VHQRN AL HIE H LDGIVYFA++ NIYS++LF+ +R IR+FGTWPVA K++A+LEGPVCNG+QVIGWH N SKR +RFH +MSGFAFNSTILWDPK W RP P RQLDTV++GF ++FIE Sbjct: 190 EILRKTGVMYRHLVCKRNMTSIKDRGVHQRNTALEHIELHKLDGIVYFADDDNIYSLELFQSLRQIRRFGTWPVAMLAPSKNKAILEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPFTHPTRQLDTVKEGFQETTFIE 345
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A068TXC8_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_6 OS=Coffea canephora GN=GSCOC_T00034436001 PE=4 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 1.166e-75 Identity = 108/156 (69.23%), Postives = 130/156 (83.33%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 DI+R++GVMYRHLV KKNLTDIKDR VHQRN AL HIE H LDGIVYFA++ NIYS++LFE +R I +FGTWPVA K++A++EGPVCNG++VIGWH N SKR +RFH +MSGFAFNS ILWDPK W RPT +PIRQLDTV++GF ++FIE Sbjct: 180 DIVRKTGVMYRHLVTKKNLTDIKDRGVHQRNTALEHIERHKLDGIVYFADDDNIYSLELFESLRAISRFGTWPVAMLAQSKNKAIMEGPVCNGSRVIGWHTNEKSKRLRRFHVDMSGFAFNSAILWDPKRWKRPTSDPIRQLDTVKEGFQETTFIE 335
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: IRX14_ARATH (Probable beta-1,4-xylosyltransferase IRX14 OS=Arabidopsis thaliana GN=IRX14 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 1.807e-9 Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = -3 Query: 89 ILRRSGVMYRHLVCKKNLTDI-KDRS---VHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVA--KQTSDKSRAVL---------------------EGPVCNGT-QVIGWHL------NGLSKRFQRFHA-------EMSGFAFNSTILWD 466 I+ +SG+ H+ + + + +DRS V R AL + LDGIV FA++ N++S++LF+++++++ FGT V + + VL +GP CN T Q+IGWH+ G S + A E SGF NS +LW+ Sbjct: 209 IIAKSGLRTIHVGIDQRMPNTWEDRSKLEVFMRLQALRVVREEKLDGIVMFADDSNMHSMELFDEIQNVKWFGTVSVGILAHSGNAEEMVLSMEKRKEMEKEEEEESSSLPVQGPACNSTDQLIGWHIFNTLPYAGKSAVYIDDVAAVLPQKLEWSGFVLNSRLLWE 375
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: GT43_ORYSJ (Probable glucuronosyltransferase Os04g0650300 OS=Oryza sativa subsp. japonica GN=Os04g0650300 PE=3 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.403e-8 Identity = 45/169 (26.63%), Postives = 77/169 (45.56%), Query Frame = -3 Query: 8 ILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDK--SRAVLEGPVCNGT-QVIGWHLNG------------LSKRFQRFHAEMSGFAFNSTILWD-PKPWHRPTLEPIRQLDTVEDGFHASSF 466 +L RS + + H+ + T R AL I +DG+V FA+E++I +LF++ + ++ G PV D+ S L+ P C+ +++G+H++ LS R E +GF N+ LW+ RP E + +D ++DG AS Sbjct: 219 VLSRSNLNFLHITGPDSSTS------RLRMHALREIRKRKMDGVVVFADENSILRTELFDEAQKVKSVGAVPVGVLGEDEGTSETFLQAPSCDAEGKLVGYHVSEETMLPANRGDMLLSSRL-----EWAGFVVNAQALWEGGGAASRP--EWVSDIDAIDDGAAASPL 374
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA3_MOUSE (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Mus musculus GN=B3gat3 PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.404e-8 Identity = 42/146 (28.77%), Postives = 64/146 (43.84%), Query Frame = -3 Query: 95 ILRRSGVMYRHLVC----KKNLTD-----IKDRSVHQRNVALSHIE-------------THHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTIL 466 +L SG+++ HL + L + ++ R V QRN AL + G+VYFA++ N YS +LF++MR R WPV + EGP +V+G+H R F +M+GFA +L Sbjct: 124 LLAASGLLFTHLAVLTPKAQRLREGEPGWVRPRGVEQRNKALDWLRGKGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFKEMRWTRGVSVWPVGLVGGLR----FEGPQVQDGRVVGFHTAWEPNR--PFPLDMAGFAVALPLL 263
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA3_CRIGR (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Cricetulus griseus GN=B3GAT3 PE=2 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 1.676e-8 Identity = 42/146 (28.77%), Postives = 64/146 (43.84%), Query Frame = -3 Query: 95 ILRRSGVMYRHLVC----KKNLTD-----IKDRSVHQRNVALSHIETHH-------------LDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTIL 466 +L SG+++ HL + L + ++ R V QRN AL + G+VYFA++ N YS +LF++MR R WPV + EGP +V+G+H R F +M+GFA +L Sbjct: 124 LLAASGLLFTHLAVLTPKAQRLREGEPGWVRPRGVEQRNKALDWLRGKGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFKEMRWTRGVSVWPVGLVGGLR----FEGPRVQDGRVVGFHTAWEPNR--PFPLDMAGFAVALPLL 263
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: IX14H_ARATH (Probable beta-1,4-xylosyltransferase IRX14H OS=Arabidopsis thaliana GN=IRX14H PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.773e-8 Identity = 37/150 (24.67%), Postives = 69/150 (46.00%), Query Frame = -3 Query: 23 ALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVA-------------------KQTSDKSRAVLEGPVCNGTQ-VIGWHL---NGLSKRFQRF----------HAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGF 373 AL + LDGIV FA++ N++S++LF++++ ++ FG V + +K ++GP CN ++ ++GWH+ +K+ + E SGF NS +LW +P ++ L ++DG+ Sbjct: 236 ALRVVREKKLDGIVMFADDSNMHSMELFDEIQTVKWFGALSVGILAHSGNADELSSILKNEQGKNKEKPSMPIQGPSCNSSEKLVGWHIFNTQPYAKKTAVYIDEKAPVMPSKMEWSGFVLNSRLLWKESLDDKPAW--VKDLSLLDDGY 383 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002778 ID=g.arboreum_cottongen_reftransV1_0002778; Name=g.arboreum_cottongen_reftransV1_0002778; organism=Gossypium arboreum; type=contig; length=471bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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