g.arboreum_cottongen_reftransV1_0002778, g.arboreum_cottongen_reftransV1_0002778 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: M5XC47_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005926mg PE=4 SV=1) HSP 1 Score: 263.848 bits (673), Expect = 2.123e-83 Identity = 119/156 (76.28%), Postives = 137/156 (87.82%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 DIL+R+G+MYRHLVC NLTD++DRSVHQRNVALSHIETH LDGIVYFA+E N+YS DLFEQMR IR+FGTW VAK S K + ++EGPVCNGTQVIGWH+N S+RFQRFHA++SGFAFNS+ILWDPK WHRPTLEPIRQL+T D F AS+FIE Sbjct: 232 DILKRTGIMYRHLVCNNNLTDVRDRSVHQRNVALSHIETHRLDGIVYFADEDNVYSTDLFEQMRQIRRFGTWTVAKLMSGKMKPIIEGPVCNGTQVIGWHVNESSRRFQRFHAKISGFAFNSSILWDPKGWHRPTLEPIRQLETDNDDFKASTFIE 387
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A067GJ77_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013438mg PE=4 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 2.779e-83 Identity = 117/156 (75.00%), Postives = 137/156 (87.82%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 D+LRR+GVMYRHLVCKKNLTD+KD VHQRNVALSHIE HHLDGIVYFA+E+NIY DLFE++R IR+FGTW V K + +K +LEGP+CNGT+VIGWH+N +RF+RFHAEMSGFAFNSTILWDPK WHRPTLEPIRQ+ TV+DGF AS+F+E Sbjct: 235 DVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQIRRFGTWTVGKLSENKMDTILEGPICNGTRVIGWHVNEPRERFRRFHAEMSGFAFNSTILWDPKRWHRPTLEPIRQVVTVKDGFQASTFVE 390
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: B9RS38_RICCO (Beta-1,3-glucuronyltransferase, putative OS=Ricinus communis GN=RCOM_0802770 PE=4 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 1.017e-82 Identity = 118/156 (75.64%), Postives = 136/156 (87.18%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 DILRR+GVMYRHL+CKKN+TDIKD S+HQRNVALSHIETHHLDGIVYFA++ NIY DLFE+MR +R+FGTW VAK T DKS+ LEGP+CNG++VIGWH+N S+RF+RFHA+MSGFAFNSTILWD K W RPTLEPIR LDT DGF S+FIE Sbjct: 233 DILRRTGVMYRHLICKKNVTDIKDGSIHQRNVALSHIETHHLDGIVYFADDDNIYLADLFEKMREMRRFGTWTVAKVTGDKSKGFLEGPICNGSRVIGWHVNEPSRRFRRFHADMSGFAFNSTILWDQKRWRRPTLEPIRLLDTFRDGFQVSTFIE 388
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: D7SUC2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03610 PE=4 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 1.315e-82 Identity = 117/156 (75.00%), Postives = 135/156 (86.54%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 D+L R+GVMYRHL+C KNLTDIKDR VH RN ALSHIETH LDG VYFA++ NIYS+DLFEQ+R IR+FGTW VAK KS+ +LEGPVCNG+QVIGWH N +++RF+RFH EMSGFAFNSTILWDPK WHRPTLEPIRQLDTV++GF S+FIE Sbjct: 243 DMLMRTGVMYRHLMCNKNLTDIKDRGVHLRNTALSHIETHRLDGTVYFADDDNIYSVDLFEQIRQIRRFGTWTVAKLMESKSKTLLEGPVCNGSQVIGWHTNEMTRRFRRFHTEMSGFAFNSTILWDPKRWHRPTLEPIRQLDTVKEGFQVSTFIE 398
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: W9RC65_9ROSA (Putative beta-1,4-xylosyltransferase IRX9H OS=Morus notabilis GN=L484_007250 PE=4 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 2.507e-80 Identity = 116/156 (74.36%), Postives = 135/156 (86.54%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 D+LRR+GVMYRHLVC NLTD++DR VHQRNVALSHIETHHLDGIVYFA++ NIY+ DLFEQMR IR+FG W VAK +K+ AVLEGPVCNGT+V+GWH+NGL RF+RFHAE+SGFAFNSTILWDPK WHRP LEPIRQ DT+++ S+FIE Sbjct: 249 DLLRRTGVMYRHLVCNVNLTDVRDRRVHQRNVALSHIETHHLDGIVYFADDDNIYTADLFEQMRQIRRFGVWTVAK-VENKNIAVLEGPVCNGTKVLGWHINGLRWRFRRFHAEISGFAFNSTILWDPKRWHRPMLEPIRQRDTIKEALQVSTFIE 403
