g.arboreum_cottongen_reftransV1_0002778, g.arboreum_cottongen_reftransV1_0002778 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0002778
Unique Name	g.arboreum_cottongen_reftransV1_0002778
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	471

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr1	chromosome	g.arboreum_cottongen_reftransV1_0002778:1..471 . Chr1:59000790..59001730 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: M5XC47_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005926mg PE=4 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 2.123e-83
Identity = 119/156 (76.28%), Postives = 137/156 (87.82%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DIL+R+G+MYRHLVC  NLTD++DRSVHQRNVALSHIETH LDGIVYFA+E N+YS DLFEQMR IR+FGTW VAK  S K + ++EGPVCNGTQVIGWH+N  S+RFQRFHA++SGFAFNS+ILWDPK WHRPTLEPIRQL+T  D F AS+FIE
Sbjct:  232 DILKRTGIMYRHLVCNNNLTDVRDRSVHQRNVALSHIETHRLDGIVYFADEDNVYSTDLFEQMRQIRRFGTWTVAKLMSGKMKPIIEGPVCNGTQVIGWHVNESSRRFQRFHAKISGFAFNSSILWDPKGWHRPTLEPIRQLETDNDDFKASTFIE 387

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A067GJ77_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013438mg PE=4 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 2.779e-83
Identity = 117/156 (75.00%), Postives = 137/156 (87.82%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            D+LRR+GVMYRHLVCKKNLTD+KD  VHQRNVALSHIE HHLDGIVYFA+E+NIY  DLFE++R IR+FGTW V K + +K   +LEGP+CNGT+VIGWH+N   +RF+RFHAEMSGFAFNSTILWDPK WHRPTLEPIRQ+ TV+DGF AS+F+E
Sbjct:  235 DVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQIRRFGTWTVGKLSENKMDTILEGPICNGTRVIGWHVNEPRERFRRFHAEMSGFAFNSTILWDPKRWHRPTLEPIRQVVTVKDGFQASTFVE 390

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: B9RS38_RICCO (Beta-1,3-glucuronyltransferase, putative OS=Ricinus communis GN=RCOM_0802770 PE=4 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.017e-82
Identity = 118/156 (75.64%), Postives = 136/156 (87.18%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILRR+GVMYRHL+CKKN+TDIKD S+HQRNVALSHIETHHLDGIVYFA++ NIY  DLFE+MR +R+FGTW VAK T DKS+  LEGP+CNG++VIGWH+N  S+RF+RFHA+MSGFAFNSTILWD K W RPTLEPIR LDT  DGF  S+FIE
Sbjct:  233 DILRRTGVMYRHLICKKNVTDIKDGSIHQRNVALSHIETHHLDGIVYFADDDNIYLADLFEKMREMRRFGTWTVAKVTGDKSKGFLEGPICNGSRVIGWHVNEPSRRFRRFHADMSGFAFNSTILWDQKRWRRPTLEPIRLLDTFRDGFQVSTFIE 388

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: D7SUC2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03610 PE=4 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.315e-82
Identity = 117/156 (75.00%), Postives = 135/156 (86.54%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            D+L R+GVMYRHL+C KNLTDIKDR VH RN ALSHIETH LDG VYFA++ NIYS+DLFEQ+R IR+FGTW VAK    KS+ +LEGPVCNG+QVIGWH N +++RF+RFH EMSGFAFNSTILWDPK WHRPTLEPIRQLDTV++GF  S+FIE
Sbjct:  243 DMLMRTGVMYRHLMCNKNLTDIKDRGVHLRNTALSHIETHRLDGTVYFADDDNIYSVDLFEQIRQIRRFGTWTVAKLMESKSKTLLEGPVCNGSQVIGWHTNEMTRRFRRFHTEMSGFAFNSTILWDPKRWHRPTLEPIRQLDTVKEGFQVSTFIE 398

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: W9RC65_9ROSA (Putative beta-1,4-xylosyltransferase IRX9H OS=Morus notabilis GN=L484_007250 PE=4 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 2.507e-80
Identity = 116/156 (74.36%), Postives = 135/156 (86.54%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            D+LRR+GVMYRHLVC  NLTD++DR VHQRNVALSHIETHHLDGIVYFA++ NIY+ DLFEQMR IR+FG W VAK   +K+ AVLEGPVCNGT+V+GWH+NGL  RF+RFHAE+SGFAFNSTILWDPK WHRP LEPIRQ DT+++    S+FIE
Sbjct:  249 DLLRRTGVMYRHLVCNVNLTDVRDRRVHQRNVALSHIETHHLDGIVYFADDDNIYTADLFEQMRQIRRFGVWTVAK-VENKNIAVLEGPVCNGTKVLGWHINGLRWRFRRFHAEISGFAFNSTILWDPKRWHRPMLEPIRQRDTIKEALQVSTFIE 403

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: Q7XHJ8_SOLLC (Beta3-glucuronyltransferase (Fragment) OS=Solanum lycopersicum GN=pglcat1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 9.968e-80
Identity = 111/156 (71.15%), Postives = 132/156 (84.62%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILR++GVMYRHLVC KN+TDIKDR VHQRNVAL HIE H L+GIVYFA++ NIYS++LFE +R I +FGTWPVA     KS+A+LEGPVCNG+QVIGWH N  SK+ +RFH +MSGFAFNSTILWDPK WHRPT +PIRQLD V++GF  ++FIE
Sbjct:   55 DILRKTGVMYRHLVCSKNMTDIKDRGVHQRNVALEHIEHHRLNGIVYFADDDNIYSLELFESIRSINRFGTWPVAMLAQSKSKAILEGPVCNGSQVIGWHTNEKSKQLRRFHVDMSGFAFNSTILWDPKKWHRPTSDPIRQLDNVKEGFQETTFIE 210

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: K4BUC9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g076920.2 PE=4 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 3.226e-79
Identity = 111/156 (71.15%), Postives = 132/156 (84.62%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILR++GVMYRHLVC KN+TDIKDR VHQRNVAL HIE H L+GIVYFA++ NIYS++LFE +R I +FGTWPVA     KS+A+LEGPVCNG+QVIGWH N  SK+ +RFH +MSGFAFNSTILWDPK WHRPT +PIRQLD V++GF  ++FIE
Sbjct:  114 DILRKTGVMYRHLVCSKNMTDIKDRGVHQRNVALEHIEHHRLNGIVYFADDDNIYSLELFESIRSINRFGTWPVAMLAQSKSKAILEGPVCNGSQVIGWHTNEKSKQLRRFHVDMSGFAFNSTILWDPKKWHRPTSDPIRQLDNVKEGFQETTFIE 269

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: M1A7G6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006379 PE=4 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 5.521e-78
Identity = 110/156 (70.51%), Postives = 131/156 (83.97%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILR++GVMYRHLVC KN+T IKDR VHQRNVAL HIE H L+GIVYFA++ NIYS++LFE +R I +FGTWPVA     KS+A+LEGPVCNG+QVIGWH N  SK+ +RFH +MSGFAFNSTILWDPK WHRPT +PIRQLD V++GF  ++FIE
Sbjct:  113 DILRKTGVMYRHLVCSKNMTYIKDRGVHQRNVALEHIEHHRLNGIVYFADDDNIYSLELFESIRSINRFGTWPVAMLAQSKSKAILEGPVCNGSQVIGWHTNEKSKQLRRFHVDMSGFAFNSTILWDPKKWHRPTSDPIRQLDNVKEGFQETTFIE 268

