g.arboreum_cottongen_reftransV1_0002778, g.arboreum_cottongen_reftransV1_0002778 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0002778
Unique Nameg.arboreum_cottongen_reftransV1_0002778
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length471
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr1chromosomeg.arboreum_cottongen_reftransV1_0002778:1..471 .
Chr1:59000790..59001730 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: M1BLG8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018584 PE=4 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.737e-77
Identity = 110/156 (70.51%), Postives = 132/156 (84.62%), Query Frame = -3
Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILR +GVMYRHLVCK+NLT++KD SVH RN+AL+HIETH LDGIVYFA+  NIYS+D+FEQMR I +FGTW VA+   +  + +L+GP+CNG+QVIGWH NG++KRFQRF AE+SGFAF STILWDPK W+RPTLEPIRQLD VE G   S+FIE
Sbjct:  240 DILRGAGVMYRHLVCKRNLTEVKDNSVHLRNMALTHIETHRLDGIVYFADNSNIYSLDVFEQMRQISRFGTWVVARLAENNRKVILQGPICNGSQVIGWHPNGMAKRFQRFDAEISGFAFISTILWDPKRWNRPTLEPIRQLDIVEAGIQVSTFIE 395          
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0B2PIP0_GLYSO (Putative beta-1,4-xylosyltransferase IRX9H OS=Glycine soja GN=glysoja_021862 PE=4 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 8.418e-77
Identity = 105/156 (67.31%), Postives = 129/156 (82.69%), Query Frame = -3
Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            ++LR++GVMYRHLVC KNLTD+KDR VHQRN AL HIE H LDGIVYFA++ N+YS++LF+ +R I +FGTWPVA     K++A+LEGPVCN +QVIGWH N  SKR +RFH +MSGFAFNSTILWDPK W RP+  PIRQLDTV++GF  ++FIE
Sbjct:   10 EVLRKTGVMYRHLVCNKNLTDVKDRGVHQRNTALEHIEHHRLDGIVYFADDDNVYSLELFDALRDISRFGTWPVAMLVPSKNKAILEGPVCNASQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPSSNPIRQLDTVKEGFQETTFIE 165          
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A059BKY1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00463 PE=4 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 4.707e-76
Identity = 112/156 (71.79%), Postives = 129/156 (82.69%), Query Frame = -3
Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILR+SGVMYRHLVC KN TDIKDR VHQRN AL HIE H LDGIVYFA++ NIYS++LF  +R IR+FGTWPVA     KS+A+LEGPVCNG+QVIGWH N  SKR +RFH +MSGFAFNSTILWDPK W R TL PIRQLDTV++GF  ++FI+
Sbjct:  202 DILRKSGVMYRHLVCTKNSTDIKDRGVHQRNTALEHIERHKLDGIVYFADDDNIYSLELFHSLRQIRRFGTWPVAMLAQSKSKAILEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRLTLHPIRQLDTVKEGFQETTFIQ 357          
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: R0ILI6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10009365mg PE=4 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 9.275e-76
Identity = 107/156 (68.59%), Postives = 129/156 (82.69%), Query Frame = -3
Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            +ILR++GVMYRHLVCK+N+T IKDR VHQRN AL HIE H LDGIVYFA++ NIYS++LF+ +R IR+FGTWPVA     K++A+LEGPVCNG+QVIGWH N  SKR +RFH +MSGFAFNSTILWDPK W RP   P RQLDTV++GF  ++FIE
Sbjct:  190 EILRKTGVMYRHLVCKRNMTSIKDRGVHQRNTALEHIELHKLDGIVYFADDDNIYSLELFQSLRQIRRFGTWPVAMLAPSKNKAILEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPFTHPTRQLDTVKEGFQETTFIE 345          
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A068TXC8_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_6 OS=Coffea canephora GN=GSCOC_T00034436001 PE=4 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.166e-75
Identity = 108/156 (69.23%), Postives = 130/156 (83.33%), Query Frame = -3
Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DI+R++GVMYRHLV KKNLTDIKDR VHQRN AL HIE H LDGIVYFA++ NIYS++LFE +R I +FGTWPVA     K++A++EGPVCNG++VIGWH N  SKR +RFH +MSGFAFNS ILWDPK W RPT +PIRQLDTV++GF  ++FIE
Sbjct:  180 DIVRKTGVMYRHLVTKKNLTDIKDRGVHQRNTALEHIERHKLDGIVYFADDDNIYSLELFESLRAISRFGTWPVAMLAQSKNKAIMEGPVCNGSRVIGWHTNEKSKRLRRFHVDMSGFAFNSAILWDPKRWKRPTSDPIRQLDTVKEGFQETTFIE 335          
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: IRX14_ARATH (Probable beta-1,4-xylosyltransferase IRX14 OS=Arabidopsis thaliana GN=IRX14 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.807e-9
Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = -3
Query:   89 ILRRSGVMYRHLVCKKNLTDI-KDRS---VHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVA--KQTSDKSRAVL---------------------EGPVCNGT-QVIGWHL------NGLSKRFQRFHA-------EMSGFAFNSTILWD 466
            I+ +SG+   H+   + + +  +DRS   V  R  AL  +    LDGIV FA++ N++S++LF+++++++ FGT  V     + +    VL                     +GP CN T Q+IGWH+       G S  +    A       E SGF  NS +LW+
Sbjct:  209 IIAKSGLRTIHVGIDQRMPNTWEDRSKLEVFMRLQALRVVREEKLDGIVMFADDSNMHSMELFDEIQNVKWFGTVSVGILAHSGNAEEMVLSMEKRKEMEKEEEEESSSLPVQGPACNSTDQLIGWHIFNTLPYAGKSAVYIDDVAAVLPQKLEWSGFVLNSRLLWE 375          
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: GT43_ORYSJ (Probable glucuronosyltransferase Os04g0650300 OS=Oryza sativa subsp. japonica GN=Os04g0650300 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.403e-8
Identity = 45/169 (26.63%), Postives = 77/169 (45.56%), Query Frame = -3
Query:    8 ILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDK--SRAVLEGPVCNGT-QVIGWHLNG------------LSKRFQRFHAEMSGFAFNSTILWD-PKPWHRPTLEPIRQLDTVEDGFHASSF 466
            +L RS + + H+    + T         R  AL  I    +DG+V FA+E++I   +LF++ + ++  G  PV     D+  S   L+ P C+   +++G+H++             LS R      E +GF  N+  LW+      RP  E +  +D ++DG  AS  
Sbjct:  219 VLSRSNLNFLHITGPDSSTS------RLRMHALREIRKRKMDGVVVFADENSILRTELFDEAQKVKSVGAVPVGVLGEDEGTSETFLQAPSCDAEGKLVGYHVSEETMLPANRGDMLLSSRL-----EWAGFVVNAQALWEGGGAASRP--EWVSDIDAIDDGAAASPL 374          
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA3_MOUSE (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Mus musculus GN=B3gat3 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.404e-8
Identity = 42/146 (28.77%), Postives = 64/146 (43.84%), Query Frame = -3
Query:   95 ILRRSGVMYRHLVC----KKNLTD-----IKDRSVHQRNVALSHIE-------------THHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTIL 466
            +L  SG+++ HL       + L +     ++ R V QRN AL  +                   G+VYFA++ N YS +LF++MR  R    WPV      +     EGP     +V+G+H      R   F  +M+GFA    +L
Sbjct:  124 LLAASGLLFTHLAVLTPKAQRLREGEPGWVRPRGVEQRNKALDWLRGKGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFKEMRWTRGVSVWPVGLVGGLR----FEGPQVQDGRVVGFHTAWEPNR--PFPLDMAGFAVALPLL 263          
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA3_CRIGR (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Cricetulus griseus GN=B3GAT3 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.676e-8
Identity = 42/146 (28.77%), Postives = 64/146 (43.84%), Query Frame = -3
Query:   95 ILRRSGVMYRHLVC----KKNLTD-----IKDRSVHQRNVALSHIETHH-------------LDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTIL 466
            +L  SG+++ HL       + L +     ++ R V QRN AL  +                   G+VYFA++ N YS +LF++MR  R    WPV      +     EGP     +V+G+H      R   F  +M+GFA    +L
