g.arboreum_cottongen_reftransV1_0011260, g.arboreum_cottongen_reftransV1_0011260 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011260
Unique Nameg.arboreum_cottongen_reftransV1_0011260
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length932
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0011260:1..932 .
Chr11:40976514..40980163 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: B9SVM0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0793910 PE=4 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 5.801e-66
Identity = 130/191 (68.06%), Postives = 148/191 (77.49%), Query Frame = 1
Query:  373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTE-----YTNSVPSGSTPLQHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            MGIF+RS VSRKPNE+MRLIVTTF+GV FGFLIG+SFP LSL+K NISS +L ++DI Y       YT S    ++    P  N+ S       KIW P NPRGAERLPPGI++AESD YLRRLWG PNEDL S PKYLVTFTVGY+QRKNIDA VKKFS NFT+LLFHYDG+ +EWDEFEWSK+AIHVS 
Sbjct:    1 MGIFSRSMVSRKPNETMRLIVTTFLGVAFGFLIGISFPALSLSKLNISSSLLPSVDISYINEKTFGYTWSSRKNNSTTGAPNSNDTS-------KIWAPLNPRGAERLPPGIIEAESDYYLRRLWGNPNEDLISKPKYLVTFTVGYDQRKNIDANVKKFSENFTVLLFHYDGRVSEWDEFEWSKRAIHVSA 184          
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: B9HLQ0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s18970g PE=4 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.732e-66
Identity = 131/192 (68.23%), Postives = 147/192 (76.56%), Query Frame = 1
Query:  373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTE------YTNSVPSGSTPLQHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            MGIF+RS   RKPNE++++I+TTF+GV FGFLIG+SFP LSLTK NIS   + +IDI Y E        +S  + S  +Q P  NN S       KIWVPSNPRGAERLPP IV AESDLYLRRLWG PNEDLTSTPKYLVTFTVGY+QR NIDA VKKFS NFTILLFHYDG+  EWDEFEWS +AIHVSV
Sbjct:    1 MGIFSRSAAGRKPNETIKIILTTFLGVAFGFLIGVSFPTLSLTKLNISPNFIPSIDISYKEGLTPQNTRSSKGNNSGSMQAPNLNNTS-------KIWVPSNPRGAERLPPRIVAAESDLYLRRLWGNPNEDLTSTPKYLVTFTVGYDQRMNIDACVKKFSENFTILLFHYDGRIAEWDEFEWSTRAIHVSV 185          
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A0D2RGB8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G161300 PE=4 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.373e-65
Identity = 132/186 (70.97%), Postives = 141/186 (75.81%), Query Frame = 1
Query:  373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            MGIFTRS VSRKPNESMRLIVT FVGVVFGFLIGL FPKLSLTKF++S+ I T ID KYTEYT   PS ST + HP+ NN SSAN T KKIWVPSNPRGAERLPPGIV+AESDLYLRRLWGKP+E                            FSGNFTILLFHYDG+TTEWDEFEWSK+AIHVSV
Sbjct:    1 MGIFTRSVVSRKPNESMRLIVTAFVGVVFGFLIGLCFPKLSLTKFSLSTSIFTAIDFKYTEYTKLGPSSSTRVSHPVVNNGSSANVTLKKIWVPSNPRGAERLPPGIVRAESDLYLRRLWGKPSE----------------------------FSGNFTILLFHYDGRTTEWDEFEWSKKAIHVSV 158          
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: M5XXP0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006602mg PE=4 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.473e-65
Identity = 133/193 (68.91%), Postives = 149/193 (77.20%), Query Frame = 1
Query:  373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQ-------HPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            MG  +RS   RKPNE+MRLIVTTFVGVVFGFLIG+SFP LSLTK N+SS +L  +D+ Y E   S  S  T L        +       S+N T + IWVPSNPRGAERLPPGI+ AESD YLRRLWGKP+EDLT  P+YLVTFTVG NQ+KNIDAAVKKFS NFTILLFHYDGQTTEWDEFEWS++AIHVSV
Sbjct:    1 MGTLSRSAGGRKPNETMRLIVTTFVGVVFGFLIGVSFPTLSLTKLNLSSSLLPNVDLTYNEDQKSDISRQTILNAWSSTRSNNSSTKAQSSNGTGR-IWVPSNPRGAERLPPGILAAESDFYLRRLWGKPSEDLTIKPRYLVTFTVGLNQKKNIDAAVKKFSENFTILLFHYDGQTTEWDEFEWSERAIHVSV 192          
