g.arboreum_cottongen_reftransV1_0000159, g.arboreum_cottongen_reftransV1_0000159 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: A0A067KWR5_JATCU (Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_24601 PE=4 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 3.874e-55 Identity = 101/145 (69.66%), Postives = 129/145 (88.97%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNASA---DKEASDQKLVRGNLALERSL 427 F+ALRR+LSQ+ED+KES S + +RA+LKAGNI+ +KGVRTN +KR+GVVPGVE+GDIFFFRME+ L+GLHSQSMAGID+M ++ DIE + +A+SIVSSGGY+D+AED DVL+Y+GQGGN ++ DK+A+DQKL RGNLALERSL Sbjct: 162 FDALRRRLSQLEDSKESPSGLIRRADLKAGNILMSKGVRTNMRKRVGVVPGVEVGDIFFFRMEMCLVGLHSQSMAGIDYMVIRGDIEEDPLAVSIVSSGGYDDEAEDKDVLIYSGQGGNVNSNKKDKQAADQKLERGNLALERSL 306
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: M4EJ11_BRARP (Histone-lysine N-methyltransferase OS=Brassica rapa subsp. pekinensis GN=Bra028776 PE=4 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 3.555e-54 Identity = 95/146 (65.07%), Postives = 117/146 (80.14%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGE---RVAISIVSSGGYEDDAEDPDVLVYTGQ-GGNASADKEASDQKLVRGNLALERSL 427 +EALRR+ SQ+EDA+E+ S I KRA+LKAG+ ++GVRTN KKR G+VPGVEIGDIFFFR E+ L+GLHS SMAGID++ +K D E E +A SIVSSG Y+++ DPDVLVYTGQ GGNA +K+ SDQKL RGNLALE+SL Sbjct: 128 YEALRRRFSQLEDAREAVSGINKRADLKAGSTCMSRGVRTNTKKRPGIVPGVEIGDIFFFRFEMCLVGLHSPSMAGIDYLLLKGDTEEEDTITIATSIVSSGYYDNEEGDPDVLVYTGQGGGNADKEKQTSDQKLERGNLALEKSL 273
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: A0A0D3AHU2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 5.257e-54 Identity = 93/145 (64.14%), Postives = 118/145 (81.38%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAI--SIVSSGGYEDDAEDPDVLVYTGQ-GGNASADKEASDQKLVRGNLALERSL 427 +EALRR+ SQ+EDA+E+ S I KRA+LKAG+ ++GVRTN KKR+G+VPGVEIGDIFFFR E+ L+GLHS SMAGID++ +K + + E + I SIVSSG Y+++ DPDVLVYTGQ GGNA +K+ SDQKL RGNLALE+SL Sbjct: 207 YEALRRRFSQLEDAREAVSGINKRADLKAGSTCMSRGVRTNTKKRLGIVPGVEIGDIFFFRFEMCLVGLHSPSMAGIDYLLLKGEAQEESITIATSIVSSGYYDNEEGDPDVLVYTGQGGGNADKEKQTSDQKLERGNLALEKSL 351
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: A0A0B0NFZ4_GOSAR (Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Gossypium arboreum GN=F383_00564 PE=4 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.541e-54 Identity = 92/143 (64.34%), Postives = 116/143 (81.12%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNA-SADKEASDQKLVRGNLALERSL 427 ++ LRRKLSQ+ED+KES + +R +L+AG I+ KG+RTN KKRIGVVPGVE+GDIFFFRME+ L+GLH+ MAGID+M +K + E VA+SIVSSGGYED++ED DVLVY+GQGGN + E +DQKL RGNLALE+SL Sbjct: 202 YDLLRRKLSQIEDSKESTPGVTRRPDLRAGTILMNKGIRTNVKKRIGVVPGVEVGDIFFFRMEMCLVGLHAPIMAGIDYMGLKVSQDEEPVAVSIVSSGGYEDNSEDADVLVYSGQGGNINNKGMEITDQKLERGNLALEKSL 344
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Match: A0A078FI82_BRANA (BnaC02g02520D protein OS=Brassica napus GN=BnaC02g02520D PE=4 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 7.359e-54 Identity = 94/146 (64.38%), Postives = 118/146 (80.82%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGER---VAISIVSSGGYEDDAEDPDVLVYTGQ-GGNASADKEASDQKLVRGNLALERSL 427 +EALRR+ SQ+EDA+E+ S I KRA+LKAG+ ++GVRTN KKR+G+VPGVEIGDIFFFR E+ L+GLHS SMAGID++ +K + E E +A SIVSSG Y+++ DPDVLVYTGQ GGNA +K+ SDQKL RGNLALE+SL Sbjct: 216 YEALRRRFSQLEDAREAVSGINKRADLKAGSTCMSRGVRTNTKKRLGIVPGVEIGDIFFFRFEMCLVGLHSPSMAGIDYLLLKGEAEEEESITIATSIVSSGYYDNEEGDPDVLVYTGQGGGNADKEKQTSDQKLERGNLALEKSL 361
