g.arboreum_cottongen_reftransV1_0007404, g.arboreum_cottongen_reftransV1_0007404 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: G7JS42_MEDTR (Phosphoinositide phosphatase SAC4 OS=Medicago truncatula GN=MTR_4g124630 PE=4 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 5.884e-37 Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 2 Query: 2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322 NRLRFLHWDLHKH +SK+TNVLLLLGKVA YALTLTGFFYC+V+S LRPE+C+ WPS++++D G SP + + NE A+ LE + N +N NHS KPP Q G Sbjct: 384 NRLRFLHWDLHKHFQSKATNVLLLLGKVAAYALTLTGFFYCQVSSTLRPEDCLKWPSTDDVDKGSFSPTVHVEYDNEDANDLERKPSDEINVSNENHSAKPPRLQNG 490
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: A0A072UTN6_MEDTR (Phosphoinositide phosphatase SAC4 OS=Medicago truncatula GN=MTR_4g124630 PE=4 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 6.471e-37 Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 2 Query: 2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322 NRLRFLHWDLHKH +SK+TNVLLLLGKVA YALTLTGFFYC+V+S LRPE+C+ WPS++++D G SP + + NE A+ LE + N +N NHS KPP Q G Sbjct: 384 NRLRFLHWDLHKHFQSKATNVLLLLGKVAAYALTLTGFFYCQVSSTLRPEDCLKWPSTDDVDKGSFSPTVHVEYDNEDANDLERKPSDEINVSNENHSAKPPRLQNG 490
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: D7TC94_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g00440 PE=4 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 1.957e-36 Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 2 Query: 2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322 NRL+FLHWDLH+HSRSK+TNVLLLLG+VA+YALTLTGFFY +VT L+PE+C+ P EN D D+S + C++ NE D LE G NN ANGNHSVKPP Q+G Sbjct: 378 NRLKFLHWDLHRHSRSKATNVLLLLGRVASYALTLTGFFYRQVTPDLKPEDCLKGPQLENSDMSDLSLHENCESHNEDDDNLERKFSGGNNIANGNHSVKPPMLQKG 484
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: I1LYA9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 8.510e-35 Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 2 Query: 2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322 NRLRFLHWDLHKH +SK+TNVL LLGKVA YALTLT FFYC+ T LRPEE + W S++++D+G SP ++ ++ N A+ LE NN AN NHSVKPP QRG Sbjct: 388 NRLRFLHWDLHKHFQSKATNVLQLLGKVAAYALTLTSFFYCQTTPTLRPEESLKWQSTDSVDEGTFSPTRHANDDNGDANNLERKPSEGNNDANENHSVKPPMLQRG 494
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: I1LYA8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 8.523e-35 Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 2 Query: 2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322 NRLRFLHWDLHKH +SK+TNVL LLGKVA YALTLT FFYC+ T LRPEE + W S++++D+G SP ++ ++ N A+ LE NN AN NHSVKPP QRG Sbjct: 388 NRLRFLHWDLHKHFQSKATNVLQLLGKVAAYALTLTSFFYCQTTPTLRPEESLKWQSTDSVDEGTFSPTRHANDDNGDANNLERKPSEGNNDANENHSVKPPMLQRG 494
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Match: SAC3_ARATH (Phosphoinositide phosphatase SAC3 OS=Arabidopsis thaliana GN=SAC3 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.506e-22 Identity = 56/107 (52.34%), Postives = 64/107 (59.81%), Query Frame = 2 Query: 2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322 NRLRFLHWDLHKH RSK+ NVL LL KVA AL LT FY +VT A+ E+ M+ SS + D GD+SP D+ N D LE N A G VKPP Q G Sbjct: 373 NRLRFLHWDLHKHFRSKTKNVLALLCKVATCALMLTDLFYYQVTPAMTIEDSMSLSSSSDADTGDISPHTSSDDDNGDHDSLEKKSSRSKNIAYGKCDVKPPRLQSG 479
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Match: SAC4_ARATH (Phosphoinositide phosphatase SAC4 OS=Arabidopsis thaliana GN=SAC4 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.715e-22 Identity = 56/107 (52.34%), Postives = 66/107 (61.68%), Query Frame = 2 Query: 2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322 NRLRFLHWDLHKH SK+ NVL LLGKVA AL LTGFFY ++T A++ E M+ SS D D SP D+ + D LE N N ANG++ VKP Q G Sbjct: 382 NRLRFLHWDLHKHFHSKTENVLALLGKVAACALMLTGFFYYQLTPAMKLEGYMSLSSS----DADTSPHNSSDDDSRDYDSLEKNCRPSKNVANGDYDVKPSRLQSG 484
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Match: SAC2_ARATH (Phosphoinositide phosphatase SAC2 OS=Arabidopsis thaliana GN=SAC2 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 4.227e-16 Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 2 Query: 2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTW-PSSENIDDGDMS---PPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322 +RLR LHWDLHKHSR K TNVL +LG++A YAL LT FYC++T LR E PS+ DDG+ S PP + +E A L + D+ A + + Q+G Sbjct: 378 DRLRPLHWDLHKHSRKKGTNVLAILGRLATYALNLTSIFYCQLTPDLRGEGFQNQNPSTLENDDGECSTYDPP----SKDETAPNLVVENGNDSKDAKEDQQKEVTMLQKG 484
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Match: SAC1_ARATH (Phosphoinositide phosphatase SAC1 OS=Arabidopsis thaliana GN=SAC1 PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 2.126e-8 Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 2 Query: 2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFY 121 N L+F+HWD HK ++SKS NVL +LG VA+ AL LTG ++ Sbjct: 393 NHLKFIHWDFHKFAKSKSANVLAVLGAVASEALDLTGLYF 432 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0007404 ID=g.arboreum_cottongen_reftransV1_0007404; Name=g.arboreum_cottongen_reftransV1_0007404; organism=Gossypium arboreum; type=contig; length=322bpback to top |