Sbjct:  124 LLAASGLLFTHLAVLTPKAQRLREGEPGWVRPRGVEQRNKALDWLRGKGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFKEMRWTRGVSVWPVGLVGGLR----FEGPRVQDGRVVGFHTAWEPNR--PFPLDMAGFAVALPLL 263          
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: IX14H_ARATH (Probable beta-1,4-xylosyltransferase IRX14H OS=Arabidopsis thaliana GN=IRX14H PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.773e-8
Identity = 37/150 (24.67%), Postives = 69/150 (46.00%), Query Frame = -3
Query:   23 ALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVA-------------------KQTSDKSRAVLEGPVCNGTQ-VIGWHL---NGLSKRFQRF----------HAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGF 373
            AL  +    LDGIV FA++ N++S++LF++++ ++ FG   V                     +  +K    ++GP CN ++ ++GWH+      +K+   +            E SGF  NS +LW      +P    ++ L  ++DG+
Sbjct:  236 ALRVVREKKLDGIVMFADDSNMHSMELFDEIQTVKWFGALSVGILAHSGNADELSSILKNEQGKNKEKPSMPIQGPSCNSSEKLVGWHIFNTQPYAKKTAVYIDEKAPVMPSKMEWSGFVLNSRLLWKESLDDKPAW--VKDLSLLDDGY 383          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M1BLG8_SOLTU4.737e-7770.51Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A0A0B2PIP0_GLYSO8.418e-7767.31Putative beta-1,4-xylosyltransferase IRX9H OS=Glyc... [more]
A0A059BKY1_EUCGR4.707e-7671.79Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
R0ILI6_9BRAS9.275e-7668.59Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
A0A068TXC8_COFCA1.166e-7569.23Coffea canephora DH200=94 genomic scaffold, scaffo... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
IRX14_ARATH1.807e-929.34Probable beta-1,4-xylosyltransferase IRX14 OS=Arab... [more]
GT43_ORYSJ1.403e-826.63Probable glucuronosyltransferase Os04g0650300 OS=O... [more]
B3GA3_MOUSE1.404e-828.77Galactosylgalactosylxylosylprotein 3-beta-glucuron... [more]
B3GA3_CRIGR1.676e-828.77Galactosylgalactosylxylosylprotein 3-beta-glucuron... [more]
IX14H_ARATH1.773e-824.67Probable beta-1,4-xylosyltransferase IRX14H OS=Ara... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029044Nucleotide-diphospho-sugar transferasesGENE3D3.90.550.10coord: 1..148
e-value: 5.4E-46
score: 156.2
IPR029044Nucleotide-diphospho-sugar transferasesSUPERFAMILY53448Nucleotide-diphospho-sugar transferasescoord: 1..146
IPR005027Glycosyl transferase, family 43PFAMPF03360Glyco_transf_43coord: 1..147
e-value: 1.5E-41
score: 142.3
IPR005027Glycosyl transferase, family 43PANTHERPTHR10896GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASEcoord: 1..148
NoneNo IPR availablePANTHERPTHR10896:SF27SUBFAMILY NOT NAMEDcoord: 1..148

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0002778 ID=g.arboreum_cottongen_reftransV1_0002778; Name=g.arboreum_cottongen_reftransV1_0002778; organism=Gossypium arboreum; type=contig; length=471bp
GTTCAATAAATGAGCTTGCATGGAAACCATCTTCGACCGTGTCAAGCTGT
CTTATCGGTTCAAGAGTAGGTCGGTGCCATGGCTTTGGATCCCATAGTAT
GGTACTGTTGAAGGCAAACCCTGACATTTCAGCATGGAATCTTTGGAATC
GCTTGCTTAATCCATTTAGGTGCCATCCAATGACTTGAGTTCCATTACAA
ACAGGGCCTTCCAATACAGCTCTACTTTTGTCCGATGTTTGTTTGGCCAC
AGGCCAAGTCCCAAACTGCCTAATATGCCTCATTTGCTCAAAGAGATCAA
TTGAGTAGATGTTATGTTCATTGGCAAAGTAGACAATTCCATCAAGATGA
TGAGTTTCGATGTGAGATAGTGCCACATTTCTTTGGTGAACACTTCTGTC
TTTTATATCAGTCAGATTTTTCTTGCAGACAAGATGCCTATACATAACAC
CGCTCCTTCTTAGGATGTCAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
IPR005027Glyco_trans_43
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0015018galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity