g.arboreum_cottongen_reftransV1_0002778, g.arboreum_cottongen_reftransV1_0002778 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0002778
Unique Name	g.arboreum_cottongen_reftransV1_0002778
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	471

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr1	chromosome	g.arboreum_cottongen_reftransV1_0002778:1..471 . Chr1:59000790..59001730 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0B0N0S9_GOSAR (Putative beta-1,4-xylosyltransferase IRX9H-like protein OS=Gossypium arboreum GN=F383_11501 PE=4 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.121e-111
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE
Sbjct:  238 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 393

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0D2Q9D0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G051500 PE=4 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 1.164e-110
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFA+EHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE
Sbjct:  238 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFADEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 393

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A061GJZ9_THECC (Glycosyl transferase isoform 1 OS=Theobroma cacao GN=TCM_037168 PE=4 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.958e-99
Identity = 141/156 (90.38%), Postives = 148/156 (94.87%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILRRS VMYRHLVCKKNLTDIKDR+VHQRNVALSHIETHHLDGIVYFANE NIYSIDLFEQMRHIR+FGTW VAKQT DKS A+LEGPVCNGTQVIGWHLNGLS+RF+RFHAEMSGFAFNSTILWDPK WHRPTLEP+RQLDTV+DGF AS FIE
Sbjct:  238 DILRRSSVMYRHLVCKKNLTDIKDRNVHQRNVALSHIETHHLDGIVYFANEDNIYSIDLFEQMRHIRRFGTWTVAKQTWDKSSAILEGPVCNGTQVIGWHLNGLSRRFRRFHAEMSGFAFNSTILWDPKRWHRPTLEPVRQLDTVKDGFQASLFIE 393

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0D2RCB1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G290300 PE=4 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.343e-93
Identity = 130/155 (83.87%), Postives = 143/155 (92.26%), Query Frame = -3

Query:    2 ILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 466
            ILR+SG+MYRHLVCKKNLTDIKDR+VHQRNVALSHIETH LDGIVYFA+E+N+YSIDLFEQMRHIRQFGTW VAKQT D +R  LEGPVCNGT+VIGWHLN LSKR++RFHAEM GFAFNSTILWDP+ WHRPTLE IRQL+TV+DGF ASS IE
Sbjct:   97 ILRKSGIMYRHLVCKKNLTDIKDRNVHQRNVALSHIETHRLDGIVYFADEYNVYSIDLFEQMRHIRQFGTWTVAKQTQDNNRVTLEGPVCNGTKVIGWHLNELSKRYRRFHAEMPGFAFNSTILWDPRRWHRPTLEQIRQLETVKDGFQASSIIE 251

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0D2S7S1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G290300 PE=4 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 3.250e-93
Identity = 130/155 (83.87%), Postives = 143/155 (92.26%), Query Frame = -3

Query:    2 ILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 466
            ILR+SG+MYRHLVCKKNLTDIKDR+VHQRNVALSHIETH LDGIVYFA+E+N+YSIDLFEQMRHIRQFGTW VAKQT D +R  LEGPVCNGT+VIGWHLN LSKR++RFHAEM GFAFNSTILWDP+ WHRPTLE IRQL+TV+DGF ASS IE
Sbjct:  130 ILRKSGIMYRHLVCKKNLTDIKDRNVHQRNVALSHIETHRLDGIVYFADEYNVYSIDLFEQMRHIRQFGTWTVAKQTQDNNRVTLEGPVCNGTKVIGWHLNELSKRYRRFHAEMPGFAFNSTILWDPRRWHRPTLEQIRQLETVKDGFQASSIIE 284

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0D2PJW5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G290300 PE=4 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 1.624e-91
Identity = 130/155 (83.87%), Postives = 143/155 (92.26%), Query Frame = -3

Query:    2 ILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 466
            ILR+SG+MYRHLVCKKNLTDIKDR+VHQRNVALSHIETH LDGIVYFA+E+N+YSIDLFEQMRHIRQFGTW VAKQT D +R  LEGPVCNGT+VIGWHLN LSKR++RFHAEM GFAFNSTILWDP+ WHRPTLE IRQL+TV+DGF ASS IE
Sbjct:  238 ILRKSGIMYRHLVCKKNLTDIKDRNVHQRNVALSHIETHRLDGIVYFADEYNVYSIDLFEQMRHIRQFGTWTVAKQTQDNNRVTLEGPVCNGTKVIGWHLNELSKRYRRFHAEMPGFAFNSTILWDPRRWHRPTLEQIRQLETVKDGFQASSIIE 392

