g.arboreum_cottongen_reftransV1_0007404, g.arboreum_cottongen_reftransV1_0007404 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0007404
Unique Name	g.arboreum_cottongen_reftransV1_0007404
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	322

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr1	chromosome	g.arboreum_cottongen_reftransV1_0007404:1..321 . Chr1:2333631..2334384 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: A0A0B0PNZ6_GOSAR (Polyphosphoinositide phosphatase OS=Gossypium arboreum GN=F383_06022 PE=4 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.972e-51
Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 2

Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHK+SRSK+TNVLLLLGKVA YAL LTGFFYCR+TS L+PEECM WPS ENIDD DMS  KY +NVNE A RLEGN+ G NN  NGNHS+KPPTFQRG
Sbjct:  387 NRLRFLHWDLHKYSRSKATNVLLLLGKVAAYALMLTGFFYCRLTSTLKPEECMAWPSVENIDDSDMSHHKYLNNVNEDAYRLEGNYSGYNNITNGNHSLKPPTFQRG 493

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: A0A0D2V7X5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G092400 PE=4 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.337e-51
Identity = 84/107 (78.50%), Postives = 92/107 (85.98%), Query Frame = 2

Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHK+SRSK+TNVLLLLGKVA YAL LTGFFYCR+TS L+PEEC+ WPS ENIDD DMS  KY +NVNE A RLEGN+ G NN  NGNHS+KPPTFQRG
Sbjct:  387 NRLRFLHWDLHKYSRSKATNVLLLLGKVAAYALMLTGFFYCRLTSTLKPEECVAWPSVENIDDSDMSHHKYLNNVNEDAYRLEGNYSGYNNITNGNHSLKPPTFQRG 493

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: A0A0D2U928_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G092400 PE=4 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.256e-50
Identity = 84/107 (78.50%), Postives = 92/107 (85.98%), Query Frame = 2

Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHK+SRSK+TNVLLLLGKVA YAL LTGFFYCR+TS L+PEEC+ WPS ENIDD DMS  KY +NVNE A RLEGN+ G NN  NGNHS+KPPTFQRG
Sbjct:  387 NRLRFLHWDLHKYSRSKATNVLLLLGKVAAYALMLTGFFYCRLTSTLKPEECVAWPSVENIDDSDMSHHKYLNNVNEDAYRLEGNYSGYNNITNGNHSLKPPTFQRG 493

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: A0A0D2R4U5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G092400 PE=4 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.672e-50
Identity = 84/107 (78.50%), Postives = 92/107 (85.98%), Query Frame = 2

Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHK+SRSK+TNVLLLLGKVA YAL LTGFFYCR+TS L+PEEC+ WPS ENIDD DMS  KY +NVNE A RLEGN+ G NN  NGNHS+KPPTFQRG
Sbjct:  387 NRLRFLHWDLHKYSRSKATNVLLLLGKVAAYALMLTGFFYCRLTSTLKPEECVAWPSVENIDDSDMSHHKYLNNVNEDAYRLEGNYSGYNNITNGNHSLKPPTFQRG 493

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: A0A0D2SPY6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G092400 PE=4 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.651e-50
Identity = 84/107 (78.50%), Postives = 92/107 (85.98%), Query Frame = 2

Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHK+SRSK+TNVLLLLGKVA YAL LTGFFYCR+TS L+PEEC+ WPS ENIDD DMS  KY +NVNE A RLEGN+ G NN  NGNHS+KPPTFQRG
Sbjct:  387 NRLRFLHWDLHKYSRSKATNVLLLLGKVAAYALMLTGFFYCRLTSTLKPEECVAWPSVENIDDSDMSHHKYLNNVNEDAYRLEGNYSGYNNITNGNHSLKPPTFQRG 493

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: A0A067G2D2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g038661mg PE=4 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.220e-43
Identity = 74/107 (69.16%), Postives = 87/107 (81.31%), Query Frame = 2

Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHKHSRSK+TNVLLLLGKVA YALTLTGFFYCRVT +LRPEE +   SSEN+++G++SP  +C N  E AD+LE N  GDNN ANGNH ++ P  Q+G
Sbjct:  376 NRLRFLHWDLHKHSRSKATNVLLLLGKVATYALTLTGFFYCRVTPSLRPEELINSTSSENVNNGNLSPQNHCSNDIEDADKLERNLSGDNNVANGNHPIRLPMLQKG 482

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: V4WHI1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007455mg PE=4 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.703e-42
Identity = 73/107 (68.22%), Postives = 86/107 (80.37%), Query Frame = 2

Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHKHSRSK+TNVLLLLGKVA YALTLTGFFYCRVT +LRPEE +   SSEN+++G++SP  +C N  E AD+LE N  GD N ANGNH ++ P  Q+G
Sbjct:  376 NRLRFLHWDLHKHSRSKATNVLLLLGKVATYALTLTGFFYCRVTPSLRPEELINSTSSENVNNGNLSPQNHCSNDIEDADKLERNLSGDKNVANGNHPIRLPMLQKG 482

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: M5VWR5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001260mg PE=4 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.304e-41
Identity = 73/107 (68.22%), Postives = 83/107 (77.57%), Query Frame = 2

Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRL+FLHWDLHKHSRSK+TN LLLLGKVA YALTLTGFFYC+V  ALRPE  + WPSS N ++GD+SP ++  N NE AD +E    G  N ANGNHSVKP TFQ G
Sbjct:  411 NRLKFLHWDLHKHSRSKATNALLLLGKVATYALTLTGFFYCQVNPALRPEGVIKWPSSGNFENGDLSPQEHSANGNEDADNIEKTPSGSKNIANGNHSVKPSTFQSG 517

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: W9SK95_9ROSA (Polyphosphoinositide phosphatase OS=Morus notabilis GN=L484_019556 PE=4 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.919e-40
Identity = 71/107 (66.36%), Postives = 87/107 (81.31%), Query Frame = 2

Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHKHSRSK+TN LLLLGKVA YALTLTGFFYC+VT AL PE  + WPS EN+++G++S  ++ ++ NE A+ L+G   GD++ ANGNHSVK P FQRG
Sbjct:  385 NRLRFLHWDLHKHSRSKATNALLLLGKVAAYALTLTGFFYCQVTPALVPEFSLKWPSFENVNNGELSSERHSNDNNEDAENLDGKASGDSSIANGNHSVKQPMFQRG 491

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: A0A072URK4_MEDTR (Phosphoinositide phosphatase SAC4 OS=Medicago truncatula GN=MTR_4g124630 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.727e-37
Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 2

Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHKH +SK+TNVLLLLGKVA YALTLTGFFYC+V+S LRPE+C+ WPS++++D G  SP  + +  NE A+ LE     + N +N NHS KPP  Q G
Sbjct:  384 NRLRFLHWDLHKHFQSKATNVLLLLGKVAAYALTLTGFFYCQVSSTLRPEDCLKWPSTDDVDKGSFSPTVHVEYDNEDANDLERKPSDEINVSNENHSAKPPRLQNG 490

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Match: SAC3_ARATH (Phosphoinositide phosphatase SAC3 OS=Arabidopsis thaliana GN=SAC3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.506e-22
Identity = 56/107 (52.34%), Postives = 64/107 (59.81%), Query Frame = 2

Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHKH RSK+ NVL LL KVA  AL LT  FY +VT A+  E+ M+  SS + D GD+SP    D+ N   D LE       N A G   VKPP  Q G
Sbjct:  373 NRLRFLHWDLHKHFRSKTKNVLALLCKVATCALMLTDLFYYQVTPAMTIEDSMSLSSSSDADTGDISPHTSSDDDNGDHDSLEKKSSRSKNIAYGKCDVKPPRLQSG 479

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Match: SAC4_ARATH (Phosphoinositide phosphatase SAC4 OS=Arabidopsis thaliana GN=SAC4 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.715e-22
Identity = 56/107 (52.34%), Postives = 66/107 (61.68%), Query Frame = 2

Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHKH  SK+ NVL LLGKVA  AL LTGFFY ++T A++ E  M+  SS    D D SP    D+ +   D LE N     N ANG++ VKP   Q G
Sbjct:  382 NRLRFLHWDLHKHFHSKTENVLALLGKVAACALMLTGFFYYQLTPAMKLEGYMSLSSS----DADTSPHNSSDDDSRDYDSLEKNCRPSKNVANGDYDVKPSRLQSG 484

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Match: SAC2_ARATH (Phosphoinositide phosphatase SAC2 OS=Arabidopsis thaliana GN=SAC2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.227e-16
Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 2

Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTW-PSSENIDDGDMS---PPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            +RLR LHWDLHKHSR K TNVL +LG++A YAL LT  FYC++T  LR E      PS+   DDG+ S   PP    + +E A  L   +  D+  A  +   +    Q+G
Sbjct:  378 DRLRPLHWDLHKHSRKKGTNVLAILGRLATYALNLTSIFYCQLTPDLRGEGFQNQNPSTLENDDGECSTYDPP----SKDETAPNLVVENGNDSKDAKEDQQKEVTMLQKG 484

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Match: SAC1_ARATH (Phosphoinositide phosphatase SAC1 OS=Arabidopsis thaliana GN=SAC1 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.126e-8
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 2

Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFY 121
            N L+F+HWD HK ++SKS NVL +LG VA+ AL LTG ++
Sbjct:  393 NHLKFIHWDFHKFAKSKSANVLAVLGAVASEALDLTGLYF 432

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0PNZ6_GOSAR	6.972e-51	79.44	Polyphosphoinositide phosphatase OS=Gossypium arbo...	[more]
A0A0D2V7X5_GOSRA	7.337e-51	78.50	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2U928_GOSRA	2.256e-50	78.50	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2R4U5_GOSRA	2.672e-50	78.50	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2SPY6_GOSRA	3.651e-50	78.50	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A067G2D2_CITSI	5.220e-43	69.16	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]
V4WHI1_9ROSI	8.703e-42	68.22	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
M5VWR5_PRUPE	5.304e-41	68.22	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
W9SK95_9ROSA	1.919e-40	66.36	Polyphosphoinositide phosphatase OS=Morus notabili...	[more]
A0A072URK4_MEDTR	5.727e-37	61.68	Phosphoinositide phosphatase SAC4 OS=Medicago trun...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4


Match Name	E-value	Identity	Description
SAC3_ARATH	4.506e-22	52.34	Phosphoinositide phosphatase SAC3 OS=Arabidopsis t...	[more]
SAC4_ARATH	4.715e-22	52.34	Phosphoinositide phosphatase SAC4 OS=Arabidopsis t...	[more]
SAC2_ARATH	4.227e-16	43.24	Phosphoinositide phosphatase SAC2 OS=Arabidopsis t...	[more]
SAC1_ARATH	2.126e-8	57.50	Phosphoinositide phosphatase SAC1 OS=Arabidopsis t...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..38
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 39..105
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..19

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0007404 ID=g.arboreum_cottongen_reftransV1_0007404; Name=g.arboreum_cottongen_reftransV1_0007404; organism=Gossypium arboreum; type=contig; length=322bp
GAACCGTTTGAGATTCCTTCACTGGGATCTACACAAACATTCTCGGAGCA
AATCGACAAATGTTTTGCTACTTTTGGGTAAAGTGGCCAATTATGCATTA
ACGCTAACAGGTTTCTTTTATTGTCGGGTGACATCAGCCTTGAGACCTGA
GGAGTGTATGACATGGCCTTCCTCTGAGAATATTGATGATGGTGACATGT
CACCCCCAAAATACTGTGACAATGTTAACGAGGGTGCTGACAGATTGGAG
GGGAATCATTTTGGTGATAATAATACTGCTAATGGAAATCATTCTGTCAA
GCCTCCCACTTTCCAAAGAGGT

Search form

g.arboreum_cottongen_reftransV1_0007404, g.arboreum_cottongen_reftransV1_0007404 (contig) Gossypium arboreum

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