g.arboreum_cottongen_reftransV1_0000159, g.arboreum_cottongen_reftransV1_0000159 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: A0A067KWR5_JATCU (Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_24601 PE=4 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 3.874e-55 Identity = 101/145 (69.66%), Postives = 129/145 (88.97%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNASA---DKEASDQKLVRGNLALERSL 427 F+ALRR+LSQ+ED+KES S + +RA+LKAGNI+ +KGVRTN +KR+GVVPGVE+GDIFFFRME+ L+GLHSQSMAGID+M ++ DIE + +A+SIVSSGGY+D+AED DVL+Y+GQGGN ++ DK+A+DQKL RGNLALERSL Sbjct: 162 FDALRRRLSQLEDSKESPSGLIRRADLKAGNILMSKGVRTNMRKRVGVVPGVEVGDIFFFRMEMCLVGLHSQSMAGIDYMVIRGDIEEDPLAVSIVSSGGYDDEAEDKDVLIYSGQGGNVNSNKKDKQAADQKLERGNLALERSL 306
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: M4EJ11_BRARP (Histone-lysine N-methyltransferase OS=Brassica rapa subsp. pekinensis GN=Bra028776 PE=4 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 3.555e-54 Identity = 95/146 (65.07%), Postives = 117/146 (80.14%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGE---RVAISIVSSGGYEDDAEDPDVLVYTGQ-GGNASADKEASDQKLVRGNLALERSL 427 +EALRR+ SQ+EDA+E+ S I KRA+LKAG+ ++GVRTN KKR G+VPGVEIGDIFFFR E+ L+GLHS SMAGID++ +K D E E +A SIVSSG Y+++ DPDVLVYTGQ GGNA +K+ SDQKL RGNLALE+SL Sbjct: 128 YEALRRRFSQLEDAREAVSGINKRADLKAGSTCMSRGVRTNTKKRPGIVPGVEIGDIFFFRFEMCLVGLHSPSMAGIDYLLLKGDTEEEDTITIATSIVSSGYYDNEEGDPDVLVYTGQGGGNADKEKQTSDQKLERGNLALEKSL 273
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: A0A0D3AHU2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 5.257e-54 Identity = 93/145 (64.14%), Postives = 118/145 (81.38%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAI--SIVSSGGYEDDAEDPDVLVYTGQ-GGNASADKEASDQKLVRGNLALERSL 427 +EALRR+ SQ+EDA+E+ S I KRA+LKAG+ ++GVRTN KKR+G+VPGVEIGDIFFFR E+ L+GLHS SMAGID++ +K + + E + I SIVSSG Y+++ DPDVLVYTGQ GGNA +K+ SDQKL RGNLALE+SL Sbjct: 207 YEALRRRFSQLEDAREAVSGINKRADLKAGSTCMSRGVRTNTKKRLGIVPGVEIGDIFFFRFEMCLVGLHSPSMAGIDYLLLKGEAQEESITIATSIVSSGYYDNEEGDPDVLVYTGQGGGNADKEKQTSDQKLERGNLALEKSL 351
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: A0A0B0NFZ4_GOSAR (Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Gossypium arboreum GN=F383_00564 PE=4 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.541e-54 Identity = 92/143 (64.34%), Postives = 116/143 (81.12%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNA-SADKEASDQKLVRGNLALERSL 427 ++ LRRKLSQ+ED+KES + +R +L+AG I+ KG+RTN KKRIGVVPGVE+GDIFFFRME+ L+GLH+ MAGID+M +K + E VA+SIVSSGGYED++ED DVLVY+GQGGN + E +DQKL RGNLALE+SL Sbjct: 202 YDLLRRKLSQIEDSKESTPGVTRRPDLRAGTILMNKGIRTNVKKRIGVVPGVEVGDIFFFRMEMCLVGLHAPIMAGIDYMGLKVSQDEEPVAVSIVSSGGYEDNSEDADVLVYSGQGGNINNKGMEITDQKLERGNLALEKSL 344
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: A0A078FI82_BRANA (BnaC02g02520D protein OS=Brassica napus GN=BnaC02g02520D PE=4 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 7.359e-54 Identity = 94/146 (64.38%), Postives = 118/146 (80.82%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGER---VAISIVSSGGYEDDAEDPDVLVYTGQ-GGNASADKEASDQKLVRGNLALERSL 427 +EALRR+ SQ+EDA+E+ S I KRA+LKAG+ ++GVRTN KKR+G+VPGVEIGDIFFFR E+ L+GLHS SMAGID++ +K + E E +A SIVSSG Y+++ DPDVLVYTGQ GGNA +K+ SDQKL RGNLALE+SL Sbjct: 216 YEALRRRFSQLEDAREAVSGINKRADLKAGSTCMSRGVRTNTKKRLGIVPGVEIGDIFFFRFEMCLVGLHSPSMAGIDYLLLKGEAEEEESITIATSIVSSGYYDNEEGDPDVLVYTGQGGGNADKEKQTSDQKLERGNLALEKSL 361
