g.arboreum_cottongen_reftransV1_0010388, g.arboreum_cottongen_reftransV1_0010388 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010388
Unique Nameg.arboreum_cottongen_reftransV1_0010388
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1961
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0010388:1..1961 .
Chr10:15457357..15459952 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010388 vs. ExPASy TrEMBL
Match: U5GTA6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s16291g PE=3 SV=1)

HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0
Identity = 374/552 (67.75%), Postives = 438/552 (79.35%), Query Frame = 1
Query:   94 VDEAEERAFKRKTRRRXXXXXXXXXXXXXXXXXXXXGTLIHKRNNSSPDTASPT-ELTPAASLKAVCEVTQYPXXXXXXXXXXXXXNATDPEILFKLSLKVVIDELSGLSQYPKKLQAETNNTQVKHALDVCGTVFDDALDRLNDSATSLEVGDGESLLSDSKIDDLKTWLSTVITDQETCLDALEELNTTKNFNATLFEELKAAMQNSSEYASNSLAIAAKILGLLTNFRIPIHRRLLGFQKAAPSEFPAWVSPTERRLLQESKPTPNVIVAKDGSGHFRTINEAVQLVGKKNQSRFVIYVKEGKYVENVNLDKHRWNVMIYGDGKTKTIISGSRNXXXXXXXXXXXXXXXXXRGFIAKDIKFENTAGAAKHQAVAMRSGSDRSVFYSCAFDAYQDTLYAHSNRQFYRECDILGTID---------------FIFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTITPFGNLTANTYLGRPWKEFSTTVIMQSNIGAFLNPVGWREWVTNVDPPSTILYAEYQNTGPGSTVDQRVK 1701
            VDE E++AF+RKTR+RLII+V+S IVLLAVIIGAV G ++H RNN+S     P  ELTPAASLKAVC VT+YP+SCFSSIS++ + N TDPE LFKLSL V ++ELS L  YP KL    ++  ++ AL VC TVFDDA+DRLNDS +S+ VG+G  +LS +K+DDLKTW+ST ITDQETCLDAL+ELN TK+FN TL + +KA M+NS+E+ SNSLAI AKILGLL++F IPIHRRLLGF++   S FP WV   +RRLLQ S P P+V VAKD SG   T+ EAV  + KK++SRF+IYVKEG+Y+ENV LDK +WNVMIYGDGK KTIISGS NFVDGT TF TA+F VAG+ F A+DIKF NTAGA KHQAVA RSGSD SV + CAFD +QDTLYAHSNRQFYR+CDI GTID               F+FGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQ C  +  GN+TA TYLGRPWK++ST VIMQS+IG FL P GW  WV+ VDPP+TI YAEYQNTGPG+ VD RVK
Sbjct:    5 VDEVEQQAFRRKTRKRLIIVVVSSIVLLAVIIGAVIGVVLHNRNNNSSSNPVPPPELTPAASLKAVCSVTRYPTSCFSSISALETGNTTDPEELFKLSLHVAMNELSKLKDYPDKLIQSIDDATLQDALKVCATVFDDAVDRLNDSISSMAVGEGGKILSTAKMDDLKTWISTTITDQETCLDALQELNVTKHFNQTLVDHVKAEMENSTEFVSNSLAIVAKILGLLSDFNIPIHRRLLGFERTHNSRFPHWVGLGDRRLLQMSTPKPDVTVAKDDSGDCTTLREAVGKIPKKSKSRFIIYVKEGEYLENVILDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTASFAVAGKSFFARDIKFINTAGAEKHQAVAFRSGSDMSVLFRCAFDGFQDTLYAHSNRQFYRDCDITGTIDLSMFGSLPQPRSQTCFMFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQNCKFSASGNVTAPTYLGRPWKDYSTAVIMQSDIGPFLRPSGWMSWVSGVDPPATIFYAEYQNTGPGARVDGRVK 556          
BLAST of g.arboreum_cottongen_reftransV1_0010388 vs. ExPASy TrEMBL
Match: A0A078F517_BRANA (Pectinesterase OS=Brassica napus GN=BnaA05g14120D PE=3 SV=1)

HSP 1 Score: 676.011 bits (1743), Expect = 0.000e+0
Identity = 359/592 (60.64%), Postives = 456/592 (77.03%), Query Frame = 1
Query:   58 MDSIKSFKGYGKVDEAEERAFKRKTRRRXXXXXXXXXXXXXXXXXXXXGTLIHKRNNSS--PDTASPTELTPAASLKAVCEVTQYPXXXXXXXXXXXXXNATDPEILFKLSLKVVIDELSGLSQYPKKLQAETNNTQVKHALDVCGTVFDDALDRLNDSATSLEVGDGES--LLSDSKIDDLKTWLSTVITDQETCLDALEEL--NTTKNFNATLFEELKAAMQNSSEYASNSLAIAAKILGLLTNFRIPIH--RRLLGFQKAAPSEFPAWVSPTERRLLQESKPTPNVIVAKDGSGHFRTINEAVQLVGKKNQSRFVIYVKEGKYVENVNLDKHRWNVMIYGDGKTKTIISGSRNXXXXXXXXXXXXXXXXXRGFIAKDIKFENTAGAAKHQAVAMRSGSDRSVFYSCAFDAYQDTLYAHSNRQFYRECDILGTIDFIFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTITPFGNLTANTYLGRPWKEFSTTVIMQSNIGAFLNPVGWREWVTNVDPPSTILYAEYQNTGPGSTVDQRVKWAGYRSTLSEADAGKFTVANFIQGEDWLPAATVAYE 1809
