g.arboreum_cottongen_reftransV1_0018080, g.arboreum_cottongen_reftransV1_0018080 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0018080
Unique Nameg.arboreum_cottongen_reftransV1_0018080
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length569
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0018080:1..569 .
Chr1:2444765..2445569 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: A0A0B2SIY4_GLYSO (Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Glycine soja GN=glysoja_023607 PE=4 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 2.638e-102
Identity = 160/190 (84.21%), Postives = 178/190 (93.68%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNLALPK+KS+ DAKSESE+IIK+TQAI RN+G KR VFYTAQ+IELV+PMVEAVGW LLATFSVTMEEG+N+PRV L MEGFKAGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL LCDS+ ++LQDTWNAVLECVSRLEFIT+TP I+ +VMHGSNQIS+DAVVQSLKELA KP
Sbjct:  799 LNLALPKRKSSGDAKSESEAIIKKTQAIFRNKGVKRGVFYTAQQIELVRPMVEAVGWPLLATFSVTMEEGDNKPRVVLLMEGFKAGIHITFVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLVLCDSDMNALQDTWNAVLECVSRLEFITSTPSISVTVMHGSNQISKDAVVQSLKELAAKP 988
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: A0A0B2QCP9_GLYSO (Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Glycine soja GN=glysoja_005970 PE=4 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.575e-101
Identity = 160/190 (84.21%), Postives = 176/190 (92.63%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNLALPK+KS+ DAKSESE IIK+TQAI RN+G KR VFYTAQ+IELV+PMVEAVGW LLATFSVTMEEGEN+ RV L MEGFKAGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL LCDS+ +SLQDTWNAVLECVSRLEFIT++P I+A+VMHGSNQIS+D VVQSLKELA KP
Sbjct:  799 LNLALPKRKSSGDAKSESEDIIKKTQAIFRNKGVKRGVFYTAQQIELVRPMVEAVGWPLLATFSVTMEEGENKSRVVLLMEGFKAGIHITFVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLVLCDSDMNSLQDTWNAVLECVSRLEFITSSPSISATVMHGSNQISKDGVVQSLKELAAKP 988
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: I1MS24_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 1.704e-101
Identity = 160/190 (84.21%), Postives = 176/190 (92.63%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNLALPK+KS+ DAKSESE IIK+TQAI RN+G KR VFYTAQ+IELV+PMVEAVGW LLATFSVTMEEGEN+ RV L MEGFKAGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL LCDS+ +SLQDTWNAVLECVSRLEFIT++P I+A+VMHGSNQIS+D VVQSLKELA KP
Sbjct:  799 LNLALPKRKSSGDAKSESEDIIKKTQAIFRNKGVKRGVFYTAQQIELVRPMVEAVGWPLLATFSVTMEEGENKSRVVLLMEGFKAGIHITFVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLVLCDSDMNSLQDTWNAVLECVSRLEFITSSPSISATVMHGSNQISKDGVVQSLKELAAKP 988
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: M5VSF5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000114mg PE=4 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 5.509e-101
Identity = 157/190 (82.63%), Postives = 175/190 (92.11%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNLALP++  + D KSESE+IIK+TQAI RNQGAKR VFY+ Q+++LV+PMVEAVGW LLATFSVTMEEGEN+ RV LCMEGFKAGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL LCD E  SLQDTWNAVLECVSRLEFIT+TP IAA+VMHGSNQIS+DAV+QSL+ELAGKP
Sbjct:  804 LNLALPRRTLSADTKSESEAIIKKTQAIFRNQGAKRGVFYSTQQLDLVRPMVEAVGWPLLATFSVTMEEGENKSRVVLCMEGFKAGIHITHVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLSLCDMETGSLQDTWNAVLECVSRLEFITSTPSIAATVMHGSNQISKDAVLQSLRELAGKP 993
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: M0WUM1_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 3.678e-100
Identity = 151/190 (79.47%), Postives = 173/190 (91.05%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNLALP+ KSA D K+ESE IIKQTQA+ +NQG KR VF+ AQ++ELV+PM+EAVGW LLATFSVTMEEG+N+PRV LCMEGFKAGIH+T VLGM+TMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLL L D++ D+LQD WNAVLECVSRLE+IT++P +AA+VM GSNQISRD+VVQSLKELAGKP
Sbjct:  767 LNLALPRLKSASDTKAESEKIIKQTQAVFKNQGQKRGVFHVAQQVELVRPMLEAVGWPLLATFSVTMEEGDNKPRVVLCMEGFKAGIHLTRVLGMETMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLALADTDMDALQDAWNAVLECVSRLEYITSSPSMAATVMQGSNQISRDSVVQSLKELAGKP 956
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG1_RAT (Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Rattus norvegicus GN=Arfgef1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.766e-15
Identity = 36/121 (29.75%), Postives = 71/121 (58.68%), Query Frame = -2 
Query:  104 FYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPK---DMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEF 457
            F +A  +E V+PM +      LA FSV +++ ++    +LC+EG +  I I  +  +   R A++ +L RFT L       +M+ KN++ ++TL+ +  ++ + L ++W+ +L+C+S+LE 
Sbjct:  933 FTSATHLEHVRPMFKLAWTPFLAAFSVGLQDCDDTDVASLCLEGIRCAIRIACIFSIQLERDAYVQALARFTLLTVSSGITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLEL 1053
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG1_MOUSE (Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Mus musculus GN=Arfgef1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.900e-15
Identity = 36/121 (29.75%), Postives = 71/121 (58.68%), Query Frame = -2 
Query:  104 FYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPK---DMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEF 457
            F +A  +E V+PM +      LA FSV +++ ++    +LC+EG +  I I  +  +   R A++ +L RFT L       +M+ KN++ ++TL+ +  ++ + L ++W+ +L+C+S+LE 
Sbjct:  933 FTSATHLEHVRPMFKLAWTPFLAAFSVGLQDCDDTEVASLCLEGIRCAIRIACIFSIQLERDAYVQALARFTLLTVSSGITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLEL 1053
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG1_HUMAN (Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Homo sapiens GN=ARFGEF1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.900e-15
Identity = 36/121 (29.75%), Postives = 71/121 (58.68%), Query Frame = -2 
Query:  104 FYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPK---DMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEF 457
            F +A  +E V+PM +      LA FSV +++ ++    +LC+EG +  I I  +  +   R A++ +L RFT L       +M+ KN++ ++TL+ +  ++ + L ++W+ +L+C+S+LE 
Sbjct:  936 FTSATHLEHVRPMFKLAWTPFLAAFSVGLQDCDDTEVASLCLEGIRCAIRIACIFSIQLERDAYVQALARFTLLTVSSGITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLEL 1056
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG1_BOVIN (Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Bos taurus GN=ARFGEF1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.971e-15
Identity = 36/121 (29.75%), Postives = 71/121 (58.68%), Query Frame = -2 
Query:  104 FYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPK---DMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEF 457
            F +A  +E V+PM +      LA FSV +++ ++    +LC+EG +  I I  +  +   R A++ +L RFT L       +M+ KN++ ++TL+ +  ++ + L ++W+ +L+C+S+LE 
Sbjct:  936 FTSATHLEHVRPMFKLAWTPFLAAFSVGLQDCDDTEVASLCLEGIRCAIRIACIFSIQLERDAYVQALARFTLLTVSSGITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLEL 1056
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: SEC7_YEAST (Protein transport protein SEC7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC7 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.258e-13
Identity = 38/125 (30.40%), Postives = 68/125 (54.40%), Query Frame = -2 
Query:  107 RNQGAKRVFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLE 481
            +N+G   V+Y A  +E VK + E +  S LA  +   ++ ++      C+EG K  I I     ++  R +F+ +LV+F  L   ++++ KNV A+  LL +  SE + L+ +W  +L  VS++E
Sbjct: 1068 KNKGGPDVYYAASHVEHVKSIFETLWMSFLAALTPPFKDYDDIDTTNKCLEGLKISIKIASTFRINDARTSFVGALVQFCNLQNLEEIKVKNVNAMVILLEVALSEGNYLEGSWKDILLVVSQME 1192
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2SIY4_GLYSO2.638e-10284.21Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
A0A0B2QCP9_GLYSO1.575e-10184.21Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
I1MS24_SOYBN1.704e-10184.21Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
M5VSF5_PRUPE5.509e-10182.63Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
M0WUM1_HORVD3.678e-10079.47Uncharacterized protein OS=Hordeum vulgare var. di... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
BIG1_RAT1.766e-1529.75Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
BIG1_MOUSE1.900e-1529.75Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
BIG1_HUMAN1.900e-1529.75Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
BIG1_BOVIN1.971e-1529.75Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
SEC7_YEAST7.258e-1330.40Protein transport protein SEC7 OS=Saccharomyces ce... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10663:SF189SH3 DOMAIN-CONTAINING PROTEINcoord: 10..56
coord: 138..187
NoneNo IPR availablePANTHERPTHR10663GUANYL-NUCLEOTIDE EXCHANGE FACTORcoord: 10..56
coord: 138..187

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0018080 ID=g.arboreum_cottongen_reftransV1_0018080; Name=g.arboreum_cottongen_reftransV1_0018080; organism=Gossypium arboreum; type=contig; length=569bp
CAGGTTTCCCAGCCAACTCTTTCAGTGACTGCACAACAGCATCCCTGGAG
ATCTGATTTGATCCATGCATGACACTTGCAGCAATAACAGGAGTTGTTGT
TATAAATTCAAGCCGAGAAACACATTCAAGAACAGCATTCCATGTGTCTT
GAAGAGAATCTGGTTCTGAGTCACATAAACCCAATAGAGTCCGCAATGCT
TCCACATTTTTACTACGCATATCCTTTGGGGCATGCAAGAAAGTAAACCT
GACTAGAGATGTTAAAAAGGCATAGCGCATTGTATCCATTCCGAGGACAT
ATGTGATATGTATCCCAGCTTTAAATCCTTCCATACAAAGAGCAACCCTC
GGCCTATTTTCACCTTCCTCCATTGTAACAGAGAAGGTAGCCAGCAATGA
CCATCCTACAGCTTCAACCATGGGTTTAACAAGTTCAATCTCTTGTGCAG
TGTAAAAAACTCTTTTTGCTCCTTGGTTTCGGATGATAGCCTGTGTCTGC
TTAATTATTGATTCACTTTCAGACTTAGCATCAACTGCTGATTTTTGTTT
AGGTAGAGCCAGATTAAGG
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