g.arboreum_cottongen_reftransV1_0021561, g.arboreum_cottongen_reftransV1_0021561 (contig) Gossypium arboreum
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: I1N798_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 763.451 bits (1970), Expect = 0.000e+0 Identity = 425/545 (77.98%), Postives = 472/545 (86.61%), Query Frame = -2 Query: 556 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQ----AQLSAGF------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 2160 MS+N NNP K +GASSS FGNAG+ +P NP FSQ AQ+ G+ + + QAQ+ AQAQ++AQA A AHAQLQAHLQAQGLSLNQ Q G G SSP +STPG+AS KRI +PPMRP G N+ SPLR +ELT AARRKKQKLPEKQLQD+VAAILPESALYTQLLEFE+RVDAALARKK DIQEALKNPPC+QKTLRIYVFNTFANQI+TIP+KPNAE PTWTLKI+GRILEDGVDPDQPG VQ+++PLYPKFS+FFKRVTISLDQ+LYPDNHII+WE+ARSP P+EGFEVKRKGDKEFTVNIRLEMNYVPEKFKLS AL EVLGIEVDTRPRI+AAIWHYVKARKLQNP DPS+F+CD L KVFGE+++KFTMVSQKIS HL PP PI LEHKIKLSGN+PAG ACYDV+VDVPFPIQRELSALLAN EK+KEI+ CDEAIC IRKIH+H RRRAFFLGFSQSPVEFINAL++SQS+DLK+V+GEPSR+AEKERRSDFFNQ WVEDAVIRYLNRKP GSDAPGS Sbjct: 1 MSVNNNNPSKGIGASSSSFGNAGVPSNSIPSNPGFSQSQGQAQIPVGYQGQFPLSQAHAIVQAQSKAQAQAQAQAAAAAHAQLQAHLQAQGLSLNQNQAGGLGV---SSPLISTPGNASGKRIPLKPPMRPVGFSPPNSFSPLRPVELTPAARRKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKADIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPNAELPTWTLKIVGRILEDGVDPDQPGVVQKSSPLYPKFSAFFKRVTISLDQRLYPDNHIIMWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSYFHCDQPLLKVFGEEKMKFTMVSQKISSHLFPPQPILLEHKIKLSGNNPAGTACYDVMVDVPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKLVSGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPAVGSDAPGS 542
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: A0A0B2RZ98_GLYSO (SWI/SNF complex component SNF12 like OS=Glycine soja GN=glysoja_048922 PE=4 SV=1) HSP 1 Score: 763.451 bits (1970), Expect = 0.000e+0 Identity = 425/545 (77.98%), Postives = 472/545 (86.61%), Query Frame = -2 Query: 556 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQ----AQLSAGF------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 2160 MS+N NNP K +GASSS FGNAG+ +P NP FSQ AQ+ G+ + + QAQ+ AQAQ++AQA A AHAQLQAHLQAQGLSLNQ Q G G SSP +STPG+AS KRI +PPMRP G N+ SPLR +ELT AARRKKQKLPEKQLQD+VAAILPESALYTQLLEFE+RVDAALARKK DIQEALKNPPC+QKTLRIYVFNTFANQI+TIP+KPNAE PTWTLKI+GRILEDGVDPDQPG VQ+++PLYPKFS+FFKRVTISLDQ+LYPDNHII+WE+ARSP P+EGFEVKRKGDKEFTVNIRLEMNYVPEKFKLS AL EVLGIEVDTRPRI+AAIWHYVKARKLQNP DPS+F+CD L KVFGE+++KFTMVSQKIS HL PP PI LEHKIKLSGN+PAG ACYDV+VDVPFPIQRELSALLAN EK+KEI+ CDEAIC IRKIH+H RRRAFFLGFSQSPVEFINAL++SQS+DLK+V+GEPSR+AEKERRSDFFNQ WVEDAVIRYLNRKP GSDAPGS Sbjct: 1 MSVNNNNPSKGIGASSSSFGNAGVPSNSIPSNPGFSQSQGQAQIPVGYQGQFPLSQAHAIVQAQSKAQAQAQAQAAAAAHAQLQAHLQAQGLSLNQNQAGGLGV---SSPLISTPGNASGKRIPLKPPMRPVGFSPPNSFSPLRPVELTPAARRKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKADIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPNAELPTWTLKIVGRILEDGVDPDQPGVVQKSSPLYPKFSAFFKRVTISLDQRLYPDNHIIMWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSYFHCDQPLLKVFGEEKMKFTMVSQKISSHLFPPQPILLEHKIKLSGNNPAGTACYDVMVDVPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKLVSGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPAVGSDAPGS 542