            MDS+ SFKGYGKVDEA++ A K+KTR+RLI+L +S ++L+AVIIGAV GT++H +N +S  P  +SP ELTP+ SLK +C VT+YP SCF+SIS + SSN TDPE+LFKLSLKV+IDEL G+S  P+KL  ET + ++K AL VCG + +DALDRLND+ +S++  +  S   L+ S+I+DLKTWLS  +TD ETC DA++EL  N T+  N+T+ ++LK+AM +S+E+ASNSLAI +KIL  +++F IPIH  RRLL  Q+      P W     RRLLQ     P+V VA DGSG   T+NEAV +V KK+   FVIYVK G+YVENV +DK +WNVMIYGDGK KTII+G +NF+DGT T++TATF + G+GFI KDI   NT+GAAKHQAVA RSGSD SV+Y C+FD +QDTLY HSNRQFYR CD+ GTIDFIFG+AAVVFQ+C I PRQPL NQFNTITAQGKKDPNQN+G+SIQ+CTI+  GN+TA TYLGRPWK+FSTTVIM++ IG  +   GW  WV  VDPP++I+Y EY+NTGPGS V  RVKWAGY++ ++  +A KFTVA  + G DW+PA  V ++
Sbjct:    1 MDSVTSFKGYGKVDEAQDLALKKKTRKRLILLTVSGVILVAVIIGAVVGTVVHNKNKNSTEPTPSSPPELTPSTSLKTICSVTRYPESCFNSISKLPSSNTTDPEVLFKLSLKVIIDELDGISDLPEKLSTETEDERIKSALRVCGNLIEDALDRLNDTVSSMDASEDGSKKTLNSSRINDLKTWLSATVTDHETCFDAIDELATNNTEYANSTITKQLKSAMSSSTEFASNSLAIVSKILAAISDFGIPIHGRRRLLMSQQP-----PEWA---RRRLLQTEGLKPDVTVAADGSGDVTTVNEAVAMVPKKSLKMFVIYVKAGRYVENVVMDKGKWNVMIYGDGKDKTIIAGGKNFIDGTPTYETATFAIQGKGFIMKDIAIINTSGAAKHQAVAFRSGSDFSVYYQCSFDGFQDTLYPHSNRQFYRNCDVTGTIDFIFGSAAVVFQDCKIMPRQPLGNQFNTITAQGKKDPNQNSGMSIQRCTISANGNVTAPTYLGRPWKDFSTTVIMETEIGPVVKATGWMSWVNGVDPPASIVYGEYKNTGPGSDVAMRVKWAGYKAVMTADEAAKFTVATLLHGGDWIPATGVTHQ 584          
BLAST of g.arboreum_cottongen_reftransV1_0010388 vs. ExPASy TrEMBL
Match: R0GVN4_9BRAS (Pectinesterase OS=Capsella rubella GN=CARUB_v10008670mg PE=3 SV=1)

HSP 1 Score: 670.233 bits (1728), Expect = 0.000e+0
Identity = 356/589 (60.44%), Postives = 451/589 (76.57%), Query Frame = 1
Query:   58 MDSIKSFKGYGKVDEAEERAFKRKTRRRXXXXXXXXXXXXXXXXXXXXGTLIHKRNNSSPDTASPTELTPAASLKAVCEVTQYPXXXXXXXXXXXXXNATDPEILFKLSLKVVIDELSGLSQYPKKLQAETNNTQVKHALDVCGTVFDDALDRLNDSATSLEVGDGESLLSDSKIDDLKTWLSTVITDQETCLDALEEL--NTTKNFNATLFEELKAAMQNSSEYASNSLAIAAKILGLLTNFRIPIHRR--LLGFQKAAPSE-FPAWVSPTERRLLQESKPTPNVIVAKDGSGHFRTINEAVQLVGKKNQSRFVIYVKEGKYVENVNLDKHRWNVMIYGDGKTKTIISGSRNXXXXXXXXXXXXXXXXXRGFIAKDIKFENTAGAAKHQAVAMRSGSDRSVFYSCAFDAYQDTLYAHSNRQFYRECDILGTIDFIFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTITPFGNLTANTYLGRPWKEFSTTVIMQSNIGAFLNPVGWREWVTNVDPPSTILYAEYQNTGPGSTVDQRVKWAGYRSTLSEADAGKFTVANFIQGEDWLPAATVAYE 1809
            MDS+ SFKGYGKVDEA++ A K+KTR+R+++L IS++VL+AVII AV  T++H +N+ S    SP ELTP+ SLK +C VT++P SC SSIS + SSN TDPE LFKLSL+V+IDEL  +S  P+KL  ET + ++K AL VCG + +DALDRLND+ ++++  + ++L S SKI+DLKTWLS  +TD +TC D+L+EL  N T+  N+T+   LK+AM NS+E+ SNSLAI +KIL  L++  IPIHRR  L+       SE F  W     RRLLQ     P+V VA DG+G  +T+NEAV +V KK+   FVIYVK G Y ENV +DK +WNVMIYGDGK KTIISGS+NF+DGT T++TATF + G+GF+ KDI   NT+GA KHQAVA RSGSD SV+Y C+FD +QDTLY HSNRQFYR+CD+ GTIDFIFG+AAVVFQ C I PRQPLPNQFNTITAQGKKDPNQN+G+SIQ+CTI+  GN+ A TYLGRPWKEFSTTVIM++ IG  + P+GW  WV+ VDPP++I+Y EY+NTGPGS V QRVKWAGY+S +S+ DA KFTVA  + G DW+PA  V ++