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0B0P497_GOSAR (Putative beta-1,4-xylosyltransferase IRX9H-like protein OS=Gossypium arboreum GN=F383_07417 PE=4 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 4.939e-91
Identity = 129/156 (82.69%), Postives = 143/156 (91.67%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            +ILR+SG+MYRHLVCKKNLTDIKDR+VHQRNVALSHIETH LDGIVYFA+E+N+YSIDLF+QMRHIRQFGTW VAKQT D  R  LEGPVCNGT+VIGWHLN LSKR++RFHAEM GFAFNSTILWDP+ WHRPTLE IRQL+TV+DGF ASS IE
Sbjct:  237 NILRKSGIMYRHLVCKKNLTDIKDRNVHQRNVALSHIETHRLDGIVYFADEYNVYSIDLFQQMRHIRQFGTWTVAKQTQDNDRVTLEGPVCNGTKVIGWHLNELSKRYRRFHAEMPGFAFNSTILWDPRRWHRPTLEQIRQLETVKDGFQASSIIE 392

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: B9H905_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25690g PE=4 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.365e-85
Identity = 122/156 (78.21%), Postives = 138/156 (88.46%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILRR+GVMYRHLVC KNLTDIKDRSVHQRNVALSHIE HHLDGIV+FA+++N YS DLFEQMR IR+FGTW VAK T +K++  +EGP+CNGTQVIGWH+N   +RF+RFHA+MSGFAFNSTI+WDPK WHRPT EPIRQLDTV DGF  SSFIE
Sbjct:  237 DILRRTGVMYRHLVCNKNLTDIKDRSVHQRNVALSHIEIHHLDGIVHFADDYNTYSADLFEQMRQIRRFGTWTVAKLTGNKNKDFVEGPICNGTQVIGWHVNDSRRRFRRFHADMSGFAFNSTIIWDPKRWHRPTPEPIRQLDTVRDGFQVSSFIE 392

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: V4UNC6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008306mg PE=4 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.621e-85
Identity = 119/156 (76.28%), Postives = 139/156 (89.10%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            D+LRR+GVMYRHLVCKKNLTD+KD  VHQRNVALSHIE HHLDGIVYFA+E+NIY  DLFE++R IR+FGTW VAK + +K   +LEGP+CNGT+VIGWH+N   +RF+RFHAEMSGFAFNSTILWDPK WHRPTLEPIRQ+DTV+DGF AS+F+E
Sbjct:  235 DVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQIRRFGTWTVAKLSENKMDTILEGPICNGTRVIGWHVNEPRERFRRFHAEMSGFAFNSTILWDPKRWHRPTLEPIRQVDTVKDGFQASTFVE 390

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A5BYD9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024403 PE=4 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 1.253e-84
Identity = 117/156 (75.00%), Postives = 135/156 (86.54%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            D+L R+GVMYRHL+C KNLTDIKDR VH RN ALSHIETH LDG VYFA++ NIYS+DLFEQ+R IR+FGTW VAK    KS+ +LEGPVCNG+QVIGWH N +++RF+RFH EMSGFAFNSTILWDPK WHRPTLEPIRQLDTV++GF  S+FIE
Sbjct:   60 DMLMRTGVMYRHLMCNKNLTDIKDRGVHLRNTALSHIETHRLDGTVYFADDDNIYSVDLFEQIRQIRRFGTWMVAKLMESKSKTLLEGPVCNGSQVIGWHTNEMTRRFRRFHTEMSGFAFNSTILWDPKRWHRPTLEPIRQLDTVKEGFQVSTFIE 215

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: IRX14_ARATH (Probable beta-1,4-xylosyltransferase IRX14 OS=Arabidopsis thaliana GN=IRX14 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.807e-9
Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = -3