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: B9HTS4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s05730g PE=4 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 6.908e-64
Identity = 127/190 (66.84%), Postives = 140/190 (73.68%), Query Frame = 1
Query:  373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANA----TSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            MGI   S  SRKPNE+MR+++TTF GVVFGFLIG+SFP LSLTK N SSG    ID+ Y+E      +  +P      NN SS  A       KIWVPSNPRGAERLPPG V AESD YLRRLWG P EDLT  P+YLVTFTVGY+QRKNIDA VKKFS NFTILLFHYDG+ +EWDEFEWSK AIHVS 
Sbjct:    1 MGILALSAGSRKPNETMRILLTTFFGVVFGFLIGVSFPTLSLTKSNKSSGFFPVIDLAYSENKPGSKTVLSPWSSMKGNNSSSMQAPNSKDKSKIWVPSNPRGAERLPPGFVVAESDYYLRRLWGDPKEDLTRAPRYLVTFTVGYDQRKNIDACVKKFSENFTILLFHYDGRVSEWDEFEWSKSAIHVSA 190          
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A067GU77_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013577mg PE=4 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.996e-63
Identity = 131/200 (65.50%), Postives = 156/200 (78.00%), Query Frame = 1
Query:  352 SDEFLNRMGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQ--HPID-NNRSSANAT----SKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            + + LN+MG   RS+++RK NESMRLIVTTFVGVVFGF IG+SFP LSLTK  + S +L T++  Y E   S  S    L   +P++ NN SS  A     + KIWVP+NPRGAERLPP IV+AESD YLRRLWG PNEDLTS PKYLVTFTVGY+Q+ NI+AA+KKFS NFTI+LFHYDG+TTEW+EFEWSK+AIHVSV
Sbjct:    7 NQKILNKMGTAARSSINRKTNESMRLIVTTFVGVVFGFFIGVSFPTLSLTKLTLPSSLLPTVE--YVEDQRSGLSTQRFLNVFNPLNRNNGSSTRAQVLNDTSKIWVPTNPRGAERLPPKIVRAESDFYLRRLWGNPNEDLTSQPKYLVTFTVGYDQKNNINAAIKKFSDNFTIVLFHYDGRTTEWNEFEWSKRAIHVSV 204          
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A072TTK8_MEDTR (Lysine ketoglutarate reductase trans-splicing protein OS=Medicago truncatula GN=MTR_8g089815 PE=4 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 7.589e-63
Identity = 124/187 (66.31%), Postives = 154/187 (82.35%), Query Frame = 1
Query:  373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQH-PIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            MG  TRS+ +RKPNESMRL++TTFVG+VFGFLIG+S+P L+ TK  ISS +L +ID+   E      +G + +++   D+++      + KIWVPSNPRGAERLPP I++AESD YLRRLWG+P+EDLTS P+YLVTFTVGY+Q++NIDAAVKKFSG+FTILLFHYDG+TTEWDEFEWSKQAIHVSV
Sbjct:    1 MGTNTRSSTNRKPNESMRLVLTTFVGIVFGFLIGISYPTLT-TKLTISSRLLPSIDVSSIEDEYESGNGRSFMKNNSSDSSKYKLLNDTLKIWVPSNPRGAERLPPAIIEAESDFYLRRLWGEPSEDLTSKPRYLVTFTVGYDQKRNIDAAVKKFSGDFTILLFHYDGRTTEWDEFEWSKQAIHVSV 186          
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A059D7S9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03278 PE=4 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 9.224e-63
Identity = 123/190 (64.74%), Postives = 146/190 (76.84%), Query Frame = 1
Query:  373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPL----QHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            MG   RS   +K N++MRLI+TTF G+VFGF IG+SFP LSL KFN+ + + T  D+ Y+E   +  S  T L    +   +++   A   + KIW PSNPRGAERLPPGIV AESD YLRRLWGKP+EDLT+ P+YLVTFTVGYNQ+KNIDAAVKKFSGNFTILLFHYDG TTEWDE+EWSK+AIHVSV
Sbjct:    1 MGNPMRSAGCKKSNDTMRLIITTFFGIVFGFFIGVSFPTLSLIKFNLPTSLQTAHDVMYSEDPKTGLSTQTILNLSGEKGYNSSSDQAQNGTSKIWAPSNPRGAERLPPGIVTAESDFYLRRLWGKPSEDLTTKPRYLVTFTVGYNQQKNIDAAVKKFSGNFTILLFHYDGITTEWDEYEWSKRAIHVSV 190          
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A072VAT1_MEDTR (Lysine ketoglutarate reductase trans-splicing protein OS=Medicago truncatula GN=MTR_3g086610 PE=4 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.095e-62
