g.arboreum_cottongen_reftransV1_0002778, g.arboreum_cottongen_reftransV1_0002778 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0002778
Unique Name	g.arboreum_cottongen_reftransV1_0002778
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	471

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr1	chromosome	g.arboreum_cottongen_reftransV1_0002778:1..471 . Chr1:59000790..59001730 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0B0N0S9_GOSAR (Putative beta-1,4-xylosyltransferase IRX9H-like protein OS=Gossypium arboreum GN=F383_11501 PE=4 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.121e-111
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE
Sbjct:  238 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 393

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0D2Q9D0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G051500 PE=4 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 1.164e-110
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFA+EHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE
Sbjct:  238 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFADEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 393

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A061GJZ9_THECC (Glycosyl transferase isoform 1 OS=Theobroma cacao GN=TCM_037168 PE=4 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.958e-99
Identity = 141/156 (90.38%), Postives = 148/156 (94.87%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILRRS VMYRHLVCKKNLTDIKDR+VHQRNVALSHIETHHLDGIVYFANE NIYSIDLFEQMRHIR+FGTW VAKQT DKS A+LEGPVCNGTQVIGWHLNGLS+RF+RFHAEMSGFAFNSTILWDPK WHRPTLEP+RQLDTV+DGF AS FIE
Sbjct:  238 DILRRSSVMYRHLVCKKNLTDIKDRNVHQRNVALSHIETHHLDGIVYFANEDNIYSIDLFEQMRHIRRFGTWTVAKQTWDKSSAILEGPVCNGTQVIGWHLNGLSRRFRRFHAEMSGFAFNSTILWDPKRWHRPTLEPVRQLDTVKDGFQASLFIE 393

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0D2RCB1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G290300 PE=4 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.343e-93
Identity = 130/155 (83.87%), Postives = 143/155 (92.26%), Query Frame = -3

Query:    2 ILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 466
            ILR+SG+MYRHLVCKKNLTDIKDR+VHQRNVALSHIETH LDGIVYFA+E+N+YSIDLFEQMRHIRQFGTW VAKQT D +R  LEGPVCNGT+VIGWHLN LSKR++RFHAEM GFAFNSTILWDP+ WHRPTLE IRQL+TV+DGF ASS IE
Sbjct:   97 ILRKSGIMYRHLVCKKNLTDIKDRNVHQRNVALSHIETHRLDGIVYFADEYNVYSIDLFEQMRHIRQFGTWTVAKQTQDNNRVTLEGPVCNGTKVIGWHLNELSKRYRRFHAEMPGFAFNSTILWDPRRWHRPTLEQIRQLETVKDGFQASSIIE 251

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0D2S7S1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G290300 PE=4 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 3.250e-93
Identity = 130/155 (83.87%), Postives = 143/155 (92.26%), Query Frame = -3

Query:    2 ILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 466
            ILR+SG+MYRHLVCKKNLTDIKDR+VHQRNVALSHIETH LDGIVYFA+E+N+YSIDLFEQMRHIRQFGTW VAKQT D +R  LEGPVCNGT+VIGWHLN LSKR++RFHAEM GFAFNSTILWDP+ WHRPTLE IRQL+TV+DGF ASS IE
Sbjct:  130 ILRKSGIMYRHLVCKKNLTDIKDRNVHQRNVALSHIETHRLDGIVYFADEYNVYSIDLFEQMRHIRQFGTWTVAKQTQDNNRVTLEGPVCNGTKVIGWHLNELSKRYRRFHAEMPGFAFNSTILWDPRRWHRPTLEQIRQLETVKDGFQASSIIE 284

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0D2PJW5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G290300 PE=4 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 1.624e-91
Identity = 130/155 (83.87%), Postives = 143/155 (92.26%), Query Frame = -3

