g.arboreum_cottongen_reftransV1_0018080, g.arboreum_cottongen_reftransV1_0018080 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: A0A0B2SIY4_GLYSO (Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Glycine soja GN=glysoja_023607 PE=4 SV=1) HSP 1 Score: 334.339 bits (856), Expect = 2.638e-102 Identity = 160/190 (84.21%), Postives = 178/190 (93.68%), Query Frame = -2 Query: 2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568 LNLALPK+KS+ DAKSESE+IIK+TQAI RN+G KR VFYTAQ+IELV+PMVEAVGW LLATFSVTMEEG+N+PRV L MEGFKAGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL LCDS+ ++LQDTWNAVLECVSRLEFIT+TP I+ +VMHGSNQIS+DAVVQSLKELA KP Sbjct: 799 LNLALPKRKSSGDAKSESEAIIKKTQAIFRNKGVKRGVFYTAQQIELVRPMVEAVGWPLLATFSVTMEEGDNKPRVVLLMEGFKAGIHITFVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLVLCDSDMNALQDTWNAVLECVSRLEFITSTPSISVTVMHGSNQISKDAVVQSLKELAAKP 988
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: A0A0B2QCP9_GLYSO (Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Glycine soja GN=glysoja_005970 PE=4 SV=1) HSP 1 Score: 332.028 bits (850), Expect = 1.575e-101 Identity = 160/190 (84.21%), Postives = 176/190 (92.63%), Query Frame = -2 Query: 2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568 LNLALPK+KS+ DAKSESE IIK+TQAI RN+G KR VFYTAQ+IELV+PMVEAVGW LLATFSVTMEEGEN+ RV L MEGFKAGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL LCDS+ +SLQDTWNAVLECVSRLEFIT++P I+A+VMHGSNQIS+D VVQSLKELA KP Sbjct: 799 LNLALPKRKSSGDAKSESEDIIKKTQAIFRNKGVKRGVFYTAQQIELVRPMVEAVGWPLLATFSVTMEEGENKSRVVLLMEGFKAGIHITFVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLVLCDSDMNSLQDTWNAVLECVSRLEFITSSPSISATVMHGSNQISKDGVVQSLKELAAKP 988
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: I1MS24_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 332.028 bits (850), Expect = 1.704e-101 Identity = 160/190 (84.21%), Postives = 176/190 (92.63%), Query Frame = -2 Query: 2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568 LNLALPK+KS+ DAKSESE IIK+TQAI RN+G KR VFYTAQ+IELV+PMVEAVGW LLATFSVTMEEGEN+ RV L MEGFKAGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL LCDS+ +SLQDTWNAVLECVSRLEFIT++P I+A+VMHGSNQIS+D VVQSLKELA KP Sbjct: 799 LNLALPKRKSSGDAKSESEDIIKKTQAIFRNKGVKRGVFYTAQQIELVRPMVEAVGWPLLATFSVTMEEGENKSRVVLLMEGFKAGIHITFVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLVLCDSDMNSLQDTWNAVLECVSRLEFITSSPSISATVMHGSNQISKDGVVQSLKELAAKP 988
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: M5VSF5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000114mg PE=4 SV=1) HSP 1 Score: 330.487 bits (846), Expect = 5.509e-101 Identity = 157/190 (82.63%), Postives = 175/190 (92.11%), Query Frame = -2 Query: 2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568 LNLALP++ + D KSESE+IIK+TQAI RNQGAKR VFY+ Q+++LV+PMVEAVGW LLATFSVTMEEGEN+ RV LCMEGFKAGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL LCD E SLQDTWNAVLECVSRLEFIT+TP IAA+VMHGSNQIS+DAV+QSL+ELAGKP Sbjct: 804 LNLALPRRTLSADTKSESEAIIKKTQAIFRNQGAKRGVFYSTQQLDLVRPMVEAVGWPLLATFSVTMEEGENKSRVVLCMEGFKAGIHITHVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLSLCDMETGSLQDTWNAVLECVSRLEFITSTPSIAATVMHGSNQISKDAVLQSLRELAGKP 993
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: M0WUM1_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1) HSP 1 Score: 322.783 bits (826), Expect = 3.678e-100 Identity = 151/190 (79.47%), Postives = 173/190 (91.05%), Query Frame = -2 Query: 2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568 LNLALP+ KSA D K+ESE IIKQTQA+ +NQG KR VF+ AQ++ELV+PM+EAVGW LLATFSVTMEEG+N+PRV LCMEGFKAGIH+T VLGM+TMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLL L D++ D+LQD WNAVLECVSRLE+IT++P +AA+VM GSNQISRD+VVQSLKELAGKP Sbjct: 767 LNLALPRLKSASDTKAESEKIIKQTQAVFKNQGQKRGVFHVAQQVELVRPMLEAVGWPLLATFSVTMEEGDNKPRVVLCMEGFKAGIHLTRVLGMETMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLALADTDMDALQDAWNAVLECVSRLEYITSSPSMAATVMQGSNQISRDSVVQSLKELAGKP 956