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: B9S7A2_RICCO (Brg-1 associated factor, putative OS=Ricinus communis GN=RCOM_0774970 PE=4 SV=1) HSP 1 Score: 759.214 bits (1959), Expect = 0.000e+0 Identity = 386/455 (84.84%), Postives = 421/455 (92.53%), Query Frame = -2 Query: 556 GLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 1920 GLSL+QAQNAG LGSSSPS +TPGS +AKR+ Q+PP+RPPGVPM N +SPL+ M+LT AARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAAL RKKVDIQEALK+PPC QKTLRIYVFNTFANQI+TIP+KPNA+PPTWTLKI+GRILEDG+DPDQPG VQ++NPLYPKFSSFFKRVTI LDQ+LYPDNH+I+WEH+R+P P+EGFEVKRKGDKEFTV IRLEMNYVPEK+KLS ALMEVLGIEVDTRPRIIAAIWHYVKARKLQNP DPSFFNCD L KVFGE ++KFTMVSQKISQHLS P PI LEHKIKLSGNSPAG ACYDV+VDVPFPIQRELS LLAN EK+KEID CDEAIC+ IRKIH+H RRRAFFLGFSQSPVEFINAL++SQS+DLK+VAGE SRSAEKERR+DFFNQ WVEDAVIRYLNRKP AGSDAPGS Sbjct: 117 GLSLSQAQNAGIANLGSSSPSFTTPGSMNAKRLPQKPPVRPPGVPMANMISPLKNMDLTPAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALNRKKVDIQEALKSPPCTQKTLRIYVFNTFANQIRTIPKKPNADPPTWTLKIVGRILEDGIDPDQPGVVQKSNPLYPKFSSFFKRVTIMLDQRLYPDNHMIVWEHSRTPAPHEGFEVKRKGDKEFTVTIRLEMNYVPEKYKLSPALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPEDPSFFNCDPPLHKVFGEAKMKFTMVSQKISQHLSSPQPIVLEHKIKLSGNSPAGTACYDVVVDVPFPIQRELSTLLANAEKNKEIDTCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKLVAGEGSRSAEKERRADFFNQPWVEDAVIRYLNRKPTAGSDAPGS 571
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: D7M610_ARALL (SWIB complex BAF60b domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_488249 PE=4 SV=1) HSP 1 Score: 756.518 bits (1952), Expect = 0.000e+0 Identity = 409/537 (76.16%), Postives = 469/537 (87.34%), Query Frame = -2 Query: 556 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQAQLSAGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNA-GFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXX-XXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 2160 MS N NNP K G++ SPFGN GM +PGN F+Q+Q++A +Q + AQA + AQAQ++ AQLQA LQAQG+++NQAQ + G G LG SSPS++TPGS + KR Q+PPMRPPG NT+SP+RTMELT AAR+KKQKLPEK LQ+RVAAILPESALYTQLLEFE+RVDAAL RKKVDIQEALKNPPC+QKTLRIYVFN+FANQ TIP PNA+PPTWTLKIIGRILEDGVDPDQPGFVQ+ NPL+PKFSSFFKRVT+SLDQ+LYP+N +IIWE+ARSP P EGFE+KRKG++EF +IRLEMNYVPEKFKLS+ALM+VLGIEV+TRPRIIAAIWHYVKARKLQNP DPSFFNCDA LQKVFGE+++KFTMVSQKIS HLSPPPPIHLEHKIKLSGN+PA +ACYDVLVDVPFPIQR+L+ LLAN EK+KEI+ACDEAICA IRKIH+H RRRAFFLGFSQSPVEFINAL++SQS+DLK+VAGE SR+AE+ERRSDFFNQ WVEDAVIRYLNR+P AG+D PGS Sbjct: 1 MSGNNNNPQKPQGSAPSPFGNPGMASASVPGNQGFAQSQMAAN----FQAQFQFSQAQALAHAQAQSKVQAQLQAQLQAQGMTMNQAQGSPGIGGLGPSSPSLTTPGSLNMKRFQQKPPMRPPGAPASNNTISPMRTMELTPAARKKKQKLPEKSLQERVAAILPESALYTQLLEFESRVDAALTRKKVDIQEALKNPPCIQKTLRIYVFNSFANQNNTIPGNPNADPPTWTLKIIGRILEDGVDPDQPGFVQKANPLHPKFSSFFKRVTVSLDQRLYPENPLIIWENARSPAPQEGFEIKRKGNQEFAASIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPWVEDAVIRYLNRRPAAGNDGPGS 533
