g.arboreum_cottongen_reftransV1_0002778, g.arboreum_cottongen_reftransV1_0002778 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0002778
Unique Name	g.arboreum_cottongen_reftransV1_0002778
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	471

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr1	chromosome	g.arboreum_cottongen_reftransV1_0002778:1..471 . Chr1:59000790..59001730 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: M1BLG8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018584 PE=4 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.737e-77
Identity = 110/156 (70.51%), Postives = 132/156 (84.62%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILR +GVMYRHLVCK+NLT++KD SVH RN+AL+HIETH LDGIVYFA+  NIYS+D+FEQMR I +FGTW VA+   +  + +L+GP+CNG+QVIGWH NG++KRFQRF AE+SGFAF STILWDPK W+RPTLEPIRQLD VE G   S+FIE
Sbjct:  240 DILRGAGVMYRHLVCKRNLTEVKDNSVHLRNMALTHIETHRLDGIVYFADNSNIYSLDVFEQMRQISRFGTWVVARLAENNRKVILQGPICNGSQVIGWHPNGMAKRFQRFDAEISGFAFISTILWDPKRWNRPTLEPIRQLDIVEAGIQVSTFIE 395

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0B2PIP0_GLYSO (Putative beta-1,4-xylosyltransferase IRX9H OS=Glycine soja GN=glysoja_021862 PE=4 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 8.418e-77
Identity = 105/156 (67.31%), Postives = 129/156 (82.69%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            ++LR++GVMYRHLVC KNLTD+KDR VHQRN AL HIE H LDGIVYFA++ N+YS++LF+ +R I +FGTWPVA     K++A+LEGPVCN +QVIGWH N  SKR +RFH +MSGFAFNSTILWDPK W RP+  PIRQLDTV++GF  ++FIE
Sbjct:   10 EVLRKTGVMYRHLVCNKNLTDVKDRGVHQRNTALEHIEHHRLDGIVYFADDDNVYSLELFDALRDISRFGTWPVAMLVPSKNKAILEGPVCNASQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPSSNPIRQLDTVKEGFQETTFIE 165

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A059BKY1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00463 PE=4 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 4.707e-76
Identity = 112/156 (71.79%), Postives = 129/156 (82.69%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILR+SGVMYRHLVC KN TDIKDR VHQRN AL HIE H LDGIVYFA++ NIYS++LF  +R IR+FGTWPVA     KS+A+LEGPVCNG+QVIGWH N  SKR +RFH +MSGFAFNSTILWDPK W R TL PIRQLDTV++GF  ++FI+
Sbjct:  202 DILRKSGVMYRHLVCTKNSTDIKDRGVHQRNTALEHIERHKLDGIVYFADDDNIYSLELFHSLRQIRRFGTWPVAMLAQSKSKAILEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRLTLHPIRQLDTVKEGFQETTFIQ 357

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: R0ILI6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10009365mg PE=4 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 9.275e-76
Identity = 107/156 (68.59%), Postives = 129/156 (82.69%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            +ILR++GVMYRHLVCK+N+T IKDR VHQRN AL HIE H LDGIVYFA++ NIYS++LF+ +R IR+FGTWPVA     K++A+LEGPVCNG+QVIGWH N  SKR +RFH +MSGFAFNSTILWDPK W RP   P RQLDTV++GF  ++FIE
Sbjct:  190 EILRKTGVMYRHLVCKRNMTSIKDRGVHQRNTALEHIELHKLDGIVYFADDDNIYSLELFQSLRQIRRFGTWPVAMLAPSKNKAILEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPFTHPTRQLDTVKEGFQETTFIE 345

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A068TXC8_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_6 OS=Coffea canephora GN=GSCOC_T00034436001 PE=4 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.166e-75
Identity = 108/156 (69.23%), Postives = 130/156 (83.33%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DI+R++GVMYRHLV KKNLTDIKDR VHQRN AL HIE H LDGIVYFA++ NIYS++LFE +R I +FGTWPVA     K++A++EGPVCNG++VIGWH N  SKR +RFH +MSGFAFNS ILWDPK W RPT +PIRQLDTV++GF  ++FIE
Sbjct:  180 DIVRKTGVMYRHLVTKKNLTDIKDRGVHQRNTALEHIERHKLDGIVYFADDDNIYSLELFESLRAISRFGTWPVAMLAQSKNKAIMEGPVCNGSRVIGWHTNEKSKRLRRFHVDMSGFAFNSAILWDPKRWKRPTSDPIRQLDTVKEGFQETTFIE 335

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3G2P_DROME (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P OS=Drosophila melanogaster GN=GlcAT-P PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.708e-14
Identity = 45/152 (29.61%), Postives = 74/152 (48.68%), Query Frame = -3

