g.arboreum_cottongen_reftransV1_0002778, g.arboreum_cottongen_reftransV1_0002778 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0002778
Unique Name	g.arboreum_cottongen_reftransV1_0002778
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	471

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr1	chromosome	g.arboreum_cottongen_reftransV1_0002778:1..471 . Chr1:59000790..59001730 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: M5XC47_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005926mg PE=4 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 2.123e-83
Identity = 119/156 (76.28%), Postives = 137/156 (87.82%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DIL+R+G+MYRHLVC  NLTD++DRSVHQRNVALSHIETH LDGIVYFA+E N+YS DLFEQMR IR+FGTW VAK  S K + ++EGPVCNGTQVIGWH+N  S+RFQRFHA++SGFAFNS+ILWDPK WHRPTLEPIRQL+T  D F AS+FIE
Sbjct:  232 DILKRTGIMYRHLVCNNNLTDVRDRSVHQRNVALSHIETHRLDGIVYFADEDNVYSTDLFEQMRQIRRFGTWTVAKLMSGKMKPIIEGPVCNGTQVIGWHVNESSRRFQRFHAKISGFAFNSSILWDPKGWHRPTLEPIRQLETDNDDFKASTFIE 387

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A067GJ77_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013438mg PE=4 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 2.779e-83
Identity = 117/156 (75.00%), Postives = 137/156 (87.82%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            D+LRR+GVMYRHLVCKKNLTD+KD  VHQRNVALSHIE HHLDGIVYFA+E+NIY  DLFE++R IR+FGTW V K + +K   +LEGP+CNGT+VIGWH+N   +RF+RFHAEMSGFAFNSTILWDPK WHRPTLEPIRQ+ TV+DGF AS+F+E
Sbjct:  235 DVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQIRRFGTWTVGKLSENKMDTILEGPICNGTRVIGWHVNEPRERFRRFHAEMSGFAFNSTILWDPKRWHRPTLEPIRQVVTVKDGFQASTFVE 390

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: B9RS38_RICCO (Beta-1,3-glucuronyltransferase, putative OS=Ricinus communis GN=RCOM_0802770 PE=4 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.017e-82
Identity = 118/156 (75.64%), Postives = 136/156 (87.18%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILRR+GVMYRHL+CKKN+TDIKD S+HQRNVALSHIETHHLDGIVYFA++ NIY  DLFE+MR +R+FGTW VAK T DKS+  LEGP+CNG++VIGWH+N  S+RF+RFHA+MSGFAFNSTILWD K W RPTLEPIR LDT  DGF  S+FIE
Sbjct:  233 DILRRTGVMYRHLICKKNVTDIKDGSIHQRNVALSHIETHHLDGIVYFADDDNIYLADLFEKMREMRRFGTWTVAKVTGDKSKGFLEGPICNGSRVIGWHVNEPSRRFRRFHADMSGFAFNSTILWDQKRWRRPTLEPIRLLDTFRDGFQVSTFIE 388

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: D7SUC2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03610 PE=4 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.315e-82
Identity = 117/156 (75.00%), Postives = 135/156 (86.54%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            D+L R+GVMYRHL+C KNLTDIKDR VH RN ALSHIETH LDG VYFA++ NIYS+DLFEQ+R IR+FGTW VAK    KS+ +LEGPVCNG+QVIGWH N +++RF+RFH EMSGFAFNSTILWDPK WHRPTLEPIRQLDTV++GF  S+FIE
Sbjct:  243 DMLMRTGVMYRHLMCNKNLTDIKDRGVHLRNTALSHIETHRLDGTVYFADDDNIYSVDLFEQIRQIRRFGTWTVAKLMESKSKTLLEGPVCNGSQVIGWHTNEMTRRFRRFHTEMSGFAFNSTILWDPKRWHRPTLEPIRQLDTVKEGFQVSTFIE 398

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: W9RC65_9ROSA (Putative beta-1,4-xylosyltransferase IRX9H OS=Morus notabilis GN=L484_007250 PE=4 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 2.507e-80
Identity = 116/156 (74.36%), Postives = 135/156 (86.54%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            D+LRR+GVMYRHLVC  NLTD++DR VHQRNVALSHIETHHLDGIVYFA++ NIY+ DLFEQMR IR+FG W VAK   +K+ AVLEGPVCNGT+V+GWH+NGL  RF+RFHAE+SGFAFNSTILWDPK WHRP LEPIRQ DT+++    S+FIE
Sbjct:  249 DLLRRTGVMYRHLVCNVNLTDVRDRRVHQRNVALSHIETHHLDGIVYFADDDNIYTADLFEQMRQIRRFGVWTVAK-VENKNIAVLEGPVCNGTKVLGWHINGLRWRFRRFHAEISGFAFNSTILWDPKRWHRPMLEPIRQRDTIKEALQVSTFIE 403

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: Q7XHJ8_SOLLC (Beta3-glucuronyltransferase (Fragment) OS=Solanum lycopersicum GN=pglcat1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 9.968e-80
Identity = 111/156 (71.15%), Postives = 132/156 (84.62%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILR++GVMYRHLVC KN+TDIKDR VHQRNVAL HIE H L+GIVYFA++ NIYS++LFE +R I +FGTWPVA     KS+A+LEGPVCNG+QVIGWH N  SK+ +RFH +MSGFAFNSTILWDPK WHRPT +PIRQLD V++GF  ++FIE
Sbjct:   55 DILRKTGVMYRHLVCSKNMTDIKDRGVHQRNVALEHIEHHRLNGIVYFADDDNIYSLELFESIRSINRFGTWPVAMLAQSKSKAILEGPVCNGSQVIGWHTNEKSKQLRRFHVDMSGFAFNSTILWDPKKWHRPTSDPIRQLDNVKEGFQETTFIE 210

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: K4BUC9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g076920.2 PE=4 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 3.226e-79
Identity = 111/156 (71.15%), Postives = 132/156 (84.62%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILR++GVMYRHLVC KN+TDIKDR VHQRNVAL HIE H L+GIVYFA++ NIYS++LFE +R I +FGTWPVA     KS+A+LEGPVCNG+QVIGWH N  SK+ +RFH +MSGFAFNSTILWDPK WHRPT +PIRQLD V++GF  ++FIE
Sbjct:  114 DILRKTGVMYRHLVCSKNMTDIKDRGVHQRNVALEHIEHHRLNGIVYFADDDNIYSLELFESIRSINRFGTWPVAMLAQSKSKAILEGPVCNGSQVIGWHTNEKSKQLRRFHVDMSGFAFNSTILWDPKKWHRPTSDPIRQLDNVKEGFQETTFIE 269

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: M1A7G6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006379 PE=4 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 5.521e-78
Identity = 110/156 (70.51%), Postives = 131/156 (83.97%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILR++GVMYRHLVC KN+T IKDR VHQRNVAL HIE H L+GIVYFA++ NIYS++LFE +R I +FGTWPVA     KS+A+LEGPVCNG+QVIGWH N  SK+ +RFH +MSGFAFNSTILWDPK WHRPT +PIRQLD V++GF  ++FIE
Sbjct:  113 DILRKTGVMYRHLVCSKNMTYIKDRGVHQRNVALEHIEHHRLNGIVYFADDDNIYSLELFESIRSINRFGTWPVAMLAQSKSKAILEGPVCNGSQVIGWHTNEKSKQLRRFHVDMSGFAFNSTILWDPKKWHRPTSDPIRQLDNVKEGFQETTFIE 268

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: K4CM67_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g068430.2 PE=4 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 1.891e-77
Identity = 109/156 (69.87%), Postives = 131/156 (83.97%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILRR+GVMYRHLVC KNLTD+K+++VH RNVALSHIETHHLDGIVYFA+E+NIYS D+FEQMR I + GTW VA+   +  + +L+GP+CNG+QVIGWH  G +KRFQRF+AE+SGFAFNSTILWD K WHRPTLEPIRQ +T +     S+FIE
Sbjct:  196 DILRRTGVMYRHLVCSKNLTDVKEKNVHLRNVALSHIETHHLDGIVYFADEYNIYSADVFEQMRQISRIGTWIVARLAENNRKVILQGPICNGSQVIGWHTEGRTKRFQRFYAEISGFAFNSTILWDTKRWHRPTLEPIRQSNTAKASSQVSTFIE 351