Query:    2 ILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 466
            ILR+SG+MYRHLVCKKNLTDIKDR+VHQRNVALSHIETH LDGIVYFA+E+N+YSIDLFEQMRHIRQFGTW VAKQT D +R  LEGPVCNGT+VIGWHLN LSKR++RFHAEM GFAFNSTILWDP+ WHRPTLE IRQL+TV+DGF ASS IE
Sbjct:  238 ILRKSGIMYRHLVCKKNLTDIKDRNVHQRNVALSHIETHRLDGIVYFADEYNVYSIDLFEQMRHIRQFGTWTVAKQTQDNNRVTLEGPVCNGTKVIGWHLNELSKRYRRFHAEMPGFAFNSTILWDPRRWHRPTLEQIRQLETVKDGFQASSIIE 392

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A0A0B0P497_GOSAR (Putative beta-1,4-xylosyltransferase IRX9H-like protein OS=Gossypium arboreum GN=F383_07417 PE=4 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 4.939e-91
Identity = 129/156 (82.69%), Postives = 143/156 (91.67%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            +ILR+SG+MYRHLVCKKNLTDIKDR+VHQRNVALSHIETH LDGIVYFA+E+N+YSIDLF+QMRHIRQFGTW VAKQT D  R  LEGPVCNGT+VIGWHLN LSKR++RFHAEM GFAFNSTILWDP+ WHRPTLE IRQL+TV+DGF ASS IE
Sbjct:  237 NILRKSGIMYRHLVCKKNLTDIKDRNVHQRNVALSHIETHRLDGIVYFADEYNVYSIDLFQQMRHIRQFGTWTVAKQTQDNDRVTLEGPVCNGTKVIGWHLNELSKRYRRFHAEMPGFAFNSTILWDPRRWHRPTLEQIRQLETVKDGFQASSIIE 392

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: B9H905_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25690g PE=4 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.365e-85
Identity = 122/156 (78.21%), Postives = 138/156 (88.46%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            DILRR+GVMYRHLVC KNLTDIKDRSVHQRNVALSHIE HHLDGIV+FA+++N YS DLFEQMR IR+FGTW VAK T +K++  +EGP+CNGTQVIGWH+N   +RF+RFHA+MSGFAFNSTI+WDPK WHRPT EPIRQLDTV DGF  SSFIE
Sbjct:  237 DILRRTGVMYRHLVCNKNLTDIKDRSVHQRNVALSHIEIHHLDGIVHFADDYNTYSADLFEQMRQIRRFGTWTVAKLTGNKNKDFVEGPICNGTQVIGWHVNDSRRRFRRFHADMSGFAFNSTIIWDPKRWHRPTPEPIRQLDTVRDGFQVSSFIE 392

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: V4UNC6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008306mg PE=4 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.621e-85
Identity = 119/156 (76.28%), Postives = 139/156 (89.10%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            D+LRR+GVMYRHLVCKKNLTD+KD  VHQRNVALSHIE HHLDGIVYFA+E+NIY  DLFE++R IR+FGTW VAK + +K   +LEGP+CNGT+VIGWH+N   +RF+RFHAEMSGFAFNSTILWDPK WHRPTLEPIRQ+DTV+DGF AS+F+E
Sbjct:  235 DVLRRTGVMYRHLVCKKNLTDVKDTRVHQRNVALSHIENHHLDGIVYFADENNIYLTDLFEELRQIRRFGTWTVAKLSENKMDTILEGPICNGTRVIGWHVNEPRERFRRFHAEMSGFAFNSTILWDPKRWHRPTLEPIRQVDTVKDGFQASTFVE 390

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Match: A5BYD9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024403 PE=4 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 1.253e-84
Identity = 117/156 (75.00%), Postives = 135/156 (86.54%), Query Frame = -3

Query:    2 DILRRSGVMYRHLVCKKNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGFHASSFIE 469
            D+L R+GVMYRHL+C KNLTDIKDR VH RN ALSHIETH LDG VYFA++ NIYS+DLFEQ+R IR+FGTW VAK    KS+ +LEGPVCNG+QVIGWH N +++RF+RFH EMSGFAFNSTILWDPK WHRPTLEPIRQLDTV++GF  S+FIE
Sbjct:   60 DMLMRTGVMYRHLMCNKNLTDIKDRGVHLRNTALSHIETHRLDGTVYFADDDNIYSVDLFEQIRQIRRFGTWMVAKLMESKSKTLLEGPVCNGSQVIGWHTNEMTRRFRRFHTEMSGFAFNSTILWDPKRWHRPTLEPIRQLDTVKEGFQVSTFIE 215

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3G2P_DROME (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P OS=Drosophila melanogaster GN=GlcAT-P PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.708e-14
Identity = 45/152 (29.61%), Postives = 74/152 (48.68%), Query Frame = -3

Query:   23 LRRSGVMYRHLVCK-----KNLTDIKDRSVHQRNVALSHIETHHLDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWDPKPWHRPTLEPIRQLDTVEDGF 463
            L R GV Y ++V       K     K R V  RN  L ++  H  +G++YFA++ N Y I +FEQMR+I +   WPV   T    +  +  P+    +++G++   +  R  ++  +M+GFA +   L +     RP  +   +    EDGF
Sbjct:  281 LDRIGVPYEYMVAPMPEKYKQTKKAKPRGVSNRNRGLEYLREHATEGVLYFADDDNTYDISIFEQMRYISKVAMWPVGLVT----KTGVSSPIIQAGKLVGYYDGWIGGR--KYPVDMAGFAVSVKFLKE-----RPNAQMPFKPGYEEDGF 421

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA1_CANFA (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 OS=Canis familiaris GN=B3GAT1 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.936e-11
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -3

Query:  107 ILRRSGVMYRHLVCK-----KNLTDIKD----RSVHQRNVALSHI-ETHHLD----GIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGT-QVIGWHLNGLSKRFQRFHAEMSGFAFN 466
            +LR +G+ Y HL  +     K   D +D    R   QRN+AL  + ET   +    G+VYFA++ N YS++LFE+MR  R+   WPVA     +     E P  NG  +V+GW    +    + F  +M+GFA N
Sbjct:  134 LLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLR----YEAPRVNGAGKVVGW--KTVFDPHRPFAIDMAGFAVN 262

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA1_HUMAN (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 OS=Homo sapiens GN=B3GAT1 PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.018e-11
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -3

Query:  107 ILRRSGVMYRHLVCK-----KNLTDIKD----RSVHQRNVALSHI-ETHHLD----GIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGT-QVIGWHLNGLSKRFQRFHAEMSGFAFN 466
            +LR +G+ Y HL  +     K   D +D    R   QRN+AL  + ET   +    G+VYFA++ N YS++LFE+MR  R+   WPVA     +     E P  NG  +V+GW    +    + F  +M+GFA N
Sbjct:  133 LLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLR----YEAPRVNGAGKVVGW--KTVFDPHRPFAIDMAGFAVN 261

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA1_RAT (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 OS=Rattus norvegicus GN=B3gat1 PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.223e-11
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -3

Query:  107 ILRRSGVMYRHLVCK-----KNLTDIKD----RSVHQRNVALSHI-ETHHLD----GIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGT-QVIGWHLNGLSKRFQRFHAEMSGFAFN 466
            +LR +G+ Y HL  +     K   D +D    R   QRN+AL  + ET   +    G+VYFA++ N YS++LFE+MR  R+   WPVA     +     E P  NG  +V+GW    +    + F  +M+GFA N
Sbjct:  133 LLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSTQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLR----YEAPRVNGAGKVVGW--KTVFDPHRPFAIDMAGFAVN 261

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA1_MOUSE (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 OS=Mus musculus GN=B3gat1 PE=2 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.333e-11
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = -3