Sbjct:    1 MDSVNSFKGYGKVDEAQDLALKKKTRKRILLLTISVVVLVAVIIAAVIATVVHNKNDESA-PGSPHELTPSTSLKTICSVTRFPESCISSISKLPSSNTTDPETLFKLSLRVIIDELDSISDLPEKLSKETEDERIKSALRVCGDLIEDALDRLNDTVSAIDDTEKKTL-SSSKIEDLKTWLSATVTDHDTCFDSLDELKQNKTEYANSTIIHNLKSAMGNSTEFTSNSLAIVSKILAALSDLGIPIHRRRRLMSHHHQQQSEDFEEWA---RRRLLQTEGAKPDVTVAADGTGDVKTVNEAVLMVPKKSLKMFVIYVKSGTYNENVVMDKSKWNVMIYGDGKGKTIISGSKNFIDGTPTYETATFAIQGKGFVMKDIGIINTSGATKHQAVAFRSGSDFSVYYQCSFDGFQDTLYPHSNRQFYRDCDVTGTIDFIFGSAAVVFQGCKIMPRQPLPNQFNTITAQGKKDPNQNSGMSIQRCTISANGNVIAPTYLGRPWKEFSTTVIMETEIGPVVRPIGWMSWVSGVDPPASIVYGEYKNTGPGSDVTQRVKWAGYKSVMSDEDAAKFTVATLLHGSDWIPATGVTHQ 584          
BLAST of g.arboreum_cottongen_reftransV1_0010388 vs. ExPASy TrEMBL
Match: Q0WWC7_ARATH (Pectinesterase OS=Arabidopsis thaliana GN=At1g53840 PE=2 SV=1)

HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0
Identity = 361/586 (61.60%), Postives = 450/586 (76.79%), Query Frame = 1
Query:   58 MDSIKSFKGYGKVDEAEERAFKRKTRRRXXXXXXXXXXXXXXXXXXXXGTLIHK-RNNSSPDTASPTELTPAASLKAVCEVTQYPXXXXXXXXXXXXXNATDPEILFKLSLKVVIDELSGLSQYPKKLQAETNNTQVKHALDVCGTVFDDALDRLNDSATSLEVGDGESLLSDSKIDDLKTWLSTVITDQETCLDALEEL--NTTKNFNATLFEELKAAMQNSSEYASNSLAIAAKILGLLTNFRIPIHRR--LLGFQKAAPSEFPAWVSPTERRLLQESKPTPNVIVAKDGSGHFRTINEAVQLVGKKNQSRFVIYVKEGKYVENVNLDKHRWNVMIYGDGKTKTIISGSRNXXXXXXXXXXXXXXXXXRGFIAKDIKFENTAGAAKHQAVAMRSGSDRSVFYSCAFDAYQDTLYAHSNRQFYRECDILGTIDFIFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTITPFGNLTANTYLGRPWKEFSTTVIMQSNIGAFLNPVGWREWVTNVDPPSTILYAEYQNTGPGSTVDQRVKWAGYRSTLSEADAGKFTVANFIQGEDWLPAATV 1800
            MDS+ SFKGYGKVDEA++ A K+KTR+RL++L IS++VL+AVII AV  T++HK +N S+P  + P ELTP+ SLKA+C VT++P SC SSIS + SSN TDPE LFKLSLKV+IDEL  +S  P+KL  ET + ++K AL VCG + +DALDRLND+ ++++  + +  LS SKI+DLKTWLS  +TD ETC D+L+EL  N T+  N+T+ + LK+AM  S+E+ SNSLAI +KIL  L++  IPIHRR  L+        +F  W     RRLLQ +   P+V VA DG+G   T+NEAV  V KK+   FVIYVK G YVENV +DK +WNVMIYGDGK KTIISGS+NFVDGT T++TATF + G+GFI KDI   NTAGAAKHQAVA RSGSD SV+Y C+FD +QDTLY HSNRQFYR+CD+ GTIDFIFG+AAVVFQ C I PRQPL NQFNTITAQGKKDPNQ++G+SIQ+CTI+  GN+ A TYLGRPWKEFSTTVIM++ IGA + P GW  WV+ VDPP++I+Y EY+NTGPGS V QRVKWAGY+  +S+A+A KFTVA  + G DW+PA  V
Sbjct:    1 MDSVNSFKGYGKVDEAQDLALKKKTRKRLLLLSISVVVLIAVIIAAVVATVVHKNKNESTP--SPPPELTPSTSLKAICSVTRFPESCISSISKLPSSNTTDPETLFKLSLKVIIDELDSISDLPEKLSKETEDERIKSALRVCGDLIEDALDRLNDTVSAIDDEEKKKTLSSSKIEDLKTWLSATVTDHETCFDSLDELKQNKTEYANSTITQNLKSAMSRSTEFTSNSLAIVSKILSALSDLGIPIHRRRRLMSHHHQQSVDFEKWA---RRRLLQTAGLKPDVTVAGDGTGDVLTVNEAVAKVPKKSLKMFVIYVKSGTYVENVVMDKSKWNVMIYGDGKGKTIISGSKNFVDGTPTYETATFAIQGKGFIMKDIGIINTAGAAKHQAVAFRSGSDFSVYYQCSFDGFQDTLYPHSNRQFYRDCDVTGTIDFIFGSAAVVFQGCKIMPRQPLSNQFNTITAQGKKDPNQSSGMSIQRCTISANGNVIAPTYLGRPWKEFSTTVIMETVIGAVVRPSGWMSWVSGVDPPASIVYGEYKNTGPGSDVTQRVKWAGYKPVMSDAEAAKFTVATLLHGADWIPATGV 581          
BLAST of g.arboreum_cottongen_reftransV1_0010388 vs. ExPASy TrEMBL
Match: Q8LA06_ARATH (Pectinesterase OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 669.463 bits (1726), Expect = 0.000e+0
Identity = 361/586 (61.60%), Postives = 450/586 (76.79%), Query Frame = 1
Query:   58 MDSIKSFKGYGKVDEAEERAFKRKTRRRXXXXXXXXXXXXXXXXXXXXGTLIHK-RNNSSPDTASPTELTPAASLKAVCEVTQYPXXXXXXXXXXXXXNATDPEILFKLSLKVVIDELSGLSQYPKKLQAETNNTQVKHALDVCGTVFDDALDRLNDSATSLEVGDGESLLSDSKIDDLKTWLSTVITDQETCLDALEEL--NTTKNFNATLFEELKAAMQNSSEYASNSLAIAAKILGLLTNFRIPIHRR--LLGFQKAAPSEFPAWVSPTERRLLQESKPTPNVIVAKDGSGHFRTINEAVQLVGKKNQSRFVIYVKEGKYVENVNLDKHRWNVMIYGDGKTKTIISGSRNXXXXXXXXXXXXXXXXXRGFIAKDIKFENTAGAAKHQAVAMRSGSDRSVFYSCAFDAYQDTLYAHSNRQFYRECDILGTIDFIFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTITPFGNLTANTYLGRPWKEFSTTVIMQSNIGAFLNPVGWREWVTNVDPPSTILYAEYQNTGPGSTVDQRVKWAGYRSTLSEADAGKFTVANFIQGEDWLPAATV 1800
            MDS+ SFKGYGKVDEA++ A K+KTR+RL++L IS++VL+AVII AV  T++HK +N S+P  + P ELTP+ SLKA+C VT++P SC SSIS + SSN TDPE LFKLSLKV+IDEL  +S  P+KL  ET + ++K AL VCG + +DALDRLND+ ++++  + +  LS SKI+DLKTWLS  +TD ETC D+L+EL  N T+  N+T+ + LK+AM  S+E+ SNSLAI +KIL  L++  IPIHRR  L+        +F  W     RRLLQ +   P+V VA DG+G   T+NEAV  V KK+   FVIYVK G YVENV +DK +WNVMIYGDGK KTIISGS+NFVDGT T++TATF + G+GFI KDI   NTAGAAKHQAVA RSGSD SV+Y C+FD +QDTLY HSNRQFYR+CD+ GTIDFIFG+AAVVFQ C I PRQPL NQFNTITAQGKKDPNQ++G+SIQ+CTI+  GN+ A TYLGRPWKEFSTTVIM++ IGA + P GW  WV+ VDPP++I+Y EY+NTGPGS V QRVKWAGY+  +S+A+A KFTVA  + G DW+PA  V
Sbjct:    1 MDSVNSFKGYGKVDEAQDLALKKKTRKRLLLLSISVVVLIAVIIAAVVATVVHKNKNESTP--SPPPELTPSTSLKAICSVTRFPESCISSISKLPSSNTTDPETLFKLSLKVIIDELDSISDLPEKLSKETEDERIKSALRVCGDLIEDALDRLNDTVSAIDDEEKKKTLSSSKIEDLKTWLSATVTDHETCFDSLDELKQNKTEYANSTITQNLKSAMSRSTEFTSNSLAIVSKILSALSDLGIPIHRRRRLMSHHHQQSVDFEKWA---RRRLLQTAGLKPDVTVAGDGTGDVLTVNEAVAKVPKKSLKMFVIYVKSGTYVENVVMDKSKWNVMIYGDGKGKTIISGSKNFVDGTPTYETATFAIQGKGFIMKDIGIINTAGAAKHQAVAFRSGSDFSVYYQCSFDGFQDTLYPHSNRQFYRDCDVTGTIDFIFGSAAVVFQGCKIMPRQPLSNQFNTITAQGKKDPNQSSGMSIQRCTISTNGNVIAPTYLGRPWKEFSTTVIMETVIGAVVRPSGWMSWVSGVDPPASIVYGEYKNTGPGSDVTQRVKWAGYKPVMSDAEAAKFTVATLLHGADWIPATGV 581          
BLAST of g.arboreum_cottongen_reftransV1_0010388 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 353.984 bits (907), Expect = 3.653e-111
Identity = 224/548 (40.88%), Postives = 307/548 (56.02%), Query Frame = 1
Query:  259 LTPA--ASLKAVCEVTQYPXXXXXXXXXXXXXNATDPEILFKLSLKVVIDELSGLSQYPKKLQAETNNT--QVKHALDVCGTVFDDALDRLNDSATSLEVGDGESLLSDSKIDDLKTWLSTVITDQETCLDALEELNTTKNFNATLFEELKAAMQNSSEYASNSLAIAAKILGL-LTNF----RIPIHRRLL--------------GFQKAAPSEFPAWVSPTERRLLQESKPTPNVIVAKDGSGHFRTINEAVQLVGKKNQSRFVIYVKEGKYVENVNLDKHRWNVMIYGDGKTKTIISGSRNXXXXXXXXXXXXXXXXXRGFIAKDIKFENTAGAAKHQAVAMRSGSDRSVFYSCAFDAYQDTLYAHSNRQFYRECDILGTIDFIFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTITPFGNLTA-----NTYLGRPWKEFSTTVIMQSNIGAFLNPVGWREWVTNVDPPSTILYAEYQNTGPGSTVDQRVKWAGYRSTLSEADAGKFTVANFIQGEDWLPAATVAYEPAL 1818
            L+P+  A L++ C  T+YP  C S++ +      T  + + + S+ + I  +       KKL  +      + K AL  C    D+ LD L+++   L +   +  L +    DLKT +S+ IT+QETCLD     +  K     L   LK  + +     SN+LA+   +    + NF    +I  + R L              G  +     +P W+S  +RRLLQ S    +  VA DGSG F+T+  AV    + +  R+VI++K G Y ENV + K + N+M  GDG+T+TII+GSRN VDG+ TF +AT    G  F+A+DI F+NTAG +KHQAVA+R GSD S FY+C   AYQDTLY HSNRQF+ +C I GT+DFIFGNAAVV Q+C+I  R+P   Q N +TAQG+ DPNQNTGI IQKC I    +L +      TYLGRPWKE+S TVIMQS I   + P GW EW T     +T+ Y EY NTG G+    RVKW G++   + A+A K+T   FI G  WL +    +   L