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: K4CM67_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g068430.2 PE=4 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 1.891e-77
Identity = 109/156 (69.87%), Postives = 131/156 (83.97%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILRR+GVMYRHLVC KNLTD+K+++VH RNVALSHIETHHLDGIVYFA+E+NIYS D+FEQMR I + GTW VA+   +  + +L+GP+CNG+QVIGWH  G +KRFQRF+AE+SGFAFNSTILWD K WHRPTLEPIRQ +T +     S+FIE
Sbjct:  196 DILRRTGVMYRHLVCSKNLTDVKEKNVHLRNVALSHIETHHLDGIVYFADEYNIYSADVFEQMRQISRIGTWIVARLAENNRKVILQGPICNGSQVIGWHTEGRTKRFQRFYAEISGFAFNSTILWDTKRWHRPTLEPIRQSNTAKASSQVSTFIE 351

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0A0LE43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893450 PE=4 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 3.158e-77
Identity = 110/156 (70.51%), Postives = 133/156 (85.26%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            +ILR++GVMYRHLVC KN+TD+KDR VHQRNVAL HIE H LDGIVYFA++ NIYS++LF+ +R I +FGTWPVA    +K++AVLEGPVCNG+QVIGWH N  SKR +RFH +MSGFAFNSTILWDPK W RPT +PIRQLDTV++GF  ++FIE
Sbjct:  202 EILRKTGVMYRHLVCTKNMTDVKDRGVHQRNVALQHIERHKLDGIVYFADDDNIYSLELFDSLRDISRFGTWPVAMLAQNKNKAVLEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPTSKPIRQLDTVKEGFQETTFIE 357

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: IRX9H_ARATH (Probable beta-1,4-xylosyltransferase IRX9H OS=Arabidopsis thaliana GN=IRX9H PE=2 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 3.496e-77
Identity = 107/156 (68.59%), Postives = 128/156 (82.05%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            +ILR++GVMYRHLVCK+N+T IKDR VHQRN AL HIE H LDGIVYFA++ NIYS++LF+ +R I +FGTWPVA     K++A+LEGPVCNG+QVIGWH N  SKR +RFH +MSGFAFNSTILWDPK W RP   P RQLDTV++GF  +SFIE
Sbjct:  189 EILRKTGVMYRHLVCKRNMTSIKDRGVHQRNTALEHIELHKLDGIVYFADDDNIYSLELFQSLRQISRFGTWPVAMLAQSKNKAILEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPFSHPTRQLDTVKEGFQETSFIE 344

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: GT12_ORYSJ (Probable glucuronosyltransferase Os01g0675500 OS=Oryza sativa subsp. japonica GN=Os01g0675500 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.841e-53
Identity = 88/156 (56.41%), Postives = 104/156 (66.67%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            +ILR SG+MYRHL+C +N T+I+   V Q+N A+ HI+ H LDGIV+FA+E   YS DLFE+MR IR+FGTWPVA     K R VLEGPVC G QV GWH N      +RF    SGFAFNSTILWDP+ W+ PTLE I        G   S FIE
Sbjct:  241 EILRSSGIMYRHLICNRNTTNIRKIVVCQKNNAIFHIKKHRLDGIVHFADEERAYSADLFEEMRKIRRFGTWPVAIHVGTKYRVVLEGPVCKGNQVTGWHTNQRRGVSRRFPIGFSGFAFNSTILWDPQRWNSPTLESIIVHSGGRGGLQESRFIE 396

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: GT52_ORYSJ (Probable glucuronosyltransferase Os05g0559600 OS=Oryza sativa subsp. japonica GN=Os05g0559600 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.488e-48
Identity = 80/159 (50.31%), Postives = 107/159 (67.30%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWH-LNGLSKR--FQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            +ILR SGVMYRHL+C+KN T ++  +V QRN A+ HI+ H LDGI++FA+E   Y  D+FE+MR IR+FG WPVA  T  K R VLEGP+C G +V GW+ +  + K+   +RF    SGFAFNST+LWDP+ W+RP ++ +        G   S FIE
Sbjct:  243 EILRSSGVMYRHLICRKNTTSVRKIAVCQRNTAIYHIKKHRLDGIMHFADEERSYMSDVFEEMRKIRRFGAWPVAIHTGIKYRVVLEGPICKGNRVTGWNTIQNIQKKSAVRRFPVGFSGFAFNSTMLWDPERWNRPPMDSVIVHSGGRGGLQESRFIE 401

