g.arboreum_cottongen_reftransV1_0000159, g.arboreum_cottongen_reftransV1_0000159 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000159
Unique Nameg.arboreum_cottongen_reftransV1_0000159
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length427
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr13chromosomeg.arboreum_cottongen_reftransV1_0000159:1..427 .
Chr13:71037015..71037441 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: A0A067KWR5_JATCU (Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_24601 PE=4 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.874e-55
Identity = 101/145 (69.66%), Postives = 129/145 (88.97%), Query Frame = 2
Query:    2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNASA---DKEASDQKLVRGNLALERSL 427
            F+ALRR+LSQ+ED+KES S + +RA+LKAGNI+ +KGVRTN +KR+GVVPGVE+GDIFFFRME+ L+GLHSQSMAGID+M ++ DIE + +A+SIVSSGGY+D+AED DVL+Y+GQGGN ++   DK+A+DQKL RGNLALERSL
Sbjct:  162 FDALRRRLSQLEDSKESPSGLIRRADLKAGNILMSKGVRTNMRKRVGVVPGVEVGDIFFFRMEMCLVGLHSQSMAGIDYMVIRGDIEEDPLAVSIVSSGGYDDEAEDKDVLIYSGQGGNVNSNKKDKQAADQKLERGNLALERSL 306          
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: M4EJ11_BRARP (Histone-lysine N-methyltransferase OS=Brassica rapa subsp. pekinensis GN=Bra028776 PE=4 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 3.555e-54
Identity = 95/146 (65.07%), Postives = 117/146 (80.14%), Query Frame = 2
Query:    2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGE---RVAISIVSSGGYEDDAEDPDVLVYTGQ-GGNASADKEASDQKLVRGNLALERSL 427
            +EALRR+ SQ+EDA+E+ S I KRA+LKAG+   ++GVRTN KKR G+VPGVEIGDIFFFR E+ L+GLHS SMAGID++ +K D E E    +A SIVSSG Y+++  DPDVLVYTGQ GGNA  +K+ SDQKL RGNLALE+SL
Sbjct:  128 YEALRRRFSQLEDAREAVSGINKRADLKAGSTCMSRGVRTNTKKRPGIVPGVEIGDIFFFRFEMCLVGLHSPSMAGIDYLLLKGDTEEEDTITIATSIVSSGYYDNEEGDPDVLVYTGQGGGNADKEKQTSDQKLERGNLALEKSL 273          
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: A0A0D3AHU2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.257e-54
Identity = 93/145 (64.14%), Postives = 118/145 (81.38%), Query Frame = 2
Query:    2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAI--SIVSSGGYEDDAEDPDVLVYTGQ-GGNASADKEASDQKLVRGNLALERSL 427
            +EALRR+ SQ+EDA+E+ S I KRA+LKAG+   ++GVRTN KKR+G+VPGVEIGDIFFFR E+ L+GLHS SMAGID++ +K + + E + I  SIVSSG Y+++  DPDVLVYTGQ GGNA  +K+ SDQKL RGNLALE+SL
Sbjct:  207 YEALRRRFSQLEDAREAVSGINKRADLKAGSTCMSRGVRTNTKKRLGIVPGVEIGDIFFFRFEMCLVGLHSPSMAGIDYLLLKGEAQEESITIATSIVSSGYYDNEEGDPDVLVYTGQGGGNADKEKQTSDQKLERGNLALEKSL 351          
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: A0A0B0NFZ4_GOSAR (Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Gossypium arboreum GN=F383_00564 PE=4 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.541e-54
Identity = 92/143 (64.34%), Postives = 116/143 (81.12%), Query Frame = 2
Query:    2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNA-SADKEASDQKLVRGNLALERSL 427
            ++ LRRKLSQ+ED+KES   + +R +L+AG I+  KG+RTN KKRIGVVPGVE+GDIFFFRME+ L+GLH+  MAGID+M +K   + E VA+SIVSSGGYED++ED DVLVY+GQGGN  +   E +DQKL RGNLALE+SL
Sbjct:  202 YDLLRRKLSQIEDSKESTPGVTRRPDLRAGTILMNKGIRTNVKKRIGVVPGVEVGDIFFFRMEMCLVGLHAPIMAGIDYMGLKVSQDEEPVAVSIVSSGGYEDNSEDADVLVYSGQGGNINNKGMEITDQKLERGNLALEKSL 344          