Sbjct:   51 LSPSSHAVLRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTKKTLRE-HAGDLKTLISSAITNQETCLDGFSHDDADKQVRKAL---LKGQI-HVEHMCSNALAMIKNMTDTDIANFEQKAKITSNNRKLKEENQETTVAVDIAGAGELDSEGWPTWLSAGDRRLLQGSGVKADATVAADGSGTFKTVAAAVAAAPENSNKRYVIHIKAGVYRENVEVAKKKKNIMFMGDGRTRTIITGSRNVVDGSTTFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYNCDMLAYQDTLYVHSNRQFFVKCLIAGTVDFIFGNAAVVLQDCDIHARRPNSGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLQSVKGSFPTYLGRPWKEYSQTVIMQSAISDVIRPEGWSEW-TGTFALNTLTYREYSNTGAGAGTANRVKWRGFKVITAAAEAQKYTAGQFIGGGGWLSSTGFPFSLGL 592          
BLAST of g.arboreum_cottongen_reftransV1_0010388 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 5.029e-111
Identity = 202/469 (43.07%), Postives = 278/469 (59.28%), Query Frame = 1
Query:  433 KLQAETNNTQVKHALDVCGTVFDDALDRLNDSATSLEVGDGESLLSDSKIDDLKTWLSTVITDQETCLDALEELNTTKNFNATLFEELKAAMQNSSEYASNSLAIAAKILGLLTNFRIPIHRRLLGFQKAAPSEFPAWVSPTERRLLQESKPT--PNVIVAKDGSGHFRTINEAVQLVGKKNQSRFVIYVKEGKYVENVNLDKHRWNVMIYGDGKTKTIISGSRNXXXXXXXXXXXXXXXXXRGFIAKDIKFENTAGAAKHQAVAMRSGSDRSVFYSCAFDAYQDTLYAHSNRQFYRECDILGTIDFIFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTITPFGNLTA-----NTYLGRPWKEFSTTVIMQSNIGAFLNPVGWREWVTNVDPPSTILYAEYQNTGPGSTVDQRVKWAGYRSTLSEADAGKFTVANFIQGEDWLPAATVAYEPAL 1818
            K++ + N+ + + AL  C  + D ++D ++DS  +++        + S+  + ++WLS V+T+  TCLD L+   T    N T  +EL +  +           +A  +L  +T     + R  LG       + P+WVS  +R+L++ S      N +VAKDG+G +RT+ EAV     K+++R+VIYVK G Y ENV +   +  +MI GDG   TII+G+ N VDG+ TF +AT    G+GFI +DI  +NTAG AKHQAVA+R G+D+SV   C  DAYQDTLYAHS RQFYR+  + GTIDFIFGNAAVVFQ C +  R+P   Q N +TAQG+ DPNQ TG SIQ C I    +L        TYLGRPWK++S TV+M+S +G  +NP GW EW  +     T+ Y E+ N GPG+   +RVKW GY      A+A  FTVA  IQG  WL +  VAY   L
Sbjct:  106 KMKNQINDIRQEGALTDCLELLDQSVDLVSDSIAAIDK------RTHSEHANAQSWLSGVLTNHVTCLDELDSF-TKAMINGTNLDELISRAK-----------VALAMLASVTTPNDDVLRPGLG-------KMPSWVSSRDRKLMESSGKDIGANAVVAKDGTGKYRTLAEAVAAAPDKSKTRYVIYVKRGIYKENVEVSSRKMKLMIVGDGMHATIITGNLNVVDGSTTFHSATLAAVGKGFILQDICIQNTAGPAKHQAVALRVGADKSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCKLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKKYSRTVVMESYLGGLINPAGWAEWDGDF-ALKTLYYGEFMNNGPGAGTSKRVKWPGYHCITDPAEAMPFTVAKLIQGGSWLRSTGVAYVDGL 548          
BLAST of g.arboreum_cottongen_reftransV1_0010388 vs. ExPASy Swiss-Prot
Match: PME45_ARATH (Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.235e-110
Identity = 208/491 (42.36%), Postives = 289/491 (58.86%), Query Frame = 1
Query:  355 TDPEILFKLSLKVVIDELSGLSQYPKKLQAETNNTQVKHALDVCGTVFDDALDRLNDSATSLEVGDGESLLSDSKIDDLKTWLSTVITDQETCLDALEELNTTKNFNATLFEELKAAMQNSSEYASNSLAIAAKILGLLTNFRIP-IHRRLLGFQKAAPSE---FPAWVSPTERRLLQE---SKPTPNVIVAKDGSGHFRTINEAVQLVGKKNQSRFVIYVKEGKYVENVNLDKHRWNVMIYGDGKTKTIISGSRNXXXXXXXXXXXXXXXXXRGFIAKDIKFENTAGAAKHQAVAMRSGSDRSVFYSCAFDAYQDTLYAHSNRQFYRECDILGTIDFIFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTITPFGNLTA-----NTYLGRPWKEFSTTVIMQSNIGAFLNPVGWREWVTNVDPPSTILYAEYQNTGPGSTVDQRVKWAGYRSTLSEADAGKFTVANFIQGEDWLPA 1791
            TDP  L K ++  V D+L  +  + + L  +T N   K A+  C  + D+A + L  S     + D E       + DL +WLS V++ QETC+D  EE          L  E++    +S    SNSLA+   + G L++  +P +  RLL   +++  E     +W+S  ERR+L+        PN  VAKDGSG+F TIN A++ +  K Q R+ IY+K G Y E+V +DK + NV + GDG  KTI++G+++      TF TATF   G GF+A+ + F NTAG   HQAVA+R  SDRSVF +C F+ YQDTLYA+++RQ+YR C I+GT+DFIFG+AA +FQNC+I  R+ LP Q NT+TAQG+ D  Q TG  I  CT+ P  +L        +YLGRPWK  S TV+M+S I   ++PVGW  W        T+ YAEY+N GP      RVKW G+R  L++ +A KFTV  F+QGE W+ A
Sbjct:  123 TDPRSLLKSAIVAVNDDLDQV--FKRVLSLKTENKDDKDAIAQCKLLVDEAKEELGTSMK--RINDSEVNNFAKIVPDLDSWLSAVMSYQETCVDGFEE--------GKLKTEIRKNFNSSQVLTSNSLAMIKSLDGYLSS--VPKVKTRLLLEARSSAKETDHITSWLSNKERRMLKAVDVKALKPNATVAKDGSGNFTTINAALKAMPAKYQGRYTIYIKHGIYDESVIIDKKKPNVTMVGDGSQKTIVTGNKSHAKKIRTFLTATFVAQGEGFMAQSMGFRNTAGPEGHQAVAIRVQSDRSVFLNCRFEGYQDTLYAYTHRQYYRSCVIIGTVDFIFGDAAAIFQNCDIFIRKGLPGQKNTVTAQGRVDKFQTTGFVIHNCTVAPNEDLKPVKAQFKSYLGRPWKPHSRTVVMESTIEDVIDPVGWLRWQETDFAIDTLSYAEYKNDGPSGATAARVKWPGFR-VLNKEEAMKFTVGPFLQGE-WIQA 597          
BLAST of g.arboreum_cottongen_reftransV1_0010388 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=3)

HSP 1 Score: 350.132 bits (897), Expect = 3.503e-110
Identity = 204/492 (41.46%), Postives = 289/492 (58.74%), Query Frame = 1
Query:  370 LFKLSLKVVIDELSGLSQYPKKLQAETNNTQVKHALDVCGTVFDDALDRLNDSATSLEVGDGESLLSDSKIDDLKTWLSTVITDQETCLDALEELNTTKNFNATLFEELKAAMQNSSEYASNSLAIAAKILGLLTNFRIPIHRRLLGFQKAAPSEFPAWVSPTERRLLQES----KPTPNVIVAKDGSGHFRTINEAVQLVGKKNQSRFVIYVKEGKYVENVNLDKHRWNVMIYGDGKTKTIISGSRNXXXXXXXXXXXXXXXXXRGFIAKDIKFENTAGAAKHQAVAMRSGSDRSVFYSCAFDAYQDTLYAHSNRQFYRECDILGTIDFIFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTITPFGNL-----TANTYLGRPWKEFSTTVIMQSNIGAFLNPVGWREWVTNVDPPSTILYAEYQNTGPGSTVDQRVKWAGYRSTLSEADAGKFTVANFIQGEDWLPAATVAYEPAL 1818
            L  + LK  +  L        + +  +N  + K     C  + D + DR+  S   L  G   +L S S +    TWLS+V+T+  TCL+++ +++          + +K  +++    A  +LAI   +L    + ++ I  R           FP+W++  +R+LL+ S    K T NV+VAKDG+G F+T+NEAV    + + +R+VIYVK+G Y E +++ K + N+M+ GDGK  TII+GS N +DG+ TF +AT    G GF+A+DI F+NTAG AKHQAVA+R  +D++V   C  DAYQDTLY H+ RQFYR+  I GT+DFIFGN+AVVFQNC+I  R P   Q N +TAQG++D NQNT ISIQKC IT   +L     +  T+LGRPWK +S TVIMQS I   ++P GW  W       ST+ Y EY NTGPG+   +RV W G++      +A +FTVA  IQG  WL    V ++  L
Sbjct:   88 LLHVFLKNSVWRLESTMTMVSEARIRSNGVRDKAGFADCEEMMDVSKDRMMSSMEELR-GGNYNLESYSNV---HTWLSSVLTNYMTCLESISDVSVNSK------QIVKPQLEDLVSRARVALAIFVSVLPARDDLKMIISNR-----------FPSWLTALDRKLLESSPKTLKVTANVVVAKDGTGKFKTVNEAVAAAPENSNTRYVIYVKKGVYKETIDIGKKKKNLMLVGDGKDATIITGSLNVIDGSTTFRSATVAANGDGFMAQDIWFQNTAGPAKHQAVALRVSADQTVINRCRIDAYQDTLYTHTLRQFYRDSYITGTVDFIFGNSAVVFQNCDIVARNPGAGQKNMLTAQGREDQNQNTAISIQKCKITASSDLAPVKGSVKTFLGRPWKLYSRTVIMQSFIDNHIDPAGWFPWDGEF-ALSTLYYGEYANTGPGADTSKRVNWKGFKVIKDSKEAEQFTVAKLIQGGLWLKPTGVTFQEWL 557          
BLAST of g.arboreum_cottongen_reftransV1_0010388 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 350.132 bits (897), Expect = 5.315e-110
Identity = 217/503 (43.14%), Postives = 290/503 (57.65%), Query Frame = 1
Query:  415 LSQYPKKLQAETNNTQVKHALDVCGTVFDDALDRLNDSATSLEVGDGESLLSDSKIDDLKTWLSTVITDQETCLDALEELNTTKNFNATLFEELKAAMQNSSEYASNSLAIAAKILGLLTNFRIPI-----------HRRLLGFQKAAPSEFP---------AWVSPTERRLLQESKPTPNVIVA------KDGSGHFRTINEAVQLVGKKNQSR---FVIYVKEGKYVENVNLDKHRWNVMIYGDGKTKTIISGSRNXXXXXXXXXXXXXXXXXRGFIAKDIKFENTAGAAKHQAVAMRSGSDRSVFYSCAFDAYQDTLYAHSNRQFYRECDILGTIDFIFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQKCTITPF-----GNLTANTYLGRPWKEFSTTVIMQSNIGAFLNPVGWREWVTNVD-PPSTILYAEYQNTGPGSTVDQRVKWAGYRSTLSEADAGKFTVANFIQGEDWLPAATVAYEPAL 1818
            + +Y K+  A  + + V  AL  C  +     D L  S  ++ +      LS SK D+++T LS  +T+++TCLD +   NT  + + T+   +   + N ++  S SLA+  K  G +   +  +           H     F+       P          + S + R+L  +      V+V+      ++G+G+F TI EAV     K       FVIYV  G Y ENV + K++  +M+ GDG  +T+++G+RN VDG  TF++ATF V    F+A ++ F NTAG  KHQAVAMRS +D S+FYSC+F+AYQDTLY HS RQFYRECDI GT+DFIFGNAAVVFQ+CN+ PRQP+ NQFN ITAQG+ DPNQNTGISI  CTI P       N T  TYLGRPWKE+S TV MQS I   + PVGWREW  N D   ST+ YAEY NTG GS+   RV W GY   ++  DA  FTV NF+ G+ W+  + V Y   L
Sbjct:   78 IDRYLKRNNALLSQSAVG-ALQDCRYLASLTTDYLITSFETVNITTSSKTLSFSKADEIQTLLSAALTNEQTCLDGI---NTAASSSWTIRNGVALPLINDTKLFSVSLALFTK--GWVPKKKKQVASYSWAHPKNTHSHTKPFRHFRNGALPLKMTEHTRAVYESLSRRKLADDDNDVNTVLVSDIVTVNQNGTGNFTTITEAVNSAPNKTDGTAGYFVIYVTSGVYEENVVIAKNKRYLMMIGDGINRTVVTGNRNVVDGWTTFNSATFAVTSPNFVAVNMTFRNTAGPEKHQAVAMRSSADLSIFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQDCNLYPRQPMQNQFNAITAQGRTDPNQNTGISIHNCTIKPADDLVSSNYTVKTYLGRPWKEYSRTVFMQSYIDEVVEPVGWREW--NGDFALSTLYYAEYNNTGSGSSTTDRVVWPGYH-VINSTDANNFTVENFLLGDGWMVQSGVPYISGL 571          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010388 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
U5GTA6_POPTR0.000e+067.75Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A078F517_BRANA0.000e+060.64Pectinesterase OS=Brassica napus GN=BnaA05g14120D ... [more]
R0GVN4_9BRAS0.000e+060.44Pectinesterase OS=Capsella rubella GN=CARUB_v10008... [more]
Q0WWC7_ARATH0.000e+061.60Pectinesterase OS=Arabidopsis thaliana GN=At1g5384... [more]
Q8LA06_ARATH0.000e+061.60Pectinesterase OS=Arabidopsis thaliana PE=2 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0010388 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PME3_ARATH3.653e-11140.88Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME22_SOLLC5.029e-11143.07Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME45_ARATH1.235e-11042.36Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME18_ARATH3.503e-11041.46Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME41_ARATH5.315e-11043.14Probable pectinesterase/pectinesterase inhibitor 4... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006501Pectinesterase inhibitor domainSMARTSM00856PMEI_2coord: 69..230
e-value: 1.5E-32
score: 124.1
IPR006501Pectinesterase inhibitor domainTIGRFAMTIGR01614TIGR01614coord: 62..232
e-value: 2.9E-24
score: 83.3
IPR006501Pectinesterase inhibitor domainGENE3D1.20.140.40coord: 73..234
e-value: 5.0E-33
score: 113.7
IPR006501Pectinesterase inhibitor domainPFAMPF04043PMEIcoord: 73..230
e-value: 1.3E-25
score: 90.4
IPR006501Pectinesterase inhibitor domainSUPERFAMILY101148Plant invertase/pectin methylesterase inhibitorcoord: 74..234
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 275..585
e-value: 1.4E-116
score: 388.6
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 280..573
e-value: 9.8E-138
score: 457.7
NoneNo IPR availablePANTHERPTHR31707FAMILY NOT NAMEDcoord: 26..587