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: GT102_ORYSJ (Probable glucuronosyltransferase Os10g0205300 OS=Oryza sativa subsp. japonica GN=Os10g0205300 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.207e-47
Identity = 83/169 (49.11%), Postives = 102/169 (60.36%), Query Frame = -3

Query:    2 ILRRSGVMYRHLVCK--------------KNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 466
            +LR  GVMYRHL                 +      D    QRN AL HIE H L GIVYFA+E N+YS+DLF  +R IR FGTWPVA     KS+ +L+GPVC G++V+GWH    SK  +RFH +MSGFAFNS+ LWD K         IRQLDT ++GF  ++FIE
Sbjct:  126 LLRGCGVMYRHLSSPVPDAPQDRPRRRGRRQDRPAVDSRARQRNTALDHIEHHRLHGIVYFADEDNVYSLDLFYHLRDIRSFGTWPVATLAPGKSKTILQGPVCEGSRVVGWHTTDRSKNQRRFHVDMSGFAFNSSKLWDAKNRGHQAWNYIRQLDTAKEGFQETAFIE 294

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: IRX9_ARATH (Probable beta-1,4-xylosyltransferase IRX9 OS=Arabidopsis thaliana GN=IRX9 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.091e-41
Identity = 65/135 (48.15%), Postives = 96/135 (71.11%), Query Frame = -3

Query:   65 ILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQ-RFHAEMSGFAFNSTILWDPKPWHRPT 466
            +LR++G+MYR +V K++ T ++    HQRN+AL HIE H L GIV+FA  +NIY +D F ++R I  FGTWP+A  ++++ R V+EGPVC  +QV+GWHL  ++   + +    +S FAFNS+ILWDP+ W RP+
Sbjct:  167 MLRKTGIMYRRIVFKEDFTSLESELDHQRNLALRHIEHHKLSGIVHFAGLNNIYDLDFFVKIRDIEVFGTWPMALLSANRKRVVVEGPVCESSQVLGWHLRKINNETETKPPIHISSFAFNSSILWDPERWGRPS 301

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: GT41_ORYSJ (Probable glucuronosyltransferase Os04g0103100 OS=Oryza sativa subsp. japonica GN=Os04g0103100 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.160e-39
Identity = 67/155 (43.23%), Postives = 95/155 (61.29%), Query Frame = -3

Query:    2 LRRSGVMYRHLVCKKNL-TDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 463
            LRR+ V++R++ C  N+     D   HQ N AL  ++ H LDG++YFA+E  +YS+ LF  +R IR+F TWPV + +   +  VL+GPVC   QV+GWH      + +RFH  MSGFAFNST+LWDPK         IR  + V++    S+F+E
Sbjct:  177 LRRTAVLHRYVGCCHNINASAPDFRPHQINAALDIVDNHRLDGVLYFADEEGVYSLHLFHHLRQIRRFATWPVPEISQHTNEVVLQGPVCKQGQVVGWHTTHDGNKLRRFHLAMSGFAFNSTMLWDPKLRSHLAWNSIRHPEMVKESLQGSAFVE 331

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: GT51_ORYSJ (Probable glucuronosyltransferase Os05g0123100 OS=Oryza sativa subsp. japonica GN=Os05g0123100 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.349e-35
Identity = 65/168 (38.69%), Postives = 97/168 (57.74%), Query Frame = -3

Query:   32 DILRRSGVMYRHLVCK--KNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGW-------------------HLNGLSKRFQRFHA-EMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVE 469
            ++LR +GVMYRHL  +  +N T     +  QRN AL+H+E H L G+V+FA+   +Y    F+++R I  FGTWPVA  ++ + + V+EGP+C+ ++V+GW                    LN       R H  ++SGFAFNS+ILWDP+ W RPT  P    D+++
Sbjct:  157 EVLRGTGVMYRHLAFRPEENFTTADAEAHAQRNAALAHVEKHRLSGVVHFADAAGVYDAHFFDEIRQIEAFGTWPVATMSAGEKKVVVEGPLCSDSKVVGWFSRDFNDGTTRAVTYNTEADLNPAGAAGTRAHTIDVSGFAFNSSILWDPERWGRPTSLPDTSQDSIK 324