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: A0A078FI82_BRANA (BnaC02g02520D protein OS=Brassica napus GN=BnaC02g02520D PE=4 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.359e-54
Identity = 94/146 (64.38%), Postives = 118/146 (80.82%), Query Frame = 2
Query:    2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGER---VAISIVSSGGYEDDAEDPDVLVYTGQ-GGNASADKEASDQKLVRGNLALERSL 427
            +EALRR+ SQ+EDA+E+ S I KRA+LKAG+   ++GVRTN KKR+G+VPGVEIGDIFFFR E+ L+GLHS SMAGID++ +K + E E    +A SIVSSG Y+++  DPDVLVYTGQ GGNA  +K+ SDQKL RGNLALE+SL
Sbjct:  216 YEALRRRFSQLEDAREAVSGINKRADLKAGSTCMSRGVRTNTKKRLGIVPGVEIGDIFFFRFEMCLVGLHSPSMAGIDYLLLKGEAEEEESITIATSIVSSGYYDNEEGDPDVLVYTGQGGGNADKEKQTSDQKLERGNLALEKSL 361          
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: YDG2_ARATH (YDG domain-containing protein At5g47160 OS=Arabidopsis thaliana GN=At5g47160 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.313e-19
Identity = 62/139 (44.60%), Postives = 84/139 (60.43%), Query Frame = 2
Query:   23 LSQMEDAKESHSEIFK-RANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYE-DDAEDPDVLVYTGQGGNA-SADKEA-SDQKLVRGNLALERSL 427
            L + + A+   SE  K R + +   I+   G++ N +KRIG VPG+++GD   F+  L +IGLH   M+GID+M  K + E   VA SIVSS G +  D    DV++Y GQGGN  S D +A  DQKLV GNLAL  S+
Sbjct:  222 LDRNKAARRGGSETAKSRIDYQTWTILREMGMQVNSQKRIGSVPGIKVGDKIQFKAALSVIGLHFGIMSGIDYM-YKGNKE---VATSIVSSEGNDYGDRFINDVMIYCGQGGNMRSKDHKAIKDQKLVGGNLALANSI 356          
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: SUVH4_ARATH (Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 5.825e-19
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 2
Query:   65 FKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGER----VAISIVSSGGYEDDAEDPDVLVYTGQGG-NASADK-EASDQKLVRGNLALE 418
              R +LK    M         +K IG +PG+++G  FF R E+  +G H+  + GID+M M+ + E       +A+SIV SG YEDD ++ D + YTGQGG N + +K +  DQ L RGNLAL+
Sbjct:  124 LSRPDLKGVTEMIKAKAILYPRKIIGDLPGIDVGHRFFSRAEMCAVGFHNHWLNGIDYMSMEYEKEYSNYKLPLAVSIVMSGQYEDDLDNADTVTYTGQGGHNLTGNKRQIKDQLLERGNLALK 247          
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: UHRF1_RAT (E3 ubiquitin-protein ligase UHRF1 OS=Rattus norvegicus GN=Uhrf1 PE=2 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 1.440e-9
Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 2
Query:  140 GVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQG-----GNASADKEASDQKLVRGNLAL 415
            G +PGV +G ++ FR+++   G+H   +AGI              A S+V +GGYEDD ++ +   YTG G     GN     ++SDQKL   N AL
Sbjct:  416 GPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG-------AYSLVLAGGYEDDVDNGNFFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRAL 505          
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: SUVHA_ARATH (Putative inactive histone-lysine N-methyltransferase family member SUVH10 OS=Arabidopsis thaliana GN=SUVH10 PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.478e-9
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 2
Query:  197 LIGLHSQSMAGIDFMPMK--ADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNASADKEASDQKLVRGNLALE 418
            L+GLHS ++  ++F+ ++   D EG+++A+S++SSG   D  EDPD L++TG GG      +  +QKL R N+ LE
Sbjct:    3 LVGLHSGTID-MEFIGVEDHGDEEGKQIAVSVISSGKNADKTEDPDSLIFTGFGGTDMYHGQPCNQKLERLNIPLE 77          