Query:   89 ILRRSGVMYRHLVCKKNLTDI-KDRS---VHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVA--KQTSDKSRAVL---------------------EGPVCNGT-QVIGWHL------NGLSKRFQRFHA-------EMSGFAFNSTILWD 466
            I+ +SG+   H+   + + +  +DRS   V  R  AL  +    LDGIV FA++ N++S++LF+++++++ FGT  V     + +    VL                     +GP CN T Q+IGWH+       G S  +    A       E SGF  NS +LW+
Sbjct:  209 IIAKSGLRTIHVGIDQRMPNTWEDRSKLEVFMRLQALRVVREEKLDGIVMFADDSNMHSMELFDEIQNVKWFGTVSVGILAHSGNAEEMVLSMEKRKEMEKEEEEESSSLPVQGPACNSTDQLIGWHIFNTLPYAGKSAVYIDDVAAVLPQKLEWSGFVLNSRLLWE 375

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: GT43_ORYSJ (Probable glucuronosyltransferase Os04g0650300 OS=Oryza sativa subsp. japonica GN=Os04g0650300 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.403e-8
Identity = 45/169 (26.63%), Postives = 77/169 (45.56%), Query Frame = -3

Query:    8 ILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDK--SRAVLEGPVCNGT-QVIGWHLNG------------LSKRFQRFHAEMSGFAFNSTILWD-PKPWHRPTLEPIRQLDTVEDGFHASSF 466
            +L RS + + H+    + T         R  AL  I    +DG+V FA+E++I   +LF++ + ++  G  PV     D+  S   L+ P C+   +++G+H++             LS R      E +GF  N+  LW+      RP  E +  +D ++DG  AS  
Sbjct:  219 VLSRSNLNFLHITGPDSSTS------RLRMHALREIRKRKMDGVVVFADENSILRTELFDEAQKVKSVGAVPVGVLGEDEGTSETFLQAPSCDAEGKLVGYHVSEETMLPANRGDMLLSSRL-----EWAGFVVNAQALWEGGGAASRP--EWVSDIDAIDDGAAASPL 374

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA3_MOUSE (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Mus musculus GN=B3gat3 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.404e-8
Identity = 42/146 (28.77%), Postives = 64/146 (43.84%), Query Frame = -3

Query:   95 ILRRSGVMYRHLVC----KKNLTD-----IKDRSVHQRNVALSHIE-------------THHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTIL 466
            +L  SG+++ HL       + L +     ++ R V QRN AL  +                   G+VYFA++ N YS +LF++MR  R    WPV      +     EGP     +V+G+H      R   F  +M+GFA    +L
Sbjct:  124 LLAASGLLFTHLAVLTPKAQRLREGEPGWVRPRGVEQRNKALDWLRGKGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFKEMRWTRGVSVWPVGLVGGLR----FEGPQVQDGRVVGFHTAWEPNR--PFPLDMAGFAVALPLL 263

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA3_CRIGR (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Cricetulus griseus GN=B3GAT3 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.676e-8
Identity = 42/146 (28.77%), Postives = 64/146 (43.84%), Query Frame = -3

Query:   95 ILRRSGVMYRHLVC----KKNLTD-----IKDRSVHQRNVALSHIETHH-------------LDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTIL 466
            +L  SG+++ HL       + L +     ++ R V QRN AL  +                   G+VYFA++ N YS +LF++MR  R    WPV      +     EGP     +V+G+H      R   F  +M+GFA    +L
Sbjct:  124 LLAASGLLFTHLAVLTPKAQRLREGEPGWVRPRGVEQRNKALDWLRGKGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFKEMRWTRGVSVWPVGLVGGLR----FEGPRVQDGRVVGFHTAWEPNR--PFPLDMAGFAVALPLL 263

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: IX14H_ARATH (Probable beta-1,4-xylosyltransferase IRX14H OS=Arabidopsis thaliana GN=IRX14H PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.773e-8
Identity = 37/150 (24.67%), Postives = 69/150 (46.00%), Query Frame = -3