Query:  107 ILRRSGVMYRHLVCK-----KNLTDIKD----RSVHQRNVALSHI-ETHHLD----GIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGT-QVIGWHLNGLSKRFQRFHAEMSGFAFN 466
            +LR +G+ Y HL  +     K   D +D    R   QRN+AL  + ET   +    G+VYFA++ N YS++LFE+MR  R+   WPVA     +     E P  NG  +V+GW    +    + F  +M+GFA N
Sbjct:  133 LLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSTQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLR----YEAPRVNGAGKVVGW--KTVFDPHRPFAIDMAGFAVN 261

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA2_CANFA (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 OS=Canis familiaris GN=B3GAT2 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.016e-10
Identity = 40/136 (29.41%), Postives = 67/136 (49.26%), Query Frame = -3

Query:   83 LRRSGVMYRHL---VCKKNLTDIKDRSVHQRNVALSHIETHHL-----DGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFN-STILWDPK 463
            L R+G+   HL     ++       R+  QRN  L+ +   H       G+++FA++ N YS++LF++MR  R+   WPV      +     E P+    +V+GW+    + R   F  +M+GFA +   IL +PK
Sbjct:  136 LARAGLPSTHLHVPTPRRYKRPGLPRATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRR----YERPLVENGKVVGWYTGWRADR--PFAIDMAGFAVSLQVILSNPK 265

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA2_HUMAN (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 OS=Homo sapiens GN=B3GAT2 PE=1 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 1.127e-10
Identity = 41/137 (29.93%), Postives = 70/137 (51.09%), Query Frame = -3

Query:   29 RSVHQRNVALSHIETHHL-----DGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFN-STILWDPKP-WHRPTLEP-------IRQLDTVED 397
            R+  QRN  L+ +   H       G+++FA++ N YS++LF++MR  R+   WPV      +     E P+    +V+GW+    + R   F  +M+GFA +   IL +PK  + R   +P       ++Q+ TVE+
Sbjct:  155 RATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRR----YERPLVENGKVVGWYTGWRADR--PFAIDMAGFAVSLQVILSNPKAVFKRRGSQPGMQESDFLKQITTVEE 285

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA2_MOUSE (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 OS=Mus musculus GN=B3gat2 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.022e-10
Identity = 35/111 (31.53%), Postives = 57/111 (51.35%), Query Frame = -3

Query:   83 RSVHQRNVALSHIETHHL-----DGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFN-STILWDPK 397
            R+  QRN  L+ +   H       G+++FA++ N YS++LF++MR  R+   WPV      +     E P+    +V+GW+      R   F  +M+GFA +   IL +PK
Sbjct:  156 RATEQRNAGLAWLRQRHQHQSAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRR----YERPLVKNGKVVGWYTGWREDR--PFAIDMAGFAVSLQVILSNPK 260

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA2_RAT (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 OS=Rattus norvegicus GN=B3gat2 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.061e-10
Identity = 35/111 (31.53%), Postives = 57/111 (51.35%), Query Frame = -3

Query:   83 RSVHQRNVALSHIETHHL-----DGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFN-STILWDPK 397
            R+  QRN  L+ +   H       G+++FA++ N YS++LF++MR  R+   WPV      +     E P+    +V+GW+      R   F  +M+GFA +   IL +PK
Sbjct:  156 RATEQRNAGLAWLRQRHQHQSAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRR----YERPLVKNGKVVGWYTGWREDR--PFAIDMAGFAVSLQVILSNPK 260

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Match: B3GA3_HUMAN (Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 OS=Homo sapiens GN=B3GAT3 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 6.942e-10
Identity = 45/148 (30.41%), Postives = 65/148 (43.92%), Query Frame = -3

Query:   89 ILRRSGVMYRHLVC----KKNLTD-----IKDRSVHQRNVALSHIETHH-------------LDGIVYFANEHNIYSIDLFEQMRHIRQFGTWPVAKQTSDKSRAVLEGPVCNGTQVIGWHLNGLSKRFQRFHAEMSGFAFNSTILWD 466
            +L  SG+++ HLV      + L +     +  R V QRN AL  +                   G+VYFA++ N YS +LFE+MR  R    WPV      +     EGP     +V+G+H      R   F  +M+GFA    +L D
Sbjct:  124 LLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLR----FEGPQVQDGRVVGFHTAWEPSR--PFPVDMAGFAVALPLLLD 265

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0N0S9_GOSAR	2.121e-111	100.00	Putative beta-1,4-xylosyltransferase IRX9H-like pr...	[more]
A0A0D2Q9D0_GOSRA	1.164e-110	99.36	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061GJZ9_THECC	2.958e-99	90.38	Glycosyl transferase isoform 1 OS=Theobroma cacao ...	[more]
A0A0D2RCB1_GOSRA	1.343e-93	83.87	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2S7S1_GOSRA	3.250e-93	83.87	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2PJW5_GOSRA	1.624e-91	83.87	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0P497_GOSAR	4.939e-91	82.69	Putative beta-1,4-xylosyltransferase IRX9H-like pr...	[more]
B9H905_POPTR	2.365e-85	78.21	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
V4UNC6_9ROSI	2.621e-85	76.28	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A5BYD9_VITVI	1.253e-84	75.00	Putative uncharacterized protein OS=Vitis vinifera...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0002778 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
B3G2P_DROME	1.708e-14	29.61	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA1_CANFA	1.936e-11	35.56	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA1_HUMAN	2.018e-11	35.56	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA1_RAT	2.223e-11	35.56	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA1_MOUSE	2.333e-11	35.56	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA2_CANFA	1.016e-10	29.41	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA2_HUMAN	1.127e-10	29.93	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA2_MOUSE	2.022e-10	31.53	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA2_RAT	2.061e-10	31.53	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]
B3GA3_HUMAN	6.942e-10	30.41	Galactosylgalactosylxylosylprotein 3-beta-glucuron...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029044	Nucleotide-diphospho-sugar transferases	GENE3D	3.90.550.10		coord: 1..148 e-value: 5.4E-46 score: 156.2
IPR029044	Nucleotide-diphospho-sugar transferases	SUPERFAMILY	53448	Nucleotide-diphospho-sugar transferases	coord: 1..146
IPR005027	Glycosyl transferase, family 43	PFAM	PF03360	Glyco_transf_43	coord: 1..147 e-value: 1.5E-41 score: 142.3
IPR005027	Glycosyl transferase, family 43	PANTHER	PTHR10896	GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE	coord: 1..148
None	No IPR available	PANTHER	PTHR10896:SF27	SUBFAMILY NOT NAMED	coord: 1..148

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0002778 ID=g.arboreum_cottongen_reftransV1_0002778; Name=g.arboreum_cottongen_reftransV1_0002778; organism=Gossypium arboreum; type=contig; length=471bp
GTTCAATAAATGAGCTTGCATGGAAACCATCTTCGACCGTGTCAAGCTGT
CTTATCGGTTCAAGAGTAGGTCGGTGCCATGGCTTTGGATCCCATAGTAT
GGTACTGTTGAAGGCAAACCCTGACATTTCAGCATGGAATCTTTGGAATC
GCTTGCTTAATCCATTTAGGTGCCATCCAATGACTTGAGTTCCATTACAA
ACAGGGCCTTCCAATACAGCTCTACTTTTGTCCGATGTTTGTTTGGCCAC
AGGCCAAGTCCCAAACTGCCTAATATGCCTCATTTGCTCAAAGAGATCAA
TTGAGTAGATGTTATGTTCATTGGCAAAGTAGACAATTCCATCAAGATGA
TGAGTTTCGATGTGAGATAGTGCCACATTTCTTTGGTGAACACTTCTGTC
TTTTATATCAGTCAGATTTTTCTTGCAGACAAGATGCCTATACATAACAC
CGCTCCTTCTTAGGATGTCAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR029044	Nucleotide-diphossugar_trans
IPR005027	Glyco_trans_43

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity

Search form

g.arboreum_cottongen_reftransV1_0002778, g.arboreum_cottongen_reftransV1_0002778 (contig) Gossypium arboreum

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