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: SUVH1_ARATH (Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Arabidopsis thaliana GN=SUVH1 PE=2 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 6.908e-58 Identity = 91/142 (64.08%), Postives = 116/142 (81.69%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNASADKEASDQKLVRGNLALERSL 427 F+ALRR+ +Q+EDAKE+ S I KR +LK+G+ +GVRTN KKR G+VPGVEIGD+FFFR E+ L+GLHS SMAGID++ +K + E E +A SIVSSG Y++D +PDVL+YTGQGGNA DK++SDQKL RGNLALE+SL Sbjct: 165 FDALRRRFAQLEDAKEAVSGIIKRPDLKSGSTCMGRGVRTNTKKRPGIVPGVEIGDVFFFRFEMCLVGLHSPSMAGIDYLVVKGETEEEPIATSIVSSGYYDNDEGNPDVLIYTGQGGNADKDKQSSDQKLERGNLALEKSL 306
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: SUVH3_ARATH (Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Arabidopsis thaliana GN=SUVH3 PE=2 SV=2) HSP 1 Score: 164.081 bits (414), Expect = 1.876e-46 Identity = 80/142 (56.34%), Postives = 106/142 (74.65%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNASADKEASDQKLVRGNLALERSL 427 F+A+RR+LSQ+E K + S KA + + GVRTN KKR+G VPG+E+GDIFF R+E+ L+GLH Q+MAGID++ KA + E +A SIVSSG YE +A+DP+ L+Y+GQGGNA +++ASDQKL RGNLALE SL Sbjct: 170 FDAVRRRLSQVEFTKSATS--------KAAGTLMSNGVRTNMKKRVGTVPGIEVGDIFFSRIEMCLVGLHMQTMAGIDYIISKAGSDEESLATSIVSSGRYEGEAQDPESLIYSGQGGNADKNRQASDQKLERGNLALENSL 303
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: SUVH1_TOBAC (Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Nicotiana tabacum GN=SUVH1 PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 2.978e-41 Identity = 79/142 (55.63%), Postives = 109/142 (76.76%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNASADKEASDQKLVRGNLALERSL 427 F+ RR+++Q++++++ +R +LKA N++ TKGVRTN KRIG PG+E+GDIFFFRMEL L+GLH+ +MAGID+M +K ++ E +A+SIVSSGGY+DD D DVL+YTGQGG D + DQKL RGNLALE+S+ Sbjct: 220 FDLFRRRMTQIDESRDGPGS-GRRPDLKASNMLMTKGVRTNQTKRIGNAPGIEVGDIFFFRMELCLVGLHAPTMAGIDYMSVKLTMDEEPLAVSIVSSGGYDDDGGDGDVLIYTGQGGVQRKDGQVFDQKLERGNLALEKSV 360
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: SUVH2_ARATH (Histone-lysine N-methyltransferase family member SUVH2 OS=Arabidopsis thaliana GN=SUVH2 PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.515e-31 Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = 2 Query: 68 KRANLKAGNIMFTKGVRTNGKKRI-GVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNASADKEASDQKLVRGNLALERSL 427 +R+++ A IM +G+ N K I G V GVE+GDIFF+RMEL ++GLH Q+ AGID + + GE +A SIV SGGYEDD + DVLVYTG GG K+ +Q+LV GNL +ERS+ Sbjct: 182 RRSDMAAAYIMRDRGLWLNYDKHIVGPVTGVEVGDIFFYRMELCVLGLHGQTQAGIDCLTAERSATGEPIATSIVVSGGYEDDEDTGDVLVYTGHGGQDHQHKQCDNQRLVGGNLGMERSM 302
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: SUVH9_ARATH (Histone-lysine N-methyltransferase family member SUVH9 OS=Arabidopsis thaliana GN=SUVH9 PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 7.671e-29 Identity = 57/116 (49.14%), Postives = 78/116 (67.24%), Query Frame = 2 Query: 83 KAGNIMFTKGVRTNGKKRI-GVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNASADKEASDQKLVRGNLALERSL 427 KAG++M + N KRI G +PGV++GDIFFFR EL ++GLH +GIDF+ GE +A S++ SGGYEDD + DV++YTGQGG ++A Q+L GNLA+ERS+ Sbjct: 185 KAGSMMRDCMLWMNRDKRIVGSIPGVQVGDIFFFRFELCVMGLHGHPQSGIDFLTGSLSSNGEPIATSVIVSGGYEDDDDQGDVIMYTGQGGQDRLGRQAEHQRLEGGNLAMERSM 300
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: SUVH5_ARATH (Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana GN=SUVH5 PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.246e-26 Identity = 69/150 (46.00%), Postives = 90/150 (60.00%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLK----AGNIMFTKGVRT-NGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNASADKE---ASDQKLVRGNLALERSL 427 F +K+ Q E+A+ + N K A I+ +KG +G + IG VPGVE+GD F +RMEL L+G+H S +GID+M D GE VA SIVSSGGY D ++ DVL+YTGQGGN K DQ+LV GNLAL+ S+ Sbjct: 317 FHETCKKIMQEEEARPRKRD---GGNFKVVCEASKILKSKGKNLYSGTQIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYM---KDDGGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSI 460