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: UHRF1_MOUSE (E3 ubiquitin-protein ligase UHRF1 OS=Mus musculus GN=Uhrf1 PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 1.830e-9
Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 2
Query:  140 GVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQG-----GNASADKEASDQKLVRGNLAL 415
            G +PGV +G ++ FR+++   G+H   +AGI              A S+V +GGYEDD ++ +   YTG G     GN     ++SDQKL   N AL
Sbjct:  424 GPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG-------AYSLVLAGGYEDDVDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRAL 513          
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: UHRF1_DANRE (E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio GN=uhrf1 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.038e-9
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 2
Query:  140 GVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQG-----GNASADKEASDQKLVRGNLAL 415
            G VPGV +G ++ FR+++   G+H   +AGI              A S+V +GGYEDD +D +   YTG G     GN    +++ DQKL   N AL
Sbjct:  417 GPVPGVPVGTLWKFRVQVSESGVHRPHVAGIHGRSNDG-------AYSLVLAGGYEDDVDDGNEFTYTGSGGRDLSGNKRTAEQSCDQKLTNMNRAL 506          
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: UHRF1_XENLA (E3 ubiquitin-protein ligase UHRF1 OS=Xenopus laevis GN=uhrf1 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.144e-8
Identity = 45/152 (29.61%), Postives = 71/152 (46.71%), Query Frame = 2
Query:   14 RRKLSQMEDAKESHSEIFKRANLKAGNIM----FTKGVRTNGKKR---------IGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQG-----GNASADKEASDQKLVRGNLAL 415
            R   S++  A E   E  K+A + + N      + KG+   G+ R          G +PGV +G ++ FR+++   G+H   +AGI              + S+V +GGYEDD ++ +   YTG G     GN    +++ DQKL   N AL
Sbjct:  362 RNDASEVVLAGEKLKESKKKARMASANSSSQRDWGKGMACVGRSRECTIVPSNHYGPIPGVPVGTLWKFRVQVSESGVHRPHVAGIHGRSNDG-------SYSLVLAGGYEDDVDNGNEFTYTGSGGRDLSGNKRTAEQSCDQKLSNMNRAL 506          
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: UHRF1_HUMAN (E3 ubiquitin-protein ligase UHRF1 OS=Homo sapiens GN=UHRF1 PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 2.452e-8
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 2
Query:  140 GVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQG-----GNASADKEASDQKLVRGNLAL 415
            G +PG+ +G ++ FR+++   G+H   +AGI              A S+V +GGYEDD +  +   YTG G     GN    +++ DQKL   N AL
Sbjct:  419 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG-------AYSLVLAGGYEDDVDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRAL 508          
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: UHRF1_BOVIN (E3 ubiquitin-protein ligase UHRF1 OS=Bos taurus GN=UHRF1 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.845e-8
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 2
Query:  140 GVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQG-----GNASADKEASDQKLVRGNLAL 415
            G +PG+ +G ++ FR+++   G+H   +AGI              A S+V +GGYEDD +  +   YTG G     GN    +++ DQKL   N AL
Sbjct:  423 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHG-------RSNHGAYSLVLAGGYEDDVDHGNSFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRAL 512          
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: UHRF1_XENTR (E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis GN=uhrf1 PE=3 SV=2)

HSP 1 Score: 54.299 bits (129), Expect = 8.337e-8
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 2
Query:  140 GVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQG-----GNASADKEASDQKLVRGNLAL 415
            G +PGV +G ++ FR+++   G+H   +AGI              + S+V +GGYEDD ++     YTG G     GN    +++ DQKL   N AL
Sbjct:  419 GPIPGVPVGTLWKFRVQVSESGVHRPHVAGIHGRSNDG-------SYSLVLAGGYEDDVDNGSEFTYTGSGGRDLSGNKRTAEQSCDQKLTNMNRAL 508          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067KWR5_JATCU3.874e-5569.66Histone-lysine N-methyltransferase OS=Jatropha cur... [more]
M4EJ11_BRARP3.555e-5465.07Histone-lysine N-methyltransferase OS=Brassica rap... [more]
A0A0D3AHU2_BRAOL5.257e-5464.14Uncharacterized protein OS=Brassica oleracea var. ... [more]
A0A0B0NFZ4_GOSAR6.541e-5464.34Histone-lysine N-methyltransferase, H3 lysine-9 sp... [more]
A0A078FI82_BRANA7.359e-5464.38BnaC02g02520D protein OS=Brassica napus GN=BnaC02g... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
YDG2_ARATH5.313e-1944.60YDG domain-containing protein At5g47160 OS=Arabido... [more]
SUVH4_ARATH5.825e-1940.32Histone-lysine N-methyltransferase, H3 lysine-9 sp... [more]
UHRF1_RAT1.440e-936.08E3 ubiquitin-protein ligase UHRF1 OS=Rattus norveg... [more]
SUVHA_ARATH1.478e-940.79Putative inactive histone-lysine N-methyltransfera... [more]
UHRF1_MOUSE1.830e-936.08E3 ubiquitin-protein ligase UHRF1 OS=Mus musculus ... [more]
UHRF1_DANRE4.038e-937.11E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio G... [more]
UHRF1_XENLA1.144e-829.61E3 ubiquitin-protein ligase UHRF1 OS=Xenopus laevi... [more]
UHRF1_HUMAN2.452e-834.02E3 ubiquitin-protein ligase UHRF1 OS=Homo sapiens ... [more]
UHRF1_BOVIN2.845e-834.02E3 ubiquitin-protein ligase UHRF1 OS=Bos taurus GN... [more]
UHRF1_XENTR8.337e-834.02E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropi... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003105SRA-YDGSMARTSM00466G9a_1coord: 32..132
e-value: 6.8E-26
score: 102.0
IPR003105SRA-YDGPFAMPF02182SAD_SRAcoord: 36..131
e-value: 2.0E-26
score: 92.4
IPR003105SRA-YDGGENE3D2.30.280.10coord: 48..132
e-value: 2.2E-26
score: 91.8
IPR003105SRA-YDGPROSITEPS51015YDGcoord: 37..132
score: 34.655
NoneNo IPR availablePANTHERPTHR22884:SF383HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1-RELATEDcoord: 1..132
NoneNo IPR availablePANTHERPTHR22884SET DOMAIN PROTEINScoord: 1..132
IPR015947PUA-like domainSUPERFAMILY88697PUA domain-likecoord: 19..132

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000159 ID=g.arboreum_cottongen_reftransV1_0000159; Name=g.arboreum_cottongen_reftransV1_0000159; organism=Gossypium arboreum; type=contig; length=427bp
GTTCGAAGCACTTAGGAGAAAGCTTAGCCAAATGGAAGATGCAAAGGAAT
CACATTCTGAGATTTTCAAGCGTGCTAACTTAAAAGCTGGCAACATTATG
TTCACGAAAGGGGTACGGACTAATGGAAAAAAGCGAATTGGAGTTGTTCC
TGGTGTTGAAATCGGTGACATTTTCTTCTTCCGAATGGAGTTGATTTTAA
TCGGGTTGCATTCTCAATCCATGGCTGGAATTGACTTCATGCCTATGAAG
GCTGATATTGAGGGAGAGCGAGTGGCTATAAGCATTGTTTCGTCCGGAGG
GTATGAAGACGATGCTGAAGATCCCGATGTTTTGGTATACACCGGGCAAG
GTGGGAATGCTAGTGCCGATAAAGAAGCATCCGATCAGAAGCTTGTGAGG
GGCAATCTTGCTTTGGAAAGGAGCTTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003105SRA_YDG
IPR015947PUA-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0042393histone binding