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG5_ARATH (Brefeldin A-inhibited guanine nucleotide-exchange protein 5 OS=Arabidopsis thaliana GN=BIG5 PE=1 SV=2) HSP 1 Score: 324.324 bits (830), Expect = 1.091e-100 Identity = 149/190 (78.42%), Postives = 170/190 (89.47%), Query Frame = -2 Query: 2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568 LNL LPK+ SA DAKSE+E I+++TQ I R G KR VF+T +++++++PMVEAVGW LLA FSVTME G+N+PR+ LCMEGFKAGIHI YVLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALR LLGLCDSEPD+LQDTWNAVLECVSRLEFI +TP IAA+VMHGSNQISRD VVQSLKELAG+P Sbjct: 789 LNLGLPKRISAADAKSETEDIVRKTQEIFRKHGVKRGVFHTVEQVDIIRPMVEAVGWPLLAAFSVTMEVGDNKPRILLCMEGFKAGIHIAYVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRILLGLCDSEPDTLQDTWNAVLECVSRLEFIISTPGIAATVMHGSNQISRDGVVQSLKELAGRP 978
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG3_ARATH (Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Arabidopsis thaliana GN=BIG3 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 4.488e-29 Identity = 56/158 (35.44%), Postives = 99/158 (62.66%), Query Frame = -2 Query: 101 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR--VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFI 568 LN+ +P++ ++ ++ S+ +I+ Q + + K V+Y A ++ +++ MVE +LA FSV +++ ++ LC+EGF IH+T V+ + T R AF+TSL +FT LH+P D++ KN+EA++ ++ L + E + LQD W +L CVSR E + Sbjct: 817 LNIVVPRRGDDMNMET-SDDLIRHMQERFKEKARKSESVYYAASDVIILRFMVEVCWAPMLAAFSVPLDQSDDAVITTLCLEGFHHAIHVTSVMSLKTHRDAFVTSLAKFTSLHSPADIKQKNIEAIKAIVKLAEEEGNYLQDAWEHILTCVSRFEHL 973
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG2_ARATH (Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Arabidopsis thaliana GN=BIG2 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 5.163e-28 Identity = 57/156 (36.54%), Postives = 96/156 (61.54%), Query Frame = -2 Query: 107 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR--VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLE 568 LN+ + KQ A++ S+ ++K Q + + K +Y A ++ +++ M+EA +LA FSV +++ ++ + +C+EGF IH T ++ M T R AF+TSL +FT LH+P D++ +N+EA++ +L L D E + LQD W +L CVSR E Sbjct: 826 LNIVIRKQWGDSYAET-SDDLMKHMQEQFKEKARKSESTYYAATDVVILRFMIEACWAPMLAAFSVPLDQSDDLIVINICLEGFHHAIHATSLMSMKTHRDAFVTSLAKFTSLHSPADIKQRNIEAIKAILRLADEEGNYLQDAWEHILTCVSRFE 980
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG1_ARATH (Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Arabidopsis thaliana GN=BIG1 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 2.454e-25 Identity = 48/138 (34.78%), Postives = 85/138 (61.59%), Query Frame = -2 Query: 101 IIKQTQAIIRNQGAKR--VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFI 508 +IK Q R++ K ++ ++ +++ MVE +LA FSVT+++ ++R C+ GF+ +H+T V+GM T R AF+TS+ +FT LH DM+ KNV+A++ ++ + + + LQD W +L C+SR+E + Sbjct: 767 LIKDIQEKFRSKSGKSESAYHVVTDVAILRFMVEVSWGPMLAAFSVTLDQSDDRLAAVECLRGFRYAVHVTAVMGMQTQRDAFVTSMAKFTNLHCAGDMKQKNVDAVKAIISIAIEDGNHLQDAWEHILTCLSRIEHL 904
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG4_ARATH (Brefeldin A-inhibited guanine nucleotide-exchange protein 4 OS=Arabidopsis thaliana GN=BIG4 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 8.587e-25 Identity = 45/133 (33.83%), Postives = 87/133 (65.41%), Query Frame = -2 Query: 101 QTQAIIRNQGAKRVFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFI 499 Q Q + + ++ V++T +I +++ ++E +LA FSVT+++ ++R +LC++GF+ +H+T V+GM T R AF+TS+ +FT LH DM+ KNV+A++ ++ + + + L +W +L C+SR+E + Sbjct: 795 QEQFQAKPEKSESVYHTVTDISILRFILEVSWGPMLAAFSVTIDQSDDRLATSLCLQGFRYAVHVTAVMGMQTQRDAFVTSMAKFTNLHCAADMKQKNVDAVKAIITIAIEDGNHLHGSWEHILTCLSRIEHL 927
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: SEC7A_SCHPO (Protein transport protein sec71 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec71 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.348e-19 Identity = 42/118 (35.59%), Postives = 72/118 (61.02%), Query Frame = -2 Query: 107 VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLE 460 ++YTA+ E V PM EAV +LA FS ++ + + L ++GF+ +++ + MD R AF+ +L +FT L+ +++ N+ AL+TLL + + D L+D+W VL C+S+LE Sbjct: 958 IYYTARHFEHVCPMFEAVWMPILAAFSEPLQLSSDPALIQLSLDGFRLAMNVIFFFSMDLPRNAFMQTLTKFTHLNNTSELKWTNMHALKTLLEISLAHGDKLRDSWKDVLLCISQLE 1075
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG2_HUMAN (Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo sapiens GN=ARFGEF2 PE=1 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 1.203e-17 Identity = 47/158 (29.75%), Postives = 91/158 (57.59%), Query Frame = -2 Query: 104 NLALPKQKSAVDAKSESESIIKQTQAIIRN-QGAKRVFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPK---DMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEF 565 N+A KQ+ + E E + K +A++ AK F +A ++ V+PM + V LLA +S+ ++ ++ +LC+EG + I I + GM R A++ +L RF+ L A +M+ KN++ ++TL+ + ++ + L ++W+ +L+C+S+LE Sbjct: 845 NVASEKQRRLL-YNLEMEQMAKTAKALMEAVSHAKAPFTSATHLDHVRPMFKLVWTPLLAAYSIGLQNCDDTEVASLCLEGIRCAIRIACIFGMQLERDAYVQALARFSLLTASSSITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLEL 1001
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG2_RAT (Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Rattus norvegicus GN=Arfgef2 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.489e-17 Identity = 46/158 (29.11%), Postives = 91/158 (57.59%), Query Frame = -2 Query: 104 NLALPKQKSAVDAKSESESIIKQTQAIIRN-QGAKRVFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPK---DMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEF 565 N+A KQ+ + E E + K +A++ AK F +A ++ V+PM + V LLA +S+ ++ ++ +LC+EG + + I + GM R A++ +L RF+ L A +M+ KN++ ++TL+ + ++ + L ++W+ +L+C+S+LE Sbjct: 852 NVASEKQRRLL-YNVEMEQMAKTAKALMEAVSHAKAPFTSATHLDHVRPMFKLVWTPLLAAYSIGLQNCDDTEVASLCLEGIRCAVRIACIFGMQLERDAYVQALARFSLLTASSSITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLEL 1008
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG2_MOUSE (Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Mus musculus GN=Arfgef2 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.762e-17 Identity = 42/143 (29.37%), Postives = 84/143 (58.74%), Query Frame = -2 Query: 104 ESESIIKQTQAIIRN-QGAKRVFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPK---DMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEF 520 E E + K +A++ AK F +A ++ V+PM + V LLA +S+ ++ ++ +LC+EG + + I + GM R A++ +L RF+ L A +M+ KN++ ++TL+ + ++ + L ++W+ +L+C+S+LE Sbjct: 866 EMEQMAKTAKALMEAVSHAKAPFTSATHLDHVRPMFKLVWTPLLAAYSIGLQNCDDTEVASLCLEGIRCAVRIACIFGMQLERDAYVQALARFSLLTASSSITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLEL 1008
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: SEC7B_SCHPO (Protein transport protein sec72 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec72 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.548e-16 Identity = 37/127 (29.13%), Postives = 75/127 (59.06%), Query Frame = -2 Query: 107 RNQGAKR--VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLE 481 + G+++ V+Y A E + PM+EA +LA S ++ + + +C++GF+ + I + +D +R AF+ +L FT LH+ +++ +N ++TLL + +E ++L+D+W +L +S+LE Sbjct: 952 QKHGSQKTNVYYNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIACLFDLDLIRDAFIKTLTNFTNLHSTSEIKLRNTMVIKTLLRIASTEGNNLKDSWKDILTIISQLE 1078 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 15
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0018080 ID=g.arboreum_cottongen_reftransV1_0018080; Name=g.arboreum_cottongen_reftransV1_0018080; organism=Gossypium arboreum; type=contig; length=569bpback to top |