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: V7C2C2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G054400g PE=4 SV=1) HSP 1 Score: 756.518 bits (1952), Expect = 0.000e+0 Identity = 419/547 (76.60%), Postives = 466/547 (85.19%), Query Frame = -2 Query: 556 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQA----QLSAGF--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 2160 MS+N NNP K +GASSS FGNAG+ +P N FSQ+ Q+ GF +Q++A AQAQ+ AQA A AHAQ+QAHLQAQGLSLNQ Q G S +STPG+AS KRI +PP+RP G N+ SPLR MELT A+RRKKQKLPEKQLQD+VAAILPESALYTQLLEFE+RVDAALARKK DIQEALKNPPC+QKTLRIYVFNTFANQI+TIP+KP AEPPTWTLKI+GRILEDGVDPDQPG VQ++ PLYPKFS+FFKRVTISLDQ+LYPDNHII+WE+ARSP P+EGFEVKRKGDKEFTVNIRLEMNY+PEKFKLS AL EVLGIEVDTRPRI+AAIWHYVKARKLQNP DPSFF+CD LQKVFGE+++KFTMVSQKIS HL PP PI LEHKIKLSGNSPAG ACYDV+VDVPFPIQRELSALLAN EK+KEI+ CDEAIC IRKIH+H RRR+FFLGFSQSPVEFINAL++SQS+DLK+V+GEPSR+AEKERRSDFFNQ WVEDAVIRYLNRKP GSDAPGS Sbjct: 1 MSVNNNNPSKGIGASSSSFGNAGISSNSIPTNLGFSQSQGPGQIPVGFQGQFPLSQAHAIVQAQSKAQAQAQAHAQAAAAAHAQIQAHLQAQGLSLNQNQGGG-LGSLGLSSPISTPGNASGKRIPLKPPIRPVGFSPPNSFSPLRPMELTPASRRKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKADIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPTAEPPTWTLKIVGRILEDGVDPDQPGVVQKSTPLYPKFSAFFKRVTISLDQRLYPDNHIIMWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYIPEKFKLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGEEKMKFTMVSQKISSHLFPPQPILLEHKIKLSGNSPAGTACYDVMVDVPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRSFFLGFSQSPVEFINALIESQSRDLKLVSGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPAVGSDAPGS 546
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SMRD2_BOVIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Bos taurus GN=SMARCD2 PE=3 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 6.612e-68 Identity = 137/404 (33.91%), Postives = 224/404 (55.45%), Query Frame = -2 Query: 595 AARR--KKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEP----------------PTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLY-PDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVA---GEPSRSAEKERRSDFFNQSWVEDAVIRYL 1740 A RR K++K+ +K L R+ ++PES Y LL FE ++D +ARK+++IQEA+K P ++ LRIY+ NTF+ P K + +W L++ G++L+D P +R KFSSFFK + I LD++LY PDNH++ W + +GF+VKR GD + L +++ P ++KL L +LG+ TR I+ A+W Y+K +LQ+ ++ + NC+ +++F R++F+ + K++ L P PI + H I + N ACYD+ V+V P++ ++S LA+ +EI + D I TI I+ +R F L FS P +FI ++SQ +DLK++ G P E+ERR+ F++Q W ++AV R++ Sbjct: 130 AQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFS------PSKAEGDTAGTTGTPGGTPAGDKVASWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNP----EEERRAAFYHQPWAQEAVGRHI 511
