g.arboreum_cottongen_reftransV1_0005846, g.arboreum_cottongen_reftransV1_0005846 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: V7AN32_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G098800g PE=4 SV=1) HSP 1 Score: 449.129 bits (1154), Expect = 1.627e-145 Identity = 326/618 (52.75%), Postives = 407/618 (65.86%), Query Frame = 1 Query: 112 ASSLKEYLXXXXXXXXXXXXXXXXXXXXXXXXXSSGVLVVDEDPVWQKPVNLEEDEGNDSPDE-KPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNSDISPPRR----------QRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPRSPGLKSDLSPPRRS-------RAHNET------TLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGTDLSPPRKRRVRNDTPSPEPLANR-AGADLSPPRKRRARNDTPSPKRRVKPLREGADSDMSPPQ--QRSRRRHTQSPEPDMSPPRQSHAQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 ++SLK+YLKRYET EE++K K+K+KKK++P+++G+LVVDEDP WQKP++LEE+ ++S DE KP VDEDI+VKRMKRLEQ+R RR Y+AI+EDGSGWVSLS N +D N+DISPPR+ Q RNDTPSP+ + S+++ D+SPPR+ R SPPRR R H+++ + A + + R D SPP RR ++ + +D D+SPPR R R+D+PS + ++ + DLSPPRK + +N S +NR + DLSPPR R+D+PS L SD+SPP+ Q++ R S P S S D DL+PPRK+ +ES+ PAS KTGLISG DIR+EI K K DD LRF +MDPS+SGRGAEPV+RDK KG RISKEEYLKSK+K E+ + + LAQKREAE RL+ELELEK KPFARTRDDPELD MLK+RLRWGDPMAHLVKKK PE VL +LG+ E+MKESGFVVPQDIP HSW+ R LDAA NRYGIRPGRHWDGVDRSNGFEK MF + NE++A +REAYLWSVSDM Sbjct: 3 SNSLKDYLKRYETNTVEEKKKTKKKQKKKSQPQTTGLLVVDEDPTWQKPIDLEEENNDNSSDEEKPQVDEDIDVKRMKRLEQLRARRPYHAISEDGSGWVSLSSNPENYIDSNNDISPPRKRKGADLSPGQQLKRNDTPSPD----YRTSDLQ--DISPPRRGRHD------SPPRRGHHDSPPRRGHHDSPPQDALHGSVASDLSPRRKILKNAARTGLRDISHGRSPKDFSPP--RRDQHDYET-------SDLQDISPPR--RSRHDSPS-QDVMRGSVAPDLSPPRKIQ-KNVARSGFSYSNRRSPQDLSPPR--HGRHDSPS----QDALHGSVVSDLSPPRKIQKNVGRLGSSDLSRHHSPSISVKVGSHPSLDPDLAPPRKNTKESSNPAS-----KTGLISGKDIRDEIDKKKSDDMLRFNKMDPSISGRGAEPVYRDKIKGVRISKEEYLKSKQKVEEKPKEIEIEWGKG-LAQKREAEARLKELELEKEKPFARTRDDPELDKMLKERLRWGDPMAHLVKKKYPEPVLPNLGENEKMKESGFVVPQDIPNHSWLKRGLDAASNRYGIRPGRHWDGVDRSNGFEKDMFKRTNERQARDREAYLWSVSDM 583
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: M4EYH8_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra033870 PE=4 SV=1) HSP 1 Score: 447.973 bits (1151), Expect = 1.731e-145 Identity = 308/580 (53.10%), Postives = 375/580 (64.66%), Query Frame = 1 Query: 214 SGVLVVDEDPVWQKPVN-LEEDEGNDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDP--NSDISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPR-----SP----------GLKSDLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGT----DLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRR-VKPLREGADSDMSPPQQRSRRRHTQSPEPDMSPPRQSHAQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 +GVLVVDEDPVWQK V+ EED N S +E+P+VDEDIEVKRM+RLE+I+ RR NAIAEDGSGWVSLS DP + DISPPRR RTRND+PSPEPG S + D+SPPR+ + SP L SDL+PPR+ RA N++ +P PE ++ G DLSPPRK RV SPE R+D DLSPPR+++ S N+ DLSPPR+RR + +P P RR K L G++SD+SPP++ + ++ + D+SP R+ +++S D SPPR+ RRES P + K+Q KTGLISG DI E K K+D+ LRFK MD ++G+ AE VFRDK G+RISKEEYL+SK+K EKPKE +LEWG+GLAQKR+AE RLQELELEK KPFARTRDDPELD M+K+R+RWGDPMAHLVKKKQ E L DLGD E MK+SGFV+PQ IP HSWI R L+AAPNRYGI+PGRHWDGVDRS G EK F K +EK+ATE EAYLWSV+DM Sbjct: 37 TGVLVVDEDPVWQKQVDPHEEDNENