g.arboreum_cottongen_reftransV1_0011260, g.arboreum_cottongen_reftransV1_0011260 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: B9SVM0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0793910 PE=4 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 5.801e-66 Identity = 130/191 (68.06%), Postives = 148/191 (77.49%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTE-----YTNSVPSGSTPLQHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MGIF+RS VSRKPNE+MRLIVTTF+GV FGFLIG+SFP LSL+K NISS +L ++DI Y YT S ++ P N+ S KIW P NPRGAERLPPGI++AESD YLRRLWG PNEDL S PKYLVTFTVGY+QRKNIDA VKKFS NFT+LLFHYDG+ +EWDEFEWSK+AIHVS Sbjct: 1 MGIFSRSMVSRKPNETMRLIVTTFLGVAFGFLIGISFPALSLSKLNISSSLLPSVDISYINEKTFGYTWSSRKNNSTTGAPNSNDTS-------KIWAPLNPRGAERLPPGIIEAESDYYLRRLWGNPNEDLISKPKYLVTFTVGYDQRKNIDANVKKFSENFTVLLFHYDGRVSEWDEFEWSKRAIHVSA 184
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: B9HLQ0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s18970g PE=4 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 8.732e-66 Identity = 131/192 (68.23%), Postives = 147/192 (76.56%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTE------YTNSVPSGSTPLQHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MGIF+RS RKPNE++++I+TTF+GV FGFLIG+SFP LSLTK NIS + +IDI Y E +S + S +Q P NN S KIWVPSNPRGAERLPP IV AESDLYLRRLWG PNEDLTSTPKYLVTFTVGY+QR NIDA VKKFS NFTILLFHYDG+ EWDEFEWS +AIHVSV Sbjct: 1 MGIFSRSAAGRKPNETIKIILTTFLGVAFGFLIGVSFPTLSLTKLNISPNFIPSIDISYKEGLTPQNTRSSKGNNSGSMQAPNLNNTS-------KIWVPSNPRGAERLPPRIVAAESDLYLRRLWGNPNEDLTSTPKYLVTFTVGYDQRMNIDACVKKFSENFTILLFHYDGRIAEWDEFEWSTRAIHVSV 185
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A0D2RGB8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G161300 PE=4 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 1.373e-65 Identity = 132/186 (70.97%), Postives = 141/186 (75.81%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MGIFTRS VSRKPNESMRLIVT FVGVVFGFLIGL FPKLSLTKF++S+ I T ID KYTEYT PS ST + HP+ NN SSAN T KKIWVPSNPRGAERLPPGIV+AESDLYLRRLWGKP+E FSGNFTILLFHYDG+TTEWDEFEWSK+AIHVSV Sbjct: 1 MGIFTRSVVSRKPNESMRLIVTAFVGVVFGFLIGLCFPKLSLTKFSLSTSIFTAIDFKYTEYTKLGPSSSTRVSHPVVNNGSSANVTLKKIWVPSNPRGAERLPPGIVRAESDLYLRRLWGKPSE----------------------------FSGNFTILLFHYDGRTTEWDEFEWSKKAIHVSV 158
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: M5XXP0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006602mg PE=4 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 3.473e-65 Identity = 133/193 (68.91%), Postives = 149/193 (77.20%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQ-------HPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MG +RS RKPNE+MRLIVTTFVGVVFGFLIG+SFP LSLTK N+SS +L +D+ Y E S S T L + S+N T + IWVPSNPRGAERLPPGI+ AESD YLRRLWGKP+EDLT P+YLVTFTVG NQ+KNIDAAVKKFS NFTILLFHYDGQTTEWDEFEWS++AIHVSV Sbjct: 1 MGTLSRSAGGRKPNETMRLIVTTFVGVVFGFLIGVSFPTLSLTKLNLSSSLLPNVDLTYNEDQKSDISRQTILNAWSSTRSNNSSTKAQSSNGTGR-IWVPSNPRGAERLPPGILAAESDFYLRRLWGKPSEDLTIKPRYLVTFTVGLNQKKNIDAAVKKFSENFTILLFHYDGQTTEWDEFEWSERAIHVSV 192
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: B9HTS4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s05730g PE=4 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 6.908e-64 Identity = 127/190 (66.84%), Postives = 140/190 (73.68%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANA----TSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MGI S SRKPNE+MR+++TTF GVVFGFLIG+SFP LSLTK N SSG ID+ Y+E + +P NN SS A KIWVPSNPRGAERLPPG V AESD YLRRLWG P EDLT P+YLVTFTVGY+QRKNIDA VKKFS NFTILLFHYDG+ +EWDEFEWSK AIHVS Sbjct: 1 MGILALSAGSRKPNETMRILLTTFFGVVFGFLIGVSFPTLSLTKSNKSSGFFPVIDLAYSENKPGSKTVLSPWSSMKGNNSSSMQAPNSKDKSKIWVPSNPRGAERLPPGFVVAESDYYLRRLWGDPKEDLTRAPRYLVTFTVGYDQRKNIDACVKKFSENFTILLFHYDGRVSEWDEFEWSKSAIHVSA 190