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: YDG2_ARATH (YDG domain-containing protein At5g47160 OS=Arabidopsis thaliana GN=At5g47160 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 5.313e-19 Identity = 62/139 (44.60%), Postives = 84/139 (60.43%), Query Frame = 2 Query: 23 LSQMEDAKESHSEIFK-RANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYE-DDAEDPDVLVYTGQGGNA-SADKEA-SDQKLVRGNLALERSL 427 L + + A+ SE K R + + I+ G++ N +KRIG VPG+++GD F+ L +IGLH M+GID+M K + E VA SIVSS G + D DV++Y GQGGN S D +A DQKLV GNLAL S+ Sbjct: 222 LDRNKAARRGGSETAKSRIDYQTWTILREMGMQVNSQKRIGSVPGIKVGDKIQFKAALSVIGLHFGIMSGIDYM-YKGNKE---VATSIVSSEGNDYGDRFINDVMIYCGQGGNMRSKDHKAIKDQKLVGGNLALANSI 356
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: SUVH4_ARATH (Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 5.825e-19 Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 2 Query: 65 FKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGER----VAISIVSSGGYEDDAEDPDVLVYTGQGG-NASADK-EASDQKLVRGNLALE 418 R +LK M +K IG +PG+++G FF R E+ +G H+ + GID+M M+ + E +A+SIV SG YEDD ++ D + YTGQGG N + +K + DQ L RGNLAL+ Sbjct: 124 LSRPDLKGVTEMIKAKAILYPRKIIGDLPGIDVGHRFFSRAEMCAVGFHNHWLNGIDYMSMEYEKEYSNYKLPLAVSIVMSGQYEDDLDNADTVTYTGQGGHNLTGNKRQIKDQLLERGNLALK 247
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: UHRF1_RAT (E3 ubiquitin-protein ligase UHRF1 OS=Rattus norvegicus GN=Uhrf1 PE=2 SV=2) HSP 1 Score: 59.6918 bits (143), Expect = 1.440e-9 Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 2 Query: 140 GVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQG-----GNASADKEASDQKLVRGNLAL 415 G +PGV +G ++ FR+++ G+H +AGI A S+V +GGYEDD ++ + YTG G GN ++SDQKL N AL Sbjct: 416 GPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG-------AYSLVLAGGYEDDVDNGNFFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRAL 505
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: SUVHA_ARATH (Putative inactive histone-lysine N-methyltransferase family member SUVH10 OS=Arabidopsis thaliana GN=SUVH10 PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.478e-9 Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 2 Query: 197 LIGLHSQSMAGIDFMPMK--ADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNASADKEASDQKLVRGNLALE 418 L+GLHS ++ ++F+ ++ D EG+++A+S++SSG D EDPD L++TG GG + +QKL R N+ LE Sbjct: 3 LVGLHSGTID-MEFIGVEDHGDEEGKQIAVSVISSGKNADKTEDPDSLIFTGFGGTDMYHGQPCNQKLERLNIPLE 77
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: UHRF1_MOUSE (E3 ubiquitin-protein ligase UHRF1 OS=Mus musculus GN=Uhrf1 PE=1 SV=2) HSP 1 Score: 59.3066 bits (142), Expect = 1.830e-9 Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 2 Query: 140 GVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQG-----GNASADKEASDQKLVRGNLAL 415 G +PGV +G ++ FR+++ G+H +AGI A S+V +GGYEDD ++ + YTG G GN ++SDQKL N AL Sbjct: 424 GPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG-------AYSLVLAGGYEDDVDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRAL 513