Query:   23 LRRSGVMYRHLVCK-----KNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGF 463
            L R GV Y ++V       K     K R V  RN  L ++  H  +G++YFA++ N Y I +FEQMR+I +   WPV   T    +  +  P+    +++G++   +  R  ++  +M+GFA +   L +     RP  +   +    EDGF
Sbjct:  281 LDRIGVPYEYMVAPMPEKYKQTKKAKPRGVSNRNRGLEYLREHATEGVLYFADDDNTYDISIFEQMRYISKVAMWPVGLVT----KTGVSSPIIQAGKLVGYYDGWIGGR--KYPVDMAGFAVSVKFLKE-----RPNAQMPFKPGYEEDGF 421

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA1_CANFA (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 OS=Canis familiaris GN=B3GAT1 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.936e-11
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -3

Query:  107 ILRRSGVMYRHLVCK-----KNLTDIKD----RSVHQRNVALSHI-ETHHLD----GIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGT-QVIGWHLNGLSKRFQRFHAEMSGFAFN 466
            +LR +G+ Y HL  +     K   D +D    R   QRN+AL  + ET   +    G+VYFA++ N YS++LFE+MR  R+   WPVA     +     E P  NG  +V+GW    +    + F  +M+GFA N
Sbjct:  134 LLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLR----YEAPRVNGAGKVVGW--KTVFDPHRPFAIDMAGFAVN 262

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA1_HUMAN (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 OS=Homo sapiens GN=B3GAT1 PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.018e-11
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -3

Query:  107 ILRRSGVMYRHLVCK-----KNLTDIKD----RSVHQRNVALSHI-ETHHLD----GIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGT-QVIGWHLNGLSKRFQRFHAEMSGFAFN 466
            +LR +G+ Y HL  +     K   D +D    R   QRN+AL  + ET   +    G+VYFA++ N YS++LFE+MR  R+   WPVA     +     E P  NG  +V+GW    +    + F  +M+GFA N
Sbjct:  133 LLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLR----YEAPRVNGAGKVVGW--KTVFDPHRPFAIDMAGFAVN 261

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA1_RAT (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 OS=Rattus norvegicus GN=B3gat1 PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.223e-11
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -3

Query:  107 ILRRSGVMYRHLVCK-----KNLTDIKD----RSVHQRNVALSHI-ETHHLD----GIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGT-QVIGWHLNGLSKRFQRFHAEMSGFAFN 466
            +LR +G+ Y HL  +     K   D +D    R   QRN+AL  + ET   +    G+VYFA++ N YS++LFE+MR  R+   WPVA     +     E P  NG  +V+GW    +    + F  +M+GFA N
Sbjct:  133 LLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSTQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLR----YEAPRVNGAGKVVGW--KTVFDPHRPFAIDMAGFAVN 261

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA1_MOUSE (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 OS=Mus musculus GN=B3gat1 PE=2 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.333e-11
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -3

Query:  107 ILRRSGVMYRHLVCK-----KNLTDIKD----RSVHQRNVALSHI-ETHHLD----GIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGT-QVIGWHLNGLSKRFQRFHAEMSGFAFN 466
            +LR +G+ Y HL  +     K   D +D    R   QRN+AL  + ET   +    G+VYFA++ N YS++LFE+MR  R+   WPVA     +     E P  NG  +V+GW    +    + F  +M+GFA N
Sbjct:  133 LLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSTQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLR----YEAPRVNGAGKVVGW--KTVFDPHRPFAIDMAGFAVN 261

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA2_CANFA (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 OS=Canis familiaris GN=B3GAT2 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.016e-10
Identity = 40/136 (29.41%), Postives = 67/136 (49.26%), Query Frame = -3

Query:   83 LRRSGVMYRHL---VCKKNLTDIKDRSVHQRNVALSHIETHHL-----DGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFN-STILWDPK 463
            L R+G+   HL     ++       R+  QRN  L+ +   H       G+++FA++ N YS++LF++MR  R+   WPV      +     E P+    +V+GW+    + R   F  +M+GFA +   IL +PK
Sbjct:  136 LARAGLPSTHLHVPTPRRYKRPGLPRATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRR----YERPLVENGKVVGWYTGWRADR--PFAIDMAGFAVSLQVILSNPK 265

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA2_HUMAN (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 OS=Homo sapiens GN=B3GAT2 PE=1 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 1.127e-10
Identity = 41/137 (29.93%), Postives = 70/137 (51.09%), Query Frame = -3

Query:   29 RSVHQRNVALSHIETHHL-----DGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFN-STILWDPKP-WHRPTLEP-------IRQLDTVED 397
            R+  QRN  L+ +   H       G+++FA++ N YS++LF++MR  R+   WPV      +     E P+    +V+GW+    + R   F  +M+GFA +   IL +PK  + R   +P       ++Q+ TVE+
Sbjct:  155 RATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRR----YERPLVENGKVVGWYTGWRADR--PFAIDMAGFAVSLQVILSNPKAVFKRRGSQPGMQESDFLKQITTVEE 285

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA2_MOUSE (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 OS=Mus musculus GN=B3gat2 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.022e-10
Identity = 35/111 (31.53%), Postives = 57/111 (51.35%), Query Frame = -3

Query:   83 RSVHQRNVALSHIETHHL-----DGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFN-STILWDPK 397
            R+  QRN  L+ +   H       G+++FA++ N YS++LF++MR  R+   WPV      +     E P+    +V+GW+      R   F  +M+GFA +   IL +PK
Sbjct:  156 RATEQRNAGLAWLRQRHQHQSAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRR----YERPLVKNGKVVGWYTGWREDR--PFAIDMAGFAVSLQVILSNPK 260

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA2_RAT (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 OS=Rattus norvegicus GN=B3gat2 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.061e-10
Identity = 35/111 (31.53%), Postives = 57/111 (51.35%), Query Frame = -3

Query:   83 RSVHQRNVALSHIETHHL-----DGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFN-STILWDPK 397
            R+  QRN  L+ +   H       G+++FA++ N YS++LF++MR  R+   WPV      +     E P+    +V+GW+      R   F  +M+GFA +   IL +PK
Sbjct:  156 RATEQRNAGLAWLRQRHQHQSAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRR----YERPLVKNGKVVGWYTGWREDR--PFAIDMAGFAVSLQVILSNPK 260

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA3_HUMAN (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Homo sapiens GN=B3GAT3 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 6.942e-10
Identity = 45/148 (30.41%), Postives = 65/148 (43.92%), Query Frame = -3

Query:   89 ILRRSGVMYRHLVC----KKNLTD-----IKDRSVHQRNVALSHIETHH-------------LDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWD 466
            +L  SG+++ HLV      + L +     +  R V QRN AL  +                   G+VYFA++ N YS +LFE+MR  R    WPV      +     EGP     +V+G+H      R   F  +M+GFA    +L D
Sbjct:  124 LLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLR----FEGPQVQDGRVVGFHTAWEPSR--PFPVDMAGFAVALPLLLD 265

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
M1BLG8_SOLTU	4.737e-77	70.51	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
A0A0B2PIP0_GLYSO	8.418e-77	67.31	Putative beta-1,4-xylosyltransferase IRX9H OS=Glyc...	[more]
A0A059BKY1_EUCGR	4.707e-76	71.79	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
R0ILI6_9BRAS	9.275e-76	68.59	Uncharacterized protein OS=Capsella rubella GN=CAR...	[more]
A0A068TXC8_COFCA	1.166e-75	69.23	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
B3G2P_DROME	1.708e-14	29.61	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA1_CANFA	1.936e-11	35.56	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA1_HUMAN	2.018e-11	35.56	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA1_RAT	2.223e-11	35.56	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA1_MOUSE	2.333e-11	35.56	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA2_CANFA	1.016e-10	29.41	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA2_HUMAN	1.127e-10	29.93	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA2_MOUSE	2.022e-10	31.53	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA2_RAT	2.061e-10	31.53	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA3_HUMAN	6.942e-10	30.41	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029044	Nucleotide-diphospho-sugar transferases	GENE3D	3.90.550.10		coord: 1..148 e-value: 5.4E-46 score: 156.2
IPR029044	Nucleotide-diphospho-sugar transferases	SUPERFAMILY	53448	Nucleotide-diphospho-sugar transferases	coord: 1..146
IPR005027	Glycosyl transferase, family 43	PFAM	PF03360	Glyco_transf_43	coord: 1..147 e-value: 1.5E-41 score: 142.3
IPR005027	Glycosyl transferase, family 43	PANTHER	PTHR10896	GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE	coord: 1..148
None	No IPR available	PANTHER	PTHR10896:SF27	SUBFAMILY NOT NAMED	coord: 1..148

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0002778 ID=g.arboreum_cottongen_reftransV1_0002778; Name=g.arboreum_cottongen_reftransV1_0002778; organism=Gossypium arboreum; type=contig; length=471bp
GTTCAATAAATGAGCTTGCATGGAAACCATCTTCGACCGTGTCAAGCTGT
CTTATCGGTTCAAGAGTAGGTCGGTGCCATGGCTTTGGATCCCATAGTAT
GGTACTGTTGAAGGCAAACCCTGACATTTCAGCATGGAATCTTTGGAATC
GCTTGCTTAATCCATTTAGGTGCCATCCAATGACTTGAGTTCCATTACAA
ACAGGGCCTTCCAATACAGCTCTACTTTTGTCCGATGTTTGTTTGGCCAC
AGGCCAAGTCCCAAACTGCCTAATATGCCTCATTTGCTCAAAGAGATCAA
TTGAGTAGATGTTATGTTCATTGGCAAAGTAGACAATTCCATCAAGATGA
TGAGTTTCGATGTGAGATAGTGCCACATTTCTTTGGTGAACACTTCTGTC
TTTTATATCAGTCAGATTTTTCTTGCAGACAAGATGCCTATACATAACAC
CGCTCCTTCTTAGGATGTCAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR029044	Nucleotide-diphossugar_trans
IPR005027	Glyco_trans_43

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity

Search form

g.arboreum_cottongen_reftransV1_0002778, g.arboreum_cottongen_reftransV1_0002778 (contig) Gossypium arboreum

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