Identity = 127/189 (67.20%), Postives = 145/189 (76.72%), Query Frame = 1
Query:  373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANATS---KKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            MG  TRS   RKP+E MRLIVTTF+GVVFGF +G+SFP LSLTKFN+ SG+L +ID+ Y E   +     + + +   N R+  N  S    KIWVPSNPRGAE LPPGIV+AESD YLRRLWGKP+EDLT  PKYLVTFTVGY  +KNIDAAVKKFS NFTILLFHYDG+  EWDEFEWSK+AIHVS 
Sbjct:    1 MGTVTRSPNGRKPSEIMRLIVTTFIGVVFGFFLGVSFPTLSLTKFNLPSGLLPSIDLSYIEERYTGRRAWSFINN--SNRRALPNRLSNDTSKIWVPSNPRGAESLPPGIVEAESDFYLRRLWGKPSEDLTFKPKYLVTFTVGYEMKKNIDAAVKKFSENFTILLFHYDGRANEWDEFEWSKKAIHVSA 187          
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A067GRJ5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013577mg PE=4 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.477e-62
Identity = 131/200 (65.50%), Postives = 156/200 (78.00%), Query Frame = 1
Query:  352 SDEFLNRMGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQ--HPID-NNRSSANAT----SKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            + + LN+MG   RS+++RK NESMRLIVTTFVGVVFGF IG+SFP LSLTK  + S +L T++  Y E   S  S    L   +P++ NN SS  A     + KIWVP+NPRGAERLPP IV+AESD YLRRLWG PNEDLTS PKYLVTFTVGY+Q+ NI+AA+KKFS NFTI+LFHYDG+TTEW+EFEWSK+AIHVSV
Sbjct:    7 NQKILNKMGTAARSSINRKTNESMRLIVTTFVGVVFGFFIGVSFPTLSLTKLTLPSSLLPTVE--YVEDQRSGLSTQRFLNVFNPLNRNNGSSTRAQVLNDTSKIWVPTNPRGAERLPPKIVRAESDFYLRRLWGNPNEDLTSQPKYLVTFTVGYDQKNNINAAIKKFSDNFTIVLFHYDGRTTEWNEFEWSKRAIHVSV 204          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9SVM0_RICCO5.801e-6668.06Putative uncharacterized protein OS=Ricinus commun... [more]
B9HLQ0_POPTR8.732e-6668.23Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0D2RGB8_GOSRA1.373e-6570.97Uncharacterized protein OS=Gossypium raimondii GN=... [more]
M5XXP0_PRUPE3.473e-6568.91Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9HTS4_POPTR6.908e-6466.84Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A067GU77_CITSI1.996e-6365.50Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A072TTK8_MEDTR7.589e-6366.31Lysine ketoglutarate reductase trans-splicing prot... [more]
A0A059D7S9_EUCGR9.224e-6364.74Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A072VAT1_MEDTR1.095e-6267.20Lysine ketoglutarate reductase trans-splicing prot... [more]
A0A067GRJ5_CITSI1.477e-6265.50Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011260 ID=g.arboreum_cottongen_reftransV1_0011260; Name=g.arboreum_cottongen_reftransV1_0011260; organism=Gossypium arboreum; type=contig; length=932bp
TTCAGGTCTTTTTTCCTTCACGTTTTCTATATTTTTTTTTCTGTTAGTAA
GGCAATCAAGAAGTTCGTTCTCTCAATTCTCTCAATTCTCGAGAGAGAAG
CATAAACTTATTTCTTGCATATTTTCAGTTAAAGAGGAGAAGGTGATTTT
TCTCGTGATTTAGAGCCATTTTAAATACAGTTTCAGTTTCCATCAGATCC
TTTTCAGTTGTTCTCAATTATCTTTCCATTCAGGTCCTTTTGCTGAGGGT
CTCTCTTTGTTTCATGGAGAATGGGCAACTGAATGCCTGCTAATTAATGC
TCAAAGCCTCTTGCAATCTGAATTGCCCATAGTTTGTTGTGAATATACAA
TTCAGACGAATTTTTAAATAGAATGGGGATCTTTACACGCAGTACGGTTA
GTAGAAAGCCAAATGAGAGCATGAGGCTTATTGTGACAACATTTGTTGGA
GTAGTTTTTGGCTTCTTAATTGGATTATCTTTCCCAAAATTGTCATTAAC
AAAGTTCAATATATCATCTGGCATTCTTACGACCATTGATATCAAATACA
CTGAATATACCAACTCAGTCCCCTCAGGCTCAACTCCTTTGCAGCATCCG
ATTGATAATAATAGAAGCTCTGCTAATGCCACATCAAAGAAGATTTGGGT
CCCATCAAATCCTCGAGGTGCGGAAAGACTACCACCTGGAATTGTTAAAG
CTGAATCAGACTTATACTTACGCAGATTGTGGGGCAAGCCGAATGAGGAC
TTGACCAGCACTCCAAAGTATCTTGTCACATTTACTGTTGGCTATAATCA
ACGAAAGAATATTGATGCTGCAGTTAAAAAGTTTTCAGGGAATTTTACCA
TCCTTCTCTTTCATTACGATGGTCAAACAACTGAATGGGATGAGTTTGAG
TGGTCAAAGCAGGCAATACATGTGAGTGTTCG
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