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: Q7XHJ8_SOLLC (Beta3-glucuronyltransferase (Fragment) OS=Solanum lycopersicum GN=pglcat1 PE=2 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 9.968e-80 Identity = 111/156 (71.15%), Postives = 132/156 (84.62%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 DILR++GVMYRHLVC KN+TDIKDR VHQRNVAL HIE H L+GIVYFA++ NIYS++LFE +R I +FGTWPVA KS+A+LEGPVCNG+QVIGWH N SK+ +RFH +MSGFAFNSTILWDPK WHRPT +PIRQLD V++GF ++FIE Sbjct: 55 DILRKTGVMYRHLVCSKNMTDIKDRGVHQRNVALEHIEHHRLNGIVYFADDDNIYSLELFESIRSINRFGTWPVAMLAQSKSKAILEGPVCNGSQVIGWHTNEKSKQLRRFHVDMSGFAFNSTILWDPKKWHRPTSDPIRQLDNVKEGFQETTFIE 210
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: K4BUC9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g076920.2 PE=4 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 3.226e-79 Identity = 111/156 (71.15%), Postives = 132/156 (84.62%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 DILR++GVMYRHLVC KN+TDIKDR VHQRNVAL HIE H L+GIVYFA++ NIYS++LFE +R I +FGTWPVA KS+A+LEGPVCNG+QVIGWH N SK+ +RFH +MSGFAFNSTILWDPK WHRPT +PIRQLD V++GF ++FIE Sbjct: 114 DILRKTGVMYRHLVCSKNMTDIKDRGVHQRNVALEHIEHHRLNGIVYFADDDNIYSLELFESIRSINRFGTWPVAMLAQSKSKAILEGPVCNGSQVIGWHTNEKSKQLRRFHVDMSGFAFNSTILWDPKKWHRPTSDPIRQLDNVKEGFQETTFIE 269
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: M1A7G6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006379 PE=4 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 5.521e-78 Identity = 110/156 (70.51%), Postives = 131/156 (83.97%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 DILR++GVMYRHLVC KN+T IKDR VHQRNVAL HIE H L+GIVYFA++ NIYS++LFE +R I +FGTWPVA KS+A+LEGPVCNG+QVIGWH N SK+ +RFH +MSGFAFNSTILWDPK WHRPT +PIRQLD V++GF ++FIE Sbjct: 113 DILRKTGVMYRHLVCSKNMTYIKDRGVHQRNVALEHIEHHRLNGIVYFADDDNIYSLELFESIRSINRFGTWPVAMLAQSKSKAILEGPVCNGSQVIGWHTNEKSKQLRRFHVDMSGFAFNSTILWDPKKWHRPTSDPIRQLDNVKEGFQETTFIE 268
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: K4CM67_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g068430.2 PE=4 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 1.891e-77 Identity = 109/156 (69.87%), Postives = 131/156 (83.97%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 DILRR+GVMYRHLVC KNLTD+K+++VH RNVALSHIETHHLDGIVYFA+E+NIYS D+FEQMR I + GTW VA+ + + +L+GP+CNG+QVIGWH G +KRFQRF+AE+SGFAFNSTILWD K WHRPTLEPIRQ +T + S+FIE Sbjct: 196 DILRRTGVMYRHLVCSKNLTDVKEKNVHLRNVALSHIETHHLDGIVYFADEYNIYSADVFEQMRQISRIGTWIVARLAENNRKVILQGPICNGSQVIGWHTEGRTKRFQRFYAEISGFAFNSTILWDTKRWHRPTLEPIRQSNTAKASSQVSTFIE 351
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0A0LE43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893450 PE=4 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 3.158e-77 Identity = 110/156 (70.51%), Postives = 133/156 (85.26%), Query Frame = -3 Query: 2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469 +ILR++GVMYRHLVC KN+TD+KDR VHQRNVAL HIE H LDGIVYFA++ NIYS++LF+ +R I +FGTWPVA +K++AVLEGPVCNG+QVIGWH N SKR +RFH +MSGFAFNSTILWDPK W RPT +PIRQLDTV++GF ++FIE Sbjct: 202 EILRKTGVMYRHLVCTKNMTDVKDRGVHQRNVALQHIERHKLDGIVYFADDDNIYSLELFDSLRDISRFGTWPVAMLAQNKNKAVLEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPTSKPIRQLDTVKEGFQETTFIE 357
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: IRX14_ARATH (Probable beta-1,4-xylosyltransferase IRX14 OS=Arabidopsis thaliana GN=IRX14 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 1.807e-9 Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = -3 Query: 89 ILRRSGVMYRHLVCKKNLTDI-KDRS---VHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVA--KQTSDKSRAVL---------------------EGPVCNGT-QVIGWHL------NGLSKRFQRFHA-------EMSGFAFNSTILWD 466 I+ +SG+ H+ + + + +DRS V R AL + LDGIV FA++ N++S++LF+++++++ FGT V + + VL +GP CN T Q+IGWH+ G S + A E SGF NS +LW+ Sbjct: 209 IIAKSGLRTIHVGIDQRMPNTWEDRSKLEVFMRLQALRVVREEKLDGIVMFADDSNMHSMELFDEIQNVKWFGTVSVGILAHSGNAEEMVLSMEKRKEMEKEEEEESSSLPVQGPACNSTDQLIGWHIFNTLPYAGKSAVYIDDVAAVLPQKLEWSGFVLNSRLLWE 375
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: GT43_ORYSJ (Probable glucuronosyltransferase Os04g0650300 OS=Oryza sativa subsp. japonica GN=Os04g0650300 PE=3 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.403e-8 Identity = 45/169 (26.63%), Postives = 77/169 (45.56%), Query Frame = -3 Query: 8 ILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDK--SRAVLEGPVCNGT-QVIGWHLNG------------LSKRFQRFHAEMSGFAFNSTILWD-PKPWHRPTLEPIRQLDTVEDGFHASSF 466 +L RS + + H+ + T R AL I +DG+V FA+E++I +LF++ + ++ G PV D+ S L+ P C+ +++G+H++ LS R E +GF N+ LW+ RP E + +D ++DG AS Sbjct: 219 VLSRSNLNFLHITGPDSSTS------RLRMHALREIRKRKMDGVVVFADENSILRTELFDEAQKVKSVGAVPVGVLGEDEGTSETFLQAPSCDAEGKLVGYHVSEETMLPANRGDMLLSSRL-----EWAGFVVNAQALWEGGGAASRP--EWVSDIDAIDDGAAASPL 374
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA3_MOUSE (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Mus musculus GN=B3gat3 PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.404e-8 Identity = 42/146 (28.77%), Postives = 64/146 (43.84%), Query Frame = -3 Query: 95 ILRRSGVMYRHLVC----KKNLTD-----IKDRSVHQRNVALSHIE-------------THHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTIL 466 +L SG+++ HL + L + ++ R V QRN AL + G+VYFA++ N YS +LF++MR R WPV + EGP +V+G+H R F +M+GFA +L Sbjct: 124 LLAASGLLFTHLAVLTPKAQRLREGEPGWVRPRGVEQRNKALDWLRGKGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFKEMRWTRGVSVWPVGLVGGLR----FEGPQVQDGRVVGFHTAWEPNR--PFPLDMAGFAVALPLL 263
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA3_CRIGR (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Cricetulus griseus GN=B3GAT3 PE=2 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 1.676e-8 Identity = 42/146 (28.77%), Postives = 64/146 (43.84%), Query Frame = -3 Query: 95 ILRRSGVMYRHLVC----KKNLTD-----IKDRSVHQRNVALSHIETHH-------------LDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTIL 466 +L SG+++ HL + L + ++ R V QRN AL + G+VYFA++ N YS +LF++MR R WPV + EGP +V+G+H R F +M+GFA +L Sbjct: 124 LLAASGLLFTHLAVLTPKAQRLREGEPGWVRPRGVEQRNKALDWLRGKGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFKEMRWTRGVSVWPVGLVGGLR----FEGPRVQDGRVVGFHTAWEPNR--PFPLDMAGFAVALPLL 263
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: IX14H_ARATH (Probable beta-1,4-xylosyltransferase IRX14H OS=Arabidopsis thaliana GN=IRX14H PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.773e-8 Identity = 37/150 (24.67%), Postives = 69/150 (46.00%), Query Frame = -3 Query: 23 ALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVA-------------------KQTSDKSRAVLEGPVCNGTQ-VIGWHL---NGLSKRFQRF----------HAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGF 373 AL + LDGIV FA++ N++S++LF++++ ++ FG V + +K ++GP CN ++ ++GWH+ +K+ + E SGF NS +LW +P ++ L ++DG+ Sbjct: 236 ALRVVREKKLDGIVMFADDSNMHSMELFDEIQTVKWFGALSVGILAHSGNADELSSILKNEQGKNKEKPSMPIQGPSCNSSEKLVGWHIFNTQPYAKKTAVYIDEKAPVMPSKMEWSGFVLNSRLLWKESLDDKPAW--VKDLSLLDDGY 383 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002778 ID=g.arboreum_cottongen_reftransV1_0002778; Name=g.arboreum_cottongen_reftransV1_0002778; organism=Gossypium arboreum; type=contig; length=471bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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