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0A0LE43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893450 PE=4 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 3.158e-77
Identity = 110/156 (70.51%), Postives = 133/156 (85.26%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            +ILR++GVMYRHLVC KN+TD+KDR VHQRNVAL HIE H LDGIVYFA++ NIYS++LF+ +R I +FGTWPVA    +K++AVLEGPVCNG+QVIGWH N  SKR +RFH +MSGFAFNSTILWDPK W RPT +PIRQLDTV++GF  ++FIE
Sbjct:  202 EILRKTGVMYRHLVCTKNMTDVKDRGVHQRNVALQHIERHKLDGIVYFADDDNIYSLELFDSLRDISRFGTWPVAMLAQNKNKAVLEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPTSKPIRQLDTVKEGFQETTFIE 357

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3G2P_DROME (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P OS=Drosophila melanogaster GN=GlcAT-P PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.708e-14
Identity = 45/152 (29.61%), Postives = 74/152 (48.68%), Query Frame = -3

Query:   23 LRRSGVMYRHLVCK-----KNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGF 463
            L R GV Y ++V       K     K R V  RN  L ++  H  +G++YFA++ N Y I +FEQMR+I +   WPV   T    +  +  P+    +++G++   +  R  ++  +M+GFA +   L +     RP  +   +    EDGF
Sbjct:  281 LDRIGVPYEYMVAPMPEKYKQTKKAKPRGVSNRNRGLEYLREHATEGVLYFADDDNTYDISIFEQMRYISKVAMWPVGLVT----KTGVSSPIIQAGKLVGYYDGWIGGR--KYPVDMAGFAVSVKFLKE-----RPNAQMPFKPGYEEDGF 421

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA1_CANFA (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 OS=Canis familiaris GN=B3GAT1 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.936e-11
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -3

Query:  107 ILRRSGVMYRHLVCK-----KNLTDIKD----RSVHQRNVALSHI-ETHHLD----GIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGT-QVIGWHLNGLSKRFQRFHAEMSGFAFN 466
            +LR +G+ Y HL  +     K   D +D    R   QRN+AL  + ET   +    G+VYFA++ N YS++LFE+MR  R+   WPVA     +     E P  NG  +V+GW    +    + F  +M+GFA N
Sbjct:  134 LLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLR----YEAPRVNGAGKVVGW--KTVFDPHRPFAIDMAGFAVN 262

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA1_HUMAN (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 OS=Homo sapiens GN=B3GAT1 PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.018e-11
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -3

Query:  107 ILRRSGVMYRHLVCK-----KNLTDIKD----RSVHQRNVALSHI-ETHHLD----GIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGT-QVIGWHLNGLSKRFQRFHAEMSGFAFN 466
            +LR +G+ Y HL  +     K   D +D    R   QRN+AL  + ET   +    G+VYFA++ N YS++LFE+MR  R+   WPVA     +     E P  NG  +V+GW    +    + F  +M+GFA N
Sbjct:  133 LLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLR----YEAPRVNGAGKVVGW--KTVFDPHRPFAIDMAGFAVN 261

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA1_RAT (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 OS=Rattus norvegicus GN=B3gat1 PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.223e-11
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -3

Query:  107 ILRRSGVMYRHLVCK-----KNLTDIKD----RSVHQRNVALSHI-ETHHLD----GIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGT-QVIGWHLNGLSKRFQRFHAEMSGFAFN 466
            +LR +G+ Y HL  +     K   D +D    R   QRN+AL  + ET   +    G+VYFA++ N YS++LFE+MR  R+   WPVA     +     E P  NG  +V+GW    +    + F  +M+GFA N
Sbjct:  133 LLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSTQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLR----YEAPRVNGAGKVVGW--KTVFDPHRPFAIDMAGFAVN 261

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA1_MOUSE (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 OS=Mus musculus GN=B3gat1 PE=2 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.333e-11
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -3

Query:  107 ILRRSGVMYRHLVCK-----KNLTDIKD----RSVHQRNVALSHI-ETHHLD----GIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGT-QVIGWHLNGLSKRFQRFHAEMSGFAFN 466
            +LR +G+ Y HL  +     K   D +D    R   QRN+AL  + ET   +    G+VYFA++ N YS++LFE+MR  R+   WPVA     +     E P  NG  +V+GW    +    + F  +M+GFA N
Sbjct:  133 LLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSTQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLR----YEAPRVNGAGKVVGW--KTVFDPHRPFAIDMAGFAVN 261

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA2_CANFA (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 OS=Canis familiaris GN=B3GAT2 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.016e-10
Identity = 40/136 (29.41%), Postives = 67/136 (49.26%), Query Frame = -3

Query:   83 LRRSGVMYRHL---VCKKNLTDIKDRSVHQRNVALSHIETHHL-----DGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFN-STILWDPK 463
            L R+G+   HL     ++       R+  QRN  L+ +   H       G+++FA++ N YS++LF++MR  R+   WPV      +     E P+    +V+GW+    + R   F  +M+GFA +   IL +PK
Sbjct:  136 LARAGLPSTHLHVPTPRRYKRPGLPRATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRR----YERPLVENGKVVGWYTGWRADR--PFAIDMAGFAVSLQVILSNPK 265

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA2_HUMAN (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 OS=Homo sapiens GN=B3GAT2 PE=1 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 1.127e-10
Identity = 41/137 (29.93%), Postives = 70/137 (51.09%), Query Frame = -3

Query:   29 RSVHQRNVALSHIETHHL-----DGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFN-STILWDPKP-WHRPTLEP-------IRQLDTVED 397
            R+  QRN  L+ +   H       G+++FA++ N YS++LF++MR  R+   WPV      +     E P+    +V+GW+    + R   F  +M+GFA +   IL +PK  + R   +P       ++Q+ TVE+
Sbjct:  155 RATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRR----YERPLVENGKVVGWYTGWRADR--PFAIDMAGFAVSLQVILSNPKAVFKRRGSQPGMQESDFLKQITTVEE 285

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA2_MOUSE (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 OS=Mus musculus GN=B3gat2 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.022e-10
Identity = 35/111 (31.53%), Postives = 57/111 (51.35%), Query Frame = -3

Query:   83 RSVHQRNVALSHIETHHL-----DGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFN-STILWDPK 397
            R+  QRN  L+ +   H       G+++FA++ N YS++LF++MR  R+   WPV      +     E P+    +V+GW+      R   F  +M+GFA +   IL +PK
Sbjct:  156 RATEQRNAGLAWLRQRHQHQSAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRR----YERPLVKNGKVVGWYTGWREDR--PFAIDMAGFAVSLQVILSNPK 260

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA2_RAT (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 OS=Rattus norvegicus GN=B3gat2 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.061e-10
Identity = 35/111 (31.53%), Postives = 57/111 (51.35%), Query Frame = -3

Query:   83 RSVHQRNVALSHIETHHL-----DGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFN-STILWDPK 397
            R+  QRN  L+ +   H       G+++FA++ N YS++LF++MR  R+   WPV      +     E P+    +V+GW+      R   F  +M+GFA +   IL +PK
Sbjct:  156 RATEQRNAGLAWLRQRHQHQSAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRR----YERPLVKNGKVVGWYTGWREDR--PFAIDMAGFAVSLQVILSNPK 260

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA3_HUMAN (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Homo sapiens GN=B3GAT3 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 6.942e-10
Identity = 45/148 (30.41%), Postives = 65/148 (43.92%), Query Frame = -3

Query:   89 ILRRSGVMYRHLVC----KKNLTD-----IKDRSVHQRNVALSHIETHH-------------LDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWD 466
            +L  SG+++ HLV      + L +     +  R V QRN AL  +                   G+VYFA++ N YS +LFE+MR  R    WPV      +     EGP     +V+G+H      R   F  +M+GFA    +L D
Sbjct:  124 LLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLR----FEGPQVQDGRVVGFHTAWEPSR--PFPVDMAGFAVALPLLLD 265

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
M5XC47_PRUPE	2.123e-83	76.28	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A067GJ77_CITSI	2.779e-83	75.00	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
B9RS38_RICCO	1.017e-82	75.64	Beta-1,3-glucuronyltransferase, putative OS=Ricinu...	[more]
D7SUC2_VITVI	1.315e-82	75.00	Putative uncharacterized protein OS=Vitis vinifera...	[more]
W9RC65_9ROSA	2.507e-80	74.36	Putative beta-1,4-xylosyltransferase IRX9H OS=Moru...	[more]
Q7XHJ8_SOLLC	9.968e-80	71.15	Beta3-glucuronyltransferase (Fragment) OS=Solanum ...	[more]
K4BUC9_SOLLC	3.226e-79	71.15	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
M1A7G6_SOLTU	5.521e-78	70.51	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
K4CM67_SOLLC	1.891e-77	69.87	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
A0A0A0LE43_CUCSA	3.158e-77	70.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
B3G2P_DROME	1.708e-14	29.61	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA1_CANFA	1.936e-11	35.56	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA1_HUMAN	2.018e-11	35.56	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA1_RAT	2.223e-11	35.56	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA1_MOUSE	2.333e-11	35.56	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA2_CANFA	1.016e-10	29.41	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA2_HUMAN	1.127e-10	29.93	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA2_MOUSE	2.022e-10	31.53	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA2_RAT	2.061e-10	31.53	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA3_HUMAN	6.942e-10	30.41	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029044	Nucleotide-diphospho-sugar transferases	GENE3D	3.90.550.10		coord: 1..148 e-value: 5.4E-46 score: 156.2
IPR029044	Nucleotide-diphospho-sugar transferases	SUPERFAMILY	53448	Nucleotide-diphospho-sugar transferases	coord: 1..146
IPR005027	Glycosyl transferase, family 43	PFAM	PF03360	Glyco_transf_43	coord: 1..147 e-value: 1.5E-41 score: 142.3
IPR005027	Glycosyl transferase, family 43	PANTHER	PTHR10896	GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE	coord: 1..148
None	No IPR available	PANTHER	PTHR10896:SF27	SUBFAMILY NOT NAMED	coord: 1..148

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0002778 ID=g.arboreum_cottongen_reftransV1_0002778; Name=g.arboreum_cottongen_reftransV1_0002778; organism=Gossypium arboreum; type=contig; length=471bp
GTTCAATAAATGAGCTTGCATGGAAACCATCTTCGACCGTGTCAAGCTGT
CTTATCGGTTCAAGAGTAGGTCGGTGCCATGGCTTTGGATCCCATAGTAT
GGTACTGTTGAAGGCAAACCCTGACATTTCAGCATGGAATCTTTGGAATC
GCTTGCTTAATCCATTTAGGTGCCATCCAATGACTTGAGTTCCATTACAA
ACAGGGCCTTCCAATACAGCTCTACTTTTGTCCGATGTTTGTTTGGCCAC
AGGCCAAGTCCCAAACTGCCTAATATGCCTCATTTGCTCAAAGAGATCAA
TTGAGTAGATGTTATGTTCATTGGCAAAGTAGACAATTCCATCAAGATGA
TGAGTTTCGATGTGAGATAGTGCCACATTTCTTTGGTGAACACTTCTGTC
TTTTATATCAGTCAGATTTTTCTTGCAGACAAGATGCCTATACATAACAC
CGCTCCTTCTTAGGATGTCAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR029044	Nucleotide-diphossugar_trans
IPR005027	Glyco_trans_43

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity

Search form

g.arboreum_cottongen_reftransV1_0002778, g.arboreum_cottongen_reftransV1_0002778 (contig) Gossypium arboreum

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