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: UHRF1_DANRE (E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio GN=uhrf1 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 4.038e-9 Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 2 Query: 140 GVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQG-----GNASADKEASDQKLVRGNLAL 415 G VPGV +G ++ FR+++ G+H +AGI A S+V +GGYEDD +D + YTG G GN +++ DQKL N AL Sbjct: 417 GPVPGVPVGTLWKFRVQVSESGVHRPHVAGIHGRSNDG-------AYSLVLAGGYEDDVDDGNEFTYTGSGGRDLSGNKRTAEQSCDQKLTNMNRAL 506
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: UHRF1_XENLA (E3 ubiquitin-protein ligase UHRF1 OS=Xenopus laevis GN=uhrf1 PE=2 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 1.144e-8 Identity = 45/152 (29.61%), Postives = 71/152 (46.71%), Query Frame = 2 Query: 14 RRKLSQMEDAKESHSEIFKRANLKAGNIM----FTKGVRTNGKKR---------IGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQG-----GNASADKEASDQKLVRGNLAL 415 R S++ A E E K+A + + N + KG+ G+ R G +PGV +G ++ FR+++ G+H +AGI + S+V +GGYEDD ++ + YTG G GN +++ DQKL N AL Sbjct: 362 RNDASEVVLAGEKLKESKKKARMASANSSSQRDWGKGMACVGRSRECTIVPSNHYGPIPGVPVGTLWKFRVQVSESGVHRPHVAGIHGRSNDG-------SYSLVLAGGYEDDVDNGNEFTYTGSGGRDLSGNKRTAEQSCDQKLSNMNRAL 506
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: UHRF1_HUMAN (E3 ubiquitin-protein ligase UHRF1 OS=Homo sapiens GN=UHRF1 PE=1 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 2.452e-8 Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 2 Query: 140 GVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQG-----GNASADKEASDQKLVRGNLAL 415 G +PG+ +G ++ FR+++ G+H +AGI A S+V +GGYEDD + + YTG G GN +++ DQKL N AL Sbjct: 419 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG-------AYSLVLAGGYEDDVDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRAL 508
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: UHRF1_BOVIN (E3 ubiquitin-protein ligase UHRF1 OS=Bos taurus GN=UHRF1 PE=2 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 2.845e-8 Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 2 Query: 140 GVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQG-----GNASADKEASDQKLVRGNLAL 415 G +PG+ +G ++ FR+++ G+H +AGI A S+V +GGYEDD + + YTG G GN +++ DQKL N AL Sbjct: 423 GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHG-------RSNHGAYSLVLAGGYEDDVDHGNSFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRAL 512
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: UHRF1_XENTR (E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis GN=uhrf1 PE=3 SV=2) HSP 1 Score: 54.299 bits (129), Expect = 8.337e-8 Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 2 Query: 140 GVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQG-----GNASADKEASDQKLVRGNLAL 415 G +PGV +G ++ FR+++ G+H +AGI + S+V +GGYEDD ++ YTG G GN +++ DQKL N AL Sbjct: 419 GPIPGVPVGTLWKFRVQVSESGVHRPHVAGIHGRSNDG-------SYSLVLAGGYEDDVDNGSEFTYTGSGGRDLSGNKRTAEQSCDQKLTNMNRAL 508 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 20
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000159 ID=g.arboreum_cottongen_reftransV1_0000159; Name=g.arboreum_cottongen_reftransV1_0000159; organism=Gossypium arboreum; type=contig; length=427bpback to top |