Query:   23 ALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVA-------------------KQTSDKSRAVLEGPVCNGTQ-VIGWHL---NGLSKRFQRF----------HAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGF 373
            AL  +    LDGIV FA++ N++S++LF++++ ++ FG   V                     +  +K    ++GP CN ++ ++GWH+      +K+   +            E SGF  NS +LW      +P    ++ L  ++DG+
Sbjct:  236 ALRVVREKKLDGIVMFADDSNMHSMELFDEIQTVKWFGALSVGILAHSGNADELSSILKNEQGKNKEKPSMPIQGPSCNSSEKLVGWHIFNTQPYAKKTAVYIDEKAPVMPSKMEWSGFVLNSRLLWKESLDDKPAW--VKDLSLLDDGY 383

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0N0S9_GOSAR	2.121e-111	100.00	Putative beta-1,4-xylosyltransferase IRX9H-like pr...	[more]
A0A0D2Q9D0_GOSRA	1.164e-110	99.36	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061GJZ9_THECC	2.958e-99	90.38	Glycosyl transferase isoform 1 OS=Theobroma cacao ...	[more]
A0A0D2RCB1_GOSRA	1.343e-93	83.87	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2S7S1_GOSRA	3.250e-93	83.87	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2PJW5_GOSRA	1.624e-91	83.87	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0P497_GOSAR	4.939e-91	82.69	Putative beta-1,4-xylosyltransferase IRX9H-like pr...	[more]
B9H905_POPTR	2.365e-85	78.21	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
V4UNC6_9ROSI	2.621e-85	76.28	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A5BYD9_VITVI	1.253e-84	75.00	Putative uncharacterized protein OS=Vitis vinifera...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
IRX14_ARATH	1.807e-9	29.34	Probable beta-1,4-xylosyltransferase IRX14 OS=Arab...	[more]
GT43_ORYSJ	1.403e-8	26.63	Probable glucuronosyltransferase Os04g0650300 OS=O...	[more]
B3GA3_MOUSE	1.404e-8	28.77	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA3_CRIGR	1.676e-8	28.77	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
IX14H_ARATH	1.773e-8	24.67	Probable beta-1,4-xylosyltransferase IRX14H OS=Ara...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029044	Nucleotide-diphospho-sugar transferases	GENE3D	3.90.550.10		coord: 1..148 e-value: 5.4E-46 score: 156.2
IPR029044	Nucleotide-diphospho-sugar transferases	SUPERFAMILY	53448	Nucleotide-diphospho-sugar transferases	coord: 1..146
IPR005027	Glycosyl transferase, family 43	PFAM	PF03360	Glyco_transf_43	coord: 1..147 e-value: 1.5E-41 score: 142.3
IPR005027	Glycosyl transferase, family 43	PANTHER	PTHR10896	GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE	coord: 1..148
None	No IPR available	PANTHER	PTHR10896:SF27	SUBFAMILY NOT NAMED	coord: 1..148

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0002778 ID=g.arboreum_cottongen_reftransV1_0002778; Name=g.arboreum_cottongen_reftransV1_0002778; organism=Gossypium arboreum; type=contig; length=471bp
GTTCAATAAATGAGCTTGCATGGAAACCATCTTCGACCGTGTCAAGCTGT
CTTATCGGTTCAAGAGTAGGTCGGTGCCATGGCTTTGGATCCCATAGTAT
GGTACTGTTGAAGGCAAACCCTGACATTTCAGCATGGAATCTTTGGAATC
GCTTGCTTAATCCATTTAGGTGCCATCCAATGACTTGAGTTCCATTACAA
ACAGGGCCTTCCAATACAGCTCTACTTTTGTCCGATGTTTGTTTGGCCAC
AGGCCAAGTCCCAAACTGCCTAATATGCCTCATTTGCTCAAAGAGATCAA
TTGAGTAGATGTTATGTTCATTGGCAAAGTAGACAATTCCATCAAGATGA
TGAGTTTCGATGTGAGATAGTGCCACATTTCTTTGGTGAACACTTCTGTC
TTTTATATCAGTCAGATTTTTCTTGCAGACAAGATGCCTATACATAACAC
CGCTCCTTCTTAGGATGTCAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR029044	Nucleotide-diphossugar_trans
IPR005027	Glyco_trans_43

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity

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g.arboreum_cottongen_reftransV1_0002778, g.arboreum_cottongen_reftransV1_0002778 (contig) Gossypium arboreum

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