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SNF12_DICDI (SWI/SNF complex component SNF12 homolog OS=Dictyostelium discoideum GN=snf12-1 PE=3 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 1.474e-58 Identity = 116/381 (30.45%), Postives = 210/381 (55.12%), Query Frame = -2 Query: 586 DRVAAILPESALYTQLLEFEARVDAALARKKVDIQEA-LKNPPCVQKTLRIYVFNTFANQ-----IKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYP-----KFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRK 1695 + + + PE L++QLLEFE ++DA++ ++ +DIQEA +N +TLR+ ++NT++NQ + E P+W+L++ G++L++ D ++ ++ KFSSFFK+V I + + W+ +++ T +GFE+KR G++E + I + +++VP+K+K+ L ++L I DT+PRII A+WHY+K+ L + + CD L+ +F + ++F + Q + +HLSPP P+ ++ + LSG++ YD+ V+V PI N KEI ++ I I+K++ H R+R F S P+ F+N + +D ++ S E+ER + F+ Q E+ V YL+++ Sbjct: 68 EELISFAPECLLFSQLLEFEEKLDASINKRLIDIQEASRRNSIKNIRTLRLSIYNTYSNQSAYYHLDNKSLNSVQERPSWSLRVEGKLLDESQDELVNKSIKSSSSSSSTANKRKFSSFFKKVFIQIGHR-----DTCEWDKSQTFTETDGFEIKRNGNQEVDIKILMYLDHVPQKYKVLGGLSQLLNIHTDTKPRIILALWHYIKSNTLLDA-ETKKITCDENLKNIFSLEELQFNQIPQLLREHLSPPDPLEFQYTLHLSGDAKDYEQAYDIQVEVDEPI------FNPNPTMRKEISQLNDEINHHIQKVYQHKRKREFMEKLSSDPLGFLNDTTANLVKDFQVSKSTTSTGFEEERHASFYYQPMTEELVKNYLSKQ 436
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SSR3_SCHPO (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 1.782e-55 Identity = 121/396 (30.56%), Postives = 208/396 (52.53%), Query Frame = -2 Query: 592 AARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQI---KTIPQKPNAEP------PTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISL--DQKLYPDNHIIIWEHA--RSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLN 1740 A +K ++ E+++ D + +PE+ Y L + E ++D+ + RK+ D+Q++L + LR+Y+ +T ANQ K Q+ N+ P WTL I GR+L + D D F L P F++FF+++ I + LYP + + W S T N G V RKGD+ V I L PE++KLS A +LGI TRP I++ +W Y+K +LQ+ + NCD L+ +F DR+ F + + +++ L P PI + + I +S ++ +D+ ++ P ++ + LA +I + D+ + I+ I + F FS+SP+EFIN ++SQS+DL++V + + ++R +D++ Q WV ++ YLN Sbjct: 20 AELKKSMRIIEREIPDSLLEKIPEAEDYIALQDLERKLDSLIVRKRFDLQDSLSRNSHKTRILRMYIHSTVANQSWQQKGENQENNSGDINSLPIPEWTLHIEGRLLVNPDDEDDKAF-----ELAP-FTNFFRKIAIQILRSDDLYPSGNYVEWNKLPDNSNTSN-GITVTRKGDQSVDVKIMLYPEEHPERYKLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEADRLYFPRIPELMNRFLEPIDPIVIPYTINVSEHTVEKVTIFDIRINTEDPRHSQIRSFLATMMSQDKIRSIDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTNMNYAEKRSADYYQQPWVHESAFHYLN 408
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 4.411e-7 Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = -2 Query: 1015 FKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVK-FTM 1200 KLS L E LG+E +RP+ + +W Y+KA LQ+P D CD +L+ VF D + FTM Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMFTM 183 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 14
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0021561 ID=g.arboreum_cottongen_reftransV1_0021561; Name=g.arboreum_cottongen_reftransV1_0021561; organism=Gossypium arboreum; type=contig; length=2287bpback to top |