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A067GU77_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013577mg PE=4 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 1.996e-63 Identity = 131/200 (65.50%), Postives = 156/200 (78.00%), Query Frame = 1 Query: 352 SDEFLNRMGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQ--HPID-NNRSSANAT----SKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 + + LN+MG RS+++RK NESMRLIVTTFVGVVFGF IG+SFP LSLTK + S +L T++ Y E S S L +P++ NN SS A + KIWVP+NPRGAERLPP IV+AESD YLRRLWG PNEDLTS PKYLVTFTVGY+Q+ NI+AA+KKFS NFTI+LFHYDG+TTEW+EFEWSK+AIHVSV Sbjct: 7 NQKILNKMGTAARSSINRKTNESMRLIVTTFVGVVFGFFIGVSFPTLSLTKLTLPSSLLPTVE--YVEDQRSGLSTQRFLNVFNPLNRNNGSSTRAQVLNDTSKIWVPTNPRGAERLPPKIVRAESDFYLRRLWGNPNEDLTSQPKYLVTFTVGYDQKNNINAAIKKFSDNFTIVLFHYDGRTTEWNEFEWSKRAIHVSV 204
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A072TTK8_MEDTR (Lysine ketoglutarate reductase trans-splicing protein OS=Medicago truncatula GN=MTR_8g089815 PE=4 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 7.589e-63 Identity = 124/187 (66.31%), Postives = 154/187 (82.35%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQH-PIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MG TRS+ +RKPNESMRL++TTFVG+VFGFLIG+S+P L+ TK ISS +L +ID+ E +G + +++ D+++ + KIWVPSNPRGAERLPP I++AESD YLRRLWG+P+EDLTS P+YLVTFTVGY+Q++NIDAAVKKFSG+FTILLFHYDG+TTEWDEFEWSKQAIHVSV Sbjct: 1 MGTNTRSSTNRKPNESMRLVLTTFVGIVFGFLIGISYPTLT-TKLTISSRLLPSIDVSSIEDEYESGNGRSFMKNNSSDSSKYKLLNDTLKIWVPSNPRGAERLPPAIIEAESDFYLRRLWGEPSEDLTSKPRYLVTFTVGYDQKRNIDAAVKKFSGDFTILLFHYDGRTTEWDEFEWSKQAIHVSV 186
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A059D7S9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03278 PE=4 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 9.224e-63 Identity = 123/190 (64.74%), Postives = 146/190 (76.84%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPL----QHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MG RS +K N++MRLI+TTF G+VFGF IG+SFP LSL KFN+ + + T D+ Y+E + S T L + +++ A + KIW PSNPRGAERLPPGIV AESD YLRRLWGKP+EDLT+ P+YLVTFTVGYNQ+KNIDAAVKKFSGNFTILLFHYDG TTEWDE+EWSK+AIHVSV Sbjct: 1 MGNPMRSAGCKKSNDTMRLIITTFFGIVFGFFIGVSFPTLSLIKFNLPTSLQTAHDVMYSEDPKTGLSTQTILNLSGEKGYNSSSDQAQNGTSKIWAPSNPRGAERLPPGIVTAESDFYLRRLWGKPSEDLTTKPRYLVTFTVGYNQQKNIDAAVKKFSGNFTILLFHYDGITTEWDEYEWSKRAIHVSV 190
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A072VAT1_MEDTR (Lysine ketoglutarate reductase trans-splicing protein OS=Medicago truncatula GN=MTR_3g086610 PE=4 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 1.095e-62 Identity = 127/189 (67.20%), Postives = 145/189 (76.72%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANATS---KKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MG TRS RKP+E MRLIVTTF+GVVFGF +G+SFP LSLTKFN+ SG+L +ID+ Y E + + + + N R+ N S KIWVPSNPRGAE LPPGIV+AESD YLRRLWGKP+EDLT PKYLVTFTVGY +KNIDAAVKKFS NFTILLFHYDG+ EWDEFEWSK+AIHVS Sbjct: 1 MGTVTRSPNGRKPSEIMRLIVTTFIGVVFGFFLGVSFPTLSLTKFNLPSGLLPSIDLSYIEERYTGRRAWSFINN--SNRRALPNRLSNDTSKIWVPSNPRGAESLPPGIVEAESDFYLRRLWGKPSEDLTFKPKYLVTFTVGYEMKKNIDAAVKKFSENFTILLFHYDGRANEWDEFEWSKKAIHVSA 187
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A067GRJ5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013577mg PE=4 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 1.477e-62 Identity = 131/200 (65.50%), Postives = 156/200 (78.00%), Query Frame = 1 Query: 352 SDEFLNRMGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQ--HPID-NNRSSANAT----SKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 + + LN+MG RS+++RK NESMRLIVTTFVGVVFGF IG+SFP LSLTK + S +L T++ Y E S S L +P++ NN SS A + KIWVP+NPRGAERLPP IV+AESD YLRRLWG PNEDLTS PKYLVTFTVGY+Q+ NI+AA+KKFS NFTI+LFHYDG+TTEW+EFEWSK+AIHVSV Sbjct: 7 NQKILNKMGTAARSSINRKTNESMRLIVTTFVGVVFGFFIGVSFPTLSLTKLTLPSSLLPTVE--YVEDQRSGLSTQRFLNVFNPLNRNNGSSTRAQVLNDTSKIWVPTNPRGAERLPPKIVRAESDFYLRRLWGNPNEDLTSQPKYLVTFTVGYDQKNNINAAIKKFSDNFTIVLFHYDGRTTEWNEFEWSKRAIHVSV 204 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011260 ID=g.arboreum_cottongen_reftransV1_0011260; Name=g.arboreum_cottongen_reftransV1_0011260; organism=Gossypium arboreum; type=contig; length=932bpback to top |