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: YDG1_ARATH (YDG domain-containing protein At5g47150 OS=Arabidopsis thaliana GN=At5g47150 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.270e-26 Identity = 55/121 (45.45%), Postives = 80/121 (66.12%), Query Frame = 2 Query: 71 RANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGY-EDDAEDPDVLVYTGQGGNA-SADKEASDQKLVRGNLALERSL 427 R +LK ++ G + N +KRIG VPG+ IGD+F ++ EL ++GLHS+ M GID++ + D R+ SIV+S GY +D + V+VYTG+GGN + K+ DQKLV+GNLAL S+ Sbjct: 153 RIDLKTLTVLEKMGKQVNTEKRIGSVPGINIGDVFQYKTELRVVGLHSKPMCGIDYIKLGDD----RITTSIVASEGYGYNDTYNSGVMVYTGEGGNVINKQKKTEDQKLVKGNLALATSM 269
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: SUVH6_ARATH (Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana GN=SUVH6 PE=2 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 8.052e-24 Identity = 67/153 (43.79%), Postives = 88/153 (57.52%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAK-ESHSEIFK--RANLKAGNIMFTKGVRTN-GKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGN-------ASADKEASDQKLVRGNLALERSL 427 F + RK+ Q ++AK E K R + +A I+ G N G +G VPGVE+GD F +RMEL ++G+H S AGID+M +VA SIV+SGGY+D ++ DVL YTGQGGN KE DQKL+ GNLAL S+ Sbjct: 280 FHGVCRKILQEDEAKPEDQRRKGKGLRIDFEASTILKRNGKFLNSGVHILGEVPGVEVGDEFQYRMELNILGIHKPSQAGIDYMKYGK----AKVATSIVASGGYDDHLDNSDVLTYTGQGGNVMQVKKKGEELKEPEDQKLITGNLALATSI 428
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: SUVH7_ARATH (Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH7 OS=Arabidopsis thaliana GN=SUVH7 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.105e-23 Identity = 59/144 (40.97%), Postives = 89/144 (61.81%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSE-IFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFM-PMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNASADKEASDQKLVRGNLALERSL 427 F+A+RR+L Q+ +H E I A +GN GV+TN ++RIG VPG+ +GDIF++ E+ L+GLH + GIDF ++ +EG A+ +V++G Y+ + E D L+Y+GQGG A DQ++ GNLALE S+ Sbjct: 189 FDAVRRRLCQI-----NHPEDILTTA---SGNCT-KMGVKTNTRRRIGAVPGIHVGDIFYYWGEMCLVGLHKSNYGGIDFFTAAESAVEGH-AAMCVVTAGQYDGETEGLDTLIYSGQGG-TDVYGNARDQEMKGGNLALEASV 321
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Match: SUVH8_ARATH (Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8 OS=Arabidopsis thaliana GN=SUVH8 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.432e-23 Identity = 56/142 (39.44%), Postives = 81/142 (57.04%), Query Frame = 2 Query: 2 FEALRRKLSQMEDAKESHSEIFKRANLKAGNIMFTKGVRTNGKKRIGVVPGVEIGDIFFFRMELILIGLHSQSMAGIDFMPMKADIEGERVAISIVSSGGYEDDAEDPDVLVYTGQGGNASADKEASDQKLVRGNLALERSL 427 F+A+RR+L Q+ K+ L A GVRTN +RIG +PGV++GDIF++ E+ L+GLH + GID + K A S+V+SG Y+++ ED + L+Y+G GG + DQ L RGN ALE S+ Sbjct: 272 FDAVRRRLCQLNYRKDK--------ILTASTNCMNLGVRTNMTRRIGPIPGVQVGDIFYYWCEMCLVGLHRNTAGGIDSLLAKESGVDGPAATSVVTSGKYDNETEDLETLIYSGHGG------KPCDQVLQRGNRALEASV 399 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0000159 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 20
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000159 ID=g.arboreum_cottongen_reftransV1_0000159; Name=g.arboreum_cottongen_reftransV1_0000159; organism=Gossypium arboreum; type=contig; length=427bpback to top |