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: GT32_ORYSJ (Probable glucuronosyltransferase Os03g0287800 OS=Oryza sativa subsp. japonica GN=Os03g0287800 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.030e-33
Identity = 66/166 (39.76%), Postives = 93/166 (56.02%), Query Frame = -3

Query:   32 ILRRSGVMYRHLVCKKNLTDIKDRSV-----HQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHA---------------EMSGFAFNSTILWDPKPWHR-PTLEPIRQLDTVE 466
            +LR +G+MYRHL  K N T + D +      HQRNVAL HIE H L G+V FA   + + +  F+Q+R IR FG WPVA  + ++ + V++GP C+ + V GW    LS                       ++ GFAFNS++LWDP+ W R PT EP +  D+V+
Sbjct:  149 LLRTTGLMYRHLTYKDNFT-VADAAAGKERHHQRNVALGHIEHHRLAGVVLFAGLGDTFDLRFFDQLRQIRTFGAWPVATMSQNERKVVVQGPACSSSSVAGWFSMDLSNATSPVAVGGAGYGAAAARPRELDVHGFAFNSSVLWDPERWGRYPTSEPDKSQDSVK 313

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: GT71_ORYSJ (Probable glucuronosyltransferase Os07g0694400 OS=Oryza sativa subsp. japonica GN=Os07g0694400 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.420e-23
Identity = 59/167 (35.33%), Postives = 88/167 (52.69%), Query Frame = -3

Query:   32 ILRRSGVMYRHLVCKKNLTD----IKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVC---NGTQVI--GWHLNGLSKRFQRFHA------------EMSGFAFNSTILWDPKPWHR-PTLEPIRQLDTVE 466
            +LRR+GV++RHL+ K+   D    I  R   QRNVAL HIE H + G+V F    +IY + L   +R IR FG WPVA  ++ + + +++GP+C   + + VI  GW    +                     E+ GFAF+S +LWDP  W R P  +P    ++V+
Sbjct:  137 LLRRTGVVHRHLLMKQGDDDFSMQISMRREQQRNVALRHIEDHRIAGVVLFGGLADIYDLRLLHHLRDIRTFGAWPVATVSAYERKVMVQGPLCINTSSSSVITRGWFDMDMDMAAGGERRAAADRPPPETLMEVGGFAFSSWMLWDPHRWDRFPLSDPDASQESVK 303

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: GT11_ORYSJ (Probable glucuronosyltransferase Os01g0157700 OS=Oryza sativa subsp. japonica GN=Os01g0157700 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.857e-19
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = -3

Query:  170 LRRSGVMYRHLV-CKKNLTD-IKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWH 463
            LR + VM+RHL    +N T    D   +Q NVALSHI+ H L G+V+FA   ++Y +  F+Q+R  R    WP+A  +S      LEGP CN +Q+ GW+
Sbjct:  123 LRGTRVMFRHLTYAAENFTGPAGDEVDYQMNVALSHIQLHRLPGVVHFAAASSVYDLRFFQQLRQTRGIAAWPIATVSSADQTVKLEGPTCNSSQITGWY 222

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
M5XC47_PRUPE	2.123e-83	76.28	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A067GJ77_CITSI	2.779e-83	75.00	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
B9RS38_RICCO	1.017e-82	75.64	Beta-1,3-glucuronyltransferase, putative OS=Ricinu...	[more]
D7SUC2_VITVI	1.315e-82	75.00	Putative uncharacterized protein OS=Vitis vinifera...	[more]
W9RC65_9ROSA	2.507e-80	74.36	Putative beta-1,4-xylosyltransferase IRX9H OS=Moru...	[more]
Q7XHJ8_SOLLC	9.968e-80	71.15	Beta3-glucuronyltransferase (Fragment) OS=Solanum ...	[more]
K4BUC9_SOLLC	3.226e-79	71.15	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
M1A7G6_SOLTU	5.521e-78	70.51	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
K4CM67_SOLLC	1.891e-77	69.87	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
A0A0A0LE43_CUCSA	3.158e-77	70.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
IRX9H_ARATH	3.496e-77	68.59	Probable beta-1,4-xylosyltransferase IRX9H OS=Arab...	[more]
GT12_ORYSJ	2.841e-53	56.41	Probable glucuronosyltransferase Os01g0675500 OS=O...	[more]
GT52_ORYSJ	1.488e-48	50.31	Probable glucuronosyltransferase Os05g0559600 OS=O...	[more]
GT102_ORYSJ	3.207e-47	49.11	Probable glucuronosyltransferase Os10g0205300 OS=O...	[more]
IRX9_ARATH	6.091e-41	48.15	Probable beta-1,4-xylosyltransferase IRX9 OS=Arabi...	[more]
GT41_ORYSJ	5.160e-39	43.23	Probable glucuronosyltransferase Os04g0103100 OS=O...	[more]
GT51_ORYSJ	1.349e-35	38.69	Probable glucuronosyltransferase Os05g0123100 OS=O...	[more]
GT32_ORYSJ	5.030e-33	39.76	Probable glucuronosyltransferase Os03g0287800 OS=O...	[more]
GT71_ORYSJ	5.420e-23	35.33	Probable glucuronosyltransferase Os07g0694400 OS=O...	[more]
GT11_ORYSJ	3.857e-19	42.00	Probable glucuronosyltransferase Os01g0157700 OS=O...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029044	Nucleotide-diphospho-sugar transferases	GENE3D	3.90.550.10		coord: 1..148 e-value: 5.4E-46 score: 156.2
IPR029044	Nucleotide-diphospho-sugar transferases	SUPERFAMILY	53448	Nucleotide-diphospho-sugar transferases	coord: 1..146
IPR005027	Glycosyl transferase, family 43	PFAM	PF03360	Glyco_transf_43	coord: 1..147 e-value: 1.5E-41 score: 142.3
IPR005027	Glycosyl transferase, family 43	PANTHER	PTHR10896	GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE	coord: 1..148
None	No IPR available	PANTHER	PTHR10896:SF27	SUBFAMILY NOT NAMED	coord: 1..148

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0002778 ID=g.arboreum_cottongen_reftransV1_0002778; Name=g.arboreum_cottongen_reftransV1_0002778; organism=Gossypium arboreum; type=contig; length=471bp
GTTCAATAAATGAGCTTGCATGGAAACCATCTTCGACCGTGTCAAGCTGT
CTTATCGGTTCAAGAGTAGGTCGGTGCCATGGCTTTGGATCCCATAGTAT
GGTACTGTTGAAGGCAAACCCTGACATTTCAGCATGGAATCTTTGGAATC
GCTTGCTTAATCCATTTAGGTGCCATCCAATGACTTGAGTTCCATTACAA
ACAGGGCCTTCCAATACAGCTCTACTTTTGTCCGATGTTTGTTTGGCCAC
AGGCCAAGTCCCAAACTGCCTAATATGCCTCATTTGCTCAAAGAGATCAA
TTGAGTAGATGTTATGTTCATTGGCAAAGTAGACAATTCCATCAAGATGA
TGAGTTTCGATGTGAGATAGTGCCACATTTCTTTGGTGAACACTTCTGTC
TTTTATATCAGTCAGATTTTTCTTGCAGACAAGATGCCTATACATAACAC
CGCTCCTTCTTAGGATGTCAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR029044	Nucleotide-diphossugar_trans
IPR005027	Glyco_trans_43

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity

Search form

g.arboreum_cottongen_reftransV1_0002778, g.arboreum_cottongen_reftransV1_0002778 (contig) Gossypium arboreum

Pages

Pages