NoneNo IPR availablePANTHERPTHR31707:SF42PECTINESTERASE 1-RELATEDcoord: 26..587
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..52
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 53..587
NoneNo IPR availableTMHMMTMhelixcoord: 29..51
IPR018040Pectinesterase, Tyr active sitePROSITEPS00800PECTINESTERASE_1coord: 305..324
IPR033131Pectinesterase, Asp active sitePROSITEPS00503PECTINESTERASE_2coord: 424..433
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 277..583

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010388 ID=g.arboreum_cottongen_reftransV1_0010388; Name=g.arboreum_cottongen_reftransV1_0010388; organism=Gossypium arboreum; type=contig; length=1961bp
TAATATTTTAACAAAGAAGCATCGAAGAGAGGTCCTATCTTTTCATCTCG
TTGAGCAATGGATTCAATCAAGTCTTTCAAGGGCTATGGCAAAGTAGACG
AGGCTGAAGAACGAGCTTTCAAGCGAAAGACACGAAGGCGTCTCATTATC
CTCGTCATCTCCATTATCGTGCTGTTAGCTGTTATCATTGGCGCAGTTGC
GGGGACTTTGATACACAAGAGAAACAACTCGTCTCCCGATACTGCATCCC
CAACCGAGTTAACTCCAGCAGCTTCATTGAAGGCGGTTTGCGAAGTGACT
CAGTACCCATCTTCCTGCTTCTCCAGCATATCATCTGTCGCATCGTCGAA
CGCAACTGACCCAGAGATCCTCTTCAAGCTGTCTTTGAAAGTAGTTATCG
ACGAGCTCTCTGGGTTGTCACAGTATCCCAAGAAGTTACAAGCTGAAACC
AATAACACCCAAGTGAAACACGCTCTAGATGTATGTGGAACCGTGTTTGA
TGACGCGTTGGATCGACTGAATGACTCGGCAACTTCCCTCGAAGTTGGGG
ACGGAGAGAGTTTGTTGTCGGATTCCAAGATCGATGACTTGAAGACATGG
TTAAGCACAGTCATAACCGATCAAGAAACATGTTTAGACGCCCTGGAGGA
ACTGAACACCACAAAGAACTTCAACGCCACACTGTTCGAAGAACTGAAAG
CCGCCATGCAGAACTCAAGTGAGTATGCCAGCAACAGTTTGGCCATCGCT
GCTAAAATCTTGGGTTTGTTGACCAATTTCCGTATCCCGATTCACCGGAG
GTTGCTTGGGTTCCAAAAAGCTGCACCTTCAGAGTTCCCAGCTTGGGTTA
GTCCCACTGAAAGGAGACTGTTGCAGGAGTCCAAGCCTACCCCAAATGTA
ATTGTGGCTAAAGACGGTTCCGGCCATTTCAGGACCATTAACGAGGCGGT
GCAATTGGTGGGAAAGAAGAACCAATCGAGATTCGTGATCTATGTGAAGG
AAGGCAAGTATGTTGAGAATGTGAATCTGGATAAACACAGGTGGAATGTC
ATGATTTACGGTGATGGCAAAACTAAGACTATAATTTCCGGCAGCCGCAA
CTTTGTTGATGGAACTGCCACCTTTGATACAGCAACTTTCACTGTGGCAG
GAAGGGGATTCATTGCAAAGGACATAAAGTTCGAAAACACAGCAGGTGCA
GCAAAGCACCAAGCAGTGGCTATGCGGTCCGGTTCTGACCGCTCGGTATT
CTACAGCTGTGCATTCGATGCCTACCAGGACACTCTCTATGCTCATTCCA
ATCGTCAGTTTTACAGAGAATGTGACATTTTGGGTACAATTGACTTCATT
TTTGGGAATGCAGCTGTTGTCTTCCAAAACTGCAACATCCAGCCCAGGCA
GCCTTTGCCTAACCAGTTCAACACCATCACAGCTCAAGGCAAAAAAGACC
CTAACCAAAATACTGGCATCTCAATTCAGAAGTGTACAATAACTCCATTT
GGCAACCTTACTGCCAATACTTACCTCGGCAGGCCCTGGAAAGAATTCTC
CACCACCGTTATTATGCAGTCCAACATTGGGGCGTTCTTGAACCCTGTGG
GCTGGAGAGAATGGGTCACTAATGTTGATCCACCCAGCACAATTTTGTAT
GCAGAATATCAAAACACTGGACCTGGATCAACCGTGGATCAAAGGGTAAA
ATGGGCTGGTTATAGGTCCACTCTCTCAGAAGCTGATGCTGGAAAGTTCA
CAGTGGCTAACTTTATACAAGGTGAAGATTGGCTGCCTGCTGCCACTGTA
GCGTATGAACCAGCTTTATGATTTTCATAATAGATTCAAGGGTAGGGTTG
TGAAAAGGTCGAAGATCAAATATTAAGATGGTGTTTTTATTTACCCTTTT
TTTGACATTAAAATTGCTCTGTAGACCTATATATTATATGTTTAACTCAA
ATGACACAAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006501Pectinesterase_inhib_dom
IPR012334Pectin_lyas_fold
IPR000070Pectinesterase_cat
IPR018040Pectinesterase_Tyr_AS
IPR033131Pectinesterase_Asp_AS
IPR011050Pectin_lyase_fold/virulence
Vocabulary: Molecular Function
TermDefinition
GO:0004857enzyme inhibitor activity
GO:0030599pectinesterase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification