g.arboreum_cottongen_reftransV1_0021561, g.arboreum_cottongen_reftransV1_0021561 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0021561
Unique Nameg.arboreum_cottongen_reftransV1_0021561
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length2287
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: I1N798_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 763.451 bits (1970), Expect = 0.000e+0
Identity = 425/545 (77.98%), Postives = 472/545 (86.61%), Query Frame = -2
Query:  556 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQ----AQLSAGF------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 2160
            MS+N NNP K +GASSS FGNAG+    +P NP FSQ    AQ+  G+         + + QAQ+ AQAQ++AQA A AHAQLQAHLQAQGLSLNQ Q  G G    SSP +STPG+AS KRI  +PPMRP G    N+ SPLR +ELT AARRKKQKLPEKQLQD+VAAILPESALYTQLLEFE+RVDAALARKK DIQEALKNPPC+QKTLRIYVFNTFANQI+TIP+KPNAE PTWTLKI+GRILEDGVDPDQPG VQ+++PLYPKFS+FFKRVTISLDQ+LYPDNHII+WE+ARSP P+EGFEVKRKGDKEFTVNIRLEMNYVPEKFKLS AL EVLGIEVDTRPRI+AAIWHYVKARKLQNP DPS+F+CD  L KVFGE+++KFTMVSQKIS HL PP PI LEHKIKLSGN+PAG ACYDV+VDVPFPIQRELSALLAN EK+KEI+ CDEAIC  IRKIH+H RRRAFFLGFSQSPVEFINAL++SQS+DLK+V+GEPSR+AEKERRSDFFNQ WVEDAVIRYLNRKP  GSDAPGS
Sbjct:    1 MSVNNNNPSKGIGASSSSFGNAGVPSNSIPSNPGFSQSQGQAQIPVGYQGQFPLSQAHAIVQAQSKAQAQAQAQAAAAAHAQLQAHLQAQGLSLNQNQAGGLGV---SSPLISTPGNASGKRIPLKPPMRPVGFSPPNSFSPLRPVELTPAARRKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKADIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPNAELPTWTLKIVGRILEDGVDPDQPGVVQKSSPLYPKFSAFFKRVTISLDQRLYPDNHIIMWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSYFHCDQPLLKVFGEEKMKFTMVSQKISSHLFPPQPILLEHKIKLSGNNPAGTACYDVMVDVPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKLVSGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPAVGSDAPGS 542          
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: A0A0B2RZ98_GLYSO (SWI/SNF complex component SNF12 like OS=Glycine soja GN=glysoja_048922 PE=4 SV=1)

HSP 1 Score: 763.451 bits (1970), Expect = 0.000e+0
Identity = 425/545 (77.98%), Postives = 472/545 (86.61%), Query Frame = -2
Query:  556 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQ----AQLSAGF------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 2160
            MS+N NNP K +GASSS FGNAG+    +P NP FSQ    AQ+  G+         + + QAQ+ AQAQ++AQA A AHAQLQAHLQAQGLSLNQ Q  G G    SSP +STPG+AS KRI  +PPMRP G    N+ SPLR +ELT AARRKKQKLPEKQLQD+VAAILPESALYTQLLEFE+RVDAALARKK DIQEALKNPPC+QKTLRIYVFNTFANQI+TIP+KPNAE PTWTLKI+GRILEDGVDPDQPG VQ+++PLYPKFS+FFKRVTISLDQ+LYPDNHII+WE+ARSP P+EGFEVKRKGDKEFTVNIRLEMNYVPEKFKLS AL EVLGIEVDTRPRI+AAIWHYVKARKLQNP DPS+F+CD  L KVFGE+++KFTMVSQKIS HL PP PI LEHKIKLSGN+PAG ACYDV+VDVPFPIQRELSALLAN EK+KEI+ CDEAIC  IRKIH+H RRRAFFLGFSQSPVEFINAL++SQS+DLK+V+GEPSR+AEKERRSDFFNQ WVEDAVIRYLNRKP  GSDAPGS
Sbjct:    1 MSVNNNNPSKGIGASSSSFGNAGVPSNSIPSNPGFSQSQGQAQIPVGYQGQFPLSQAHAIVQAQSKAQAQAQAQAAAAAHAQLQAHLQAQGLSLNQNQAGGLGV---SSPLISTPGNASGKRIPLKPPMRPVGFSPPNSFSPLRPVELTPAARRKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKADIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPNAELPTWTLKIVGRILEDGVDPDQPGVVQKSSPLYPKFSAFFKRVTISLDQRLYPDNHIIMWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSYFHCDQPLLKVFGEEKMKFTMVSQKISSHLFPPQPILLEHKIKLSGNNPAGTACYDVMVDVPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKLVSGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPAVGSDAPGS 542          
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: B9S7A2_RICCO (Brg-1 associated factor, putative OS=Ricinus communis GN=RCOM_0774970 PE=4 SV=1)

HSP 1 Score: 759.214 bits (1959), Expect = 0.000e+0
Identity = 386/455 (84.84%), Postives = 421/455 (92.53%), Query Frame = -2
Query:  556 GLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 1920
            GLSL+QAQNAG   LGSSSPS +TPGS +AKR+ Q+PP+RPPGVPM N +SPL+ M+LT AARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAAL RKKVDIQEALK+PPC QKTLRIYVFNTFANQI+TIP+KPNA+PPTWTLKI+GRILEDG+DPDQPG VQ++NPLYPKFSSFFKRVTI LDQ+LYPDNH+I+WEH+R+P P+EGFEVKRKGDKEFTV IRLEMNYVPEK+KLS ALMEVLGIEVDTRPRIIAAIWHYVKARKLQNP DPSFFNCD  L KVFGE ++KFTMVSQKISQHLS P PI LEHKIKLSGNSPAG ACYDV+VDVPFPIQRELS LLAN EK+KEID CDEAIC+ IRKIH+H RRRAFFLGFSQSPVEFINAL++SQS+DLK+VAGE SRSAEKERR+DFFNQ WVEDAVIRYLNRKP AGSDAPGS
Sbjct:  117 GLSLSQAQNAGIANLGSSSPSFTTPGSMNAKRLPQKPPVRPPGVPMANMISPLKNMDLTPAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALNRKKVDIQEALKSPPCTQKTLRIYVFNTFANQIRTIPKKPNADPPTWTLKIVGRILEDGIDPDQPGVVQKSNPLYPKFSSFFKRVTIMLDQRLYPDNHMIVWEHSRTPAPHEGFEVKRKGDKEFTVTIRLEMNYVPEKYKLSPALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPEDPSFFNCDPPLHKVFGEAKMKFTMVSQKISQHLSSPQPIVLEHKIKLSGNSPAGTACYDVVVDVPFPIQRELSTLLANAEKNKEIDTCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKLVAGEGSRSAEKERRADFFNQPWVEDAVIRYLNRKPTAGSDAPGS 571          
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: D7M610_ARALL (SWIB complex BAF60b domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_488249 PE=4 SV=1)

HSP 1 Score: 756.518 bits (1952), Expect = 0.000e+0
Identity = 409/537 (76.16%), Postives = 469/537 (87.34%), Query Frame = -2
Query:  556 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQAQLSAGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNA-GFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXX-XXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 2160
            MS N NNP K  G++ SPFGN GM    +PGN  F+Q+Q++A     +Q     + AQA + AQAQ++  AQLQA LQAQG+++NQAQ + G G LG SSPS++TPGS + KR  Q+PPMRPPG     NT+SP+RTMELT AAR+KKQKLPEK LQ+RVAAILPESALYTQLLEFE+RVDAAL RKKVDIQEALKNPPC+QKTLRIYVFN+FANQ  TIP  PNA+PPTWTLKIIGRILEDGVDPDQPGFVQ+ NPL+PKFSSFFKRVT+SLDQ+LYP+N +IIWE+ARSP P EGFE+KRKG++EF  +IRLEMNYVPEKFKLS+ALM+VLGIEV+TRPRIIAAIWHYVKARKLQNP DPSFFNCDA LQKVFGE+++KFTMVSQKIS HLSPPPPIHLEHKIKLSGN+PA +ACYDVLVDVPFPIQR+L+ LLAN EK+KEI+ACDEAICA IRKIH+H RRRAFFLGFSQSPVEFINAL++SQS+DLK+VAGE SR+AE+ERRSDFFNQ WVEDAVIRYLNR+P AG+D PGS
Sbjct:    1 MSGNNNNPQKPQGSAPSPFGNPGMASASVPGNQGFAQSQMAAN----FQAQFQFSQAQALAHAQAQSKVQAQLQAQLQAQGMTMNQAQGSPGIGGLGPSSPSLTTPGSLNMKRFQQKPPMRPPGAPASNNTISPMRTMELTPAARKKKQKLPEKSLQERVAAILPESALYTQLLEFESRVDAALTRKKVDIQEALKNPPCIQKTLRIYVFNSFANQNNTIPGNPNADPPTWTLKIIGRILEDGVDPDQPGFVQKANPLHPKFSSFFKRVTVSLDQRLYPENPLIIWENARSPAPQEGFEIKRKGNQEFAASIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPWVEDAVIRYLNRRPAAGNDGPGS 533          
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: V7C2C2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G054400g PE=4 SV=1)

HSP 1 Score: 756.518 bits (1952), Expect = 0.000e+0
Identity = 419/547 (76.60%), Postives = 466/547 (85.19%), Query Frame = -2
Query:  556 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQA----QLSAGF--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 2160
            MS+N NNP K +GASSS FGNAG+    +P N  FSQ+    Q+  GF              +Q++A AQAQ+ AQA A AHAQ+QAHLQAQGLSLNQ Q  G       S  +STPG+AS KRI  +PP+RP G    N+ SPLR MELT A+RRKKQKLPEKQLQD+VAAILPESALYTQLLEFE+RVDAALARKK DIQEALKNPPC+QKTLRIYVFNTFANQI+TIP+KP AEPPTWTLKI+GRILEDGVDPDQPG VQ++ PLYPKFS+FFKRVTISLDQ+LYPDNHII+WE+ARSP P+EGFEVKRKGDKEFTVNIRLEMNY+PEKFKLS AL EVLGIEVDTRPRI+AAIWHYVKARKLQNP DPSFF+CD  LQKVFGE+++KFTMVSQKIS HL PP PI LEHKIKLSGNSPAG ACYDV+VDVPFPIQRELSALLAN EK+KEI+ CDEAIC  IRKIH+H RRR+FFLGFSQSPVEFINAL++SQS+DLK+V+GEPSR+AEKERRSDFFNQ WVEDAVIRYLNRKP  GSDAPGS
Sbjct:    1 MSVNNNNPSKGIGASSSSFGNAGISSNSIPTNLGFSQSQGPGQIPVGFQGQFPLSQAHAIVQAQSKAQAQAQAHAQAAAAAHAQIQAHLQAQGLSLNQNQGGG-LGSLGLSSPISTPGNASGKRIPLKPPIRPVGFSPPNSFSPLRPMELTPASRRKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKADIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPTAEPPTWTLKIVGRILEDGVDPDQPGVVQKSTPLYPKFSAFFKRVTISLDQRLYPDNHIIMWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYIPEKFKLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGEEKMKFTMVSQKISSHLFPPQPILLEHKIKLSGNSPAGTACYDVMVDVPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRSFFLGFSQSPVEFINALIESQSRDLKLVSGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPAVGSDAPGS 546          
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SMRD2_BOVIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Bos taurus GN=SMARCD2 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 6.612e-68
Identity = 137/404 (33.91%), Postives = 224/404 (55.45%), Query Frame = -2
Query:  595 AARR--KKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEP----------------PTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLY-PDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVA---GEPSRSAEKERRSDFFNQSWVEDAVIRYL 1740
            A RR  K++K+ +K L  R+  ++PES  Y  LL FE ++D  +ARK+++IQEA+K P   ++ LRIY+ NTF+      P K   +                  +W L++ G++L+D      P   +R      KFSSFFK + I LD++LY PDNH++ W    +    +GF+VKR GD      + L +++ P ++KL   L  +LG+   TR  I+ A+W Y+K  +LQ+ ++  + NC+   +++F   R++F+ +  K++  L  P PI + H I +  N     ACYD+ V+V  P++ ++S  LA+    +EI + D  I  TI  I+    +R F L FS  P +FI   ++SQ +DLK++    G P    E+ERR+ F++Q W ++AV R++
Sbjct:  130 AQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFS------PSKAEGDTAGTTGTPGGTPAGDKVASWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNP----EEERRAAFYHQPWAQEAVGRHI 511          
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SNF12_DICDI (SWI/SNF complex component SNF12 homolog OS=Dictyostelium discoideum GN=snf12-1 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.474e-58
Identity = 116/381 (30.45%), Postives = 210/381 (55.12%), Query Frame = -2
Query:  586 DRVAAILPESALYTQLLEFEARVDAALARKKVDIQEA-LKNPPCVQKTLRIYVFNTFANQ-----IKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYP-----KFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRK 1695
            + + +  PE  L++QLLEFE ++DA++ ++ +DIQEA  +N     +TLR+ ++NT++NQ     +         E P+W+L++ G++L++  D      ++ ++         KFSSFFK+V I +  +         W+ +++ T  +GFE+KR G++E  + I + +++VP+K+K+   L ++L I  DT+PRII A+WHY+K+  L +  +     CD  L+ +F  + ++F  + Q + +HLSPP P+  ++ + LSG++      YD+ V+V  PI         N    KEI   ++ I   I+K++ H R+R F    S  P+ F+N    +  +D ++     S   E+ER + F+ Q   E+ V  YL+++
Sbjct:   68 EELISFAPECLLFSQLLEFEEKLDASINKRLIDIQEASRRNSIKNIRTLRLSIYNTYSNQSAYYHLDNKSLNSVQERPSWSLRVEGKLLDESQDELVNKSIKSSSSSSSTANKRKFSSFFKKVFIQIGHR-----DTCEWDKSQTFTETDGFEIKRNGNQEVDIKILMYLDHVPQKYKVLGGLSQLLNIHTDTKPRIILALWHYIKSNTLLDA-ETKKITCDENLKNIFSLEELQFNQIPQLLREHLSPPDPLEFQYTLHLSGDAKDYEQAYDIQVEVDEPI------FNPNPTMRKEISQLNDEINHHIQKVYQHKRKREFMEKLSSDPLGFLNDTTANLVKDFQVSKSTTSTGFEEERHASFYYQPMTEELVKNYLSKQ 436          
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SSR3_SCHPO (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.782e-55
Identity = 121/396 (30.56%), Postives = 208/396 (52.53%), Query Frame = -2
Query:  592 AARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQI---KTIPQKPNAEP------PTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISL--DQKLYPDNHIIIWEHA--RSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLN 1740
            A  +K  ++ E+++ D +   +PE+  Y  L + E ++D+ + RK+ D+Q++L       + LR+Y+ +T ANQ    K   Q+ N+        P WTL I GR+L +  D D   F      L P F++FF+++ I +     LYP  + + W      S T N G  V RKGD+   V I L     PE++KLS A   +LGI   TRP I++ +W Y+K  +LQ+  +    NCD  L+ +F  DR+ F  + + +++ L P  PI + + I +S ++      +D+ ++   P   ++ + LA      +I + D+ +   I+ I     +  F   FS+SP+EFIN  ++SQS+DL++V    + +  ++R +D++ Q WV ++   YLN
Sbjct:   20 AELKKSMRIIEREIPDSLLEKIPEAEDYIALQDLERKLDSLIVRKRFDLQDSLSRNSHKTRILRMYIHSTVANQSWQQKGENQENNSGDINSLPIPEWTLHIEGRLLVNPDDEDDKAF-----ELAP-FTNFFRKIAIQILRSDDLYPSGNYVEWNKLPDNSNTSN-GITVTRKGDQSVDVKIMLYPEEHPERYKLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEADRLYFPRIPELMNRFLEPIDPIVIPYTINVSEHTVEKVTIFDIRINTEDPRHSQIRSFLATMMSQDKIRSIDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTNMNYAEKRSADYYQQPWVHESAFHYLN 408          
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 4.411e-7
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = -2
Query: 1015 FKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVK-FTM 1200
             KLS  L E LG+E  +RP+ +  +W Y+KA  LQ+P D     CD +L+ VF  D +  FTM
Sbjct:  121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMFTM 183          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I1N798_SOYBN0.000e+077.98Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2RZ98_GLYSO0.000e+077.98SWI/SNF complex component SNF12 like OS=Glycine so... [more]
B9S7A2_RICCO0.000e+084.84Brg-1 associated factor, putative OS=Ricinus commu... [more]
D7M610_ARALL0.000e+076.16SWIB complex BAF60b domain-containing protein OS=A... [more]
V7C2C2_PHAVU0.000e+076.60Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SMRD2_BOVIN6.612e-6833.91SWI/SNF-related matrix-associated actin-dependent ... [more]
SNF12_DICDI1.474e-5830.45SWI/SNF complex component SNF12 homolog OS=Dictyos... [more]
SSR3_SCHPO1.782e-5530.56SWI/SNF and RSC complexes subunit ssr3 OS=Schizosa... [more]
UAF30_SCHPO4.411e-742.86Upstream activation factor subunit spp27 OS=Schizo... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019835SWIB domainSMARTSM00151swib_2coord: 335..414
e-value: 1.4E-17
score: 74.4
IPR003121SWIB/MDM2 domainGENE3D1.10.245.10coord: 329..420
e-value: 5.0E-29
score: 99.8
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 338..409
e-value: 5.4E-23
score: 80.5
IPR003121SWIB/MDM2 domainSUPERFAMILY47592SWIB/MDM2 domaincoord: 329..419
NoneNo IPR availablePANTHERPTHR13844:SF13SUBFAMILY NOT NAMEDcoord: 9..91
coord: 151..544
NoneNo IPR availablePANTHERPTHR13844BRG-1 ASSOCIATED FACTOR 60 BAF60coord: 9..91
NoneNo IPR availablePANTHERPTHR13844BRG-1 ASSOCIATED FACTOR 60 BAF60coord: 151..544

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0021561 ID=g.arboreum_cottongen_reftransV1_0021561; Name=g.arboreum_cottongen_reftransV1_0021561; organism=Gossypium arboreum; type=contig; length=2287bp
GAAAGGGAGACCAAGGCATGCTGGTCCAAACTCTTCATGAGGATTTTTCT
TGATTTGCTAGTACCCAACATTTTTTTCGGACACTGATGTAAGGATCTCT
GACTTAAGGACCCTTAAAATACATGAAAGAGCTTTTAGAAATTTGGACAC
ACCCACATTTGAGACACATGACAATATCTGACACTCGTATCCTAAATCAA
GGTATGATTATCCTGGAGTGTACCATATATAAATTACAAATTGAACTAAA
TAAAACTATCATATGCTAATTTCTATTTTTTTTTTCGTTTAAAAAAGTTT
GATGATAACCATGCCTAAACAAGCTACTTCCTGTTCTACATCCCTCTCTA
AATCCTCATCCAACAACATTGTAATTCTACTTCCACTAAAGGACTGGTCT
ACAGTTCAGTTGATACATGATTCAAATCAATGAAAAACCTAGCAAGCCAT
CGATACCTTCGGAACCATGATTCATGTTCTTCCTGGAGCCTTACTTCCAG
TAGCTGGCTTCTCCAGGGCATCACTTTCCACTAGGTGGCTTTGCATGATT
CATATGCTTCCTGGAGCATCACTTCCAGCAGGTGGCTTGCGATTCAGATA
ACGGATCACAGCATCTTCAACCCAAGATTGGTTAAAGAAATCTGATCGCC
GCTCTTTTTCAGCACTTCGACTAGGTTCTCCAGCTACCATTTTCAGATCC
TGGCTCTGAGACTGAACTAAAGCATTTATAAATTCTACTGGAGATTGACT
GAATCCTAGGAAAAATGCACGTCTTCTACAGTGGTCATGAATTTTCCTTA
TGGTAGCACATATTGCTTCATCACAAGCATCAATCTCTTTGCTCTTCTCT
CCATTTGCCAACAGAGCAGACAATTCCCTCTGTATAGGAAAGGGCACGTC
AACTAACACATCATAGCATGCATTTCCAGCAGGACTATTCCCGGAAAGCT
TGATTTTATGCTCCAAATGTATGGGTGGTGGTGGAGACAAATGCTGTGAT
ATCTTCTGTGAAACCATGGTAAATTTCACTCTGTCTTCCCCAAAAACTTT
CTGAAGCTGTGCATCACAATTAAAAAAGGACGGATCATATGGGTTCTGAA
GTTTTCTAGCCTTCACATAATGCCAAATTGCAGCAATAATTCTGGGGCGC
GTATCAACTTCAATACCAAGGACTTCCATTAAAGCAGAAGAAAGCTTAAA
TTTCTCAGGTACATAATTCATTTCCAGCCGTATGTTCACAGTGAACTCCT
TATCCCCTTTTCTCTTCACCTCAAAACCTTCATTAGGTGTCGGTGATCGA
GCATGCTCCCATATAATGATATGATTATCTGGATATAGTTTTTGGTCCAA
TGAAATTGTCACTCTCTTGAAGAAAGATGAAAACTTCGGGTATAAAGGGT
TTGTTCTTTGAACAAATCCAGGTTGATCTGGATCTACTCCATCTTCCAGG
ATTCTCCCAATAATCTTAAGGGTCCATGTAGGAGGCTCTGCATTAGGCTT
CTGCGGAATTGTCTTAATCTGATTAGCAAATGTGTTGAAAACATATATTC
GAAGAGTTTTCTGAACACAAGGTGGGTTCTTAAGTGCTTCCTGGATGTCA
ACTTTTTTCCTAGCTAATGCAGCATCAACACGTGCCTCAAACTCAAGAAG
CTGGGTATACAAAGCAGATTCAGGAAGAATTGCTGCCACTCTATCCTGTA
GTTGTTTCTCAGGAAGCTTCTGCTTCTTTCTACGTGCAGCGGCTGTAAGT
TCCATTGTTCTCAAAGGTGACATTGTGTTCATCATAGGAACACCAGGAGG
GCGCATGGGGGGCCTTTGAAGGATTCTCTTTGCACTTGCACTGCCAGGAG
TAGACATGGAGGGTGAAGACGAACCTAATGTCCCAAAGCCAGCATTCTGA
GCCTGGTTAAGGGACAAACCTTGAGCTTGTAAGTGTGCTTGGAGTTGGGC
ATGAGCTTGAGCTTGAGCTTGAGCTTTCGACTGAGCCTGAGCAAGGGCTT
GAGCTTGGGATAGCTGATACTGAGCTTGAAACCCAGCGCTGAGTTGAGCT
TGTGAAAATGCAGGGTTTCCAGGCATAGGAGGAGGCACCATCCCCGCATT
ACCAAAGGGCGACGAAGATGCCCCAAGGTTCTTCGGGGGATTATTGCCAT
TCATAGACATCACCGGAAAAATATCAAATATCCACCAAAATCTAAAACAT
TCACAACAAAGCAAATTCCAAGCTATCTCAGCAAATACCCACTAACCAAA
AACACCCAAAGAAGCAATGATTCCCTTTAAAATCAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR019835SWIB_domain
IPR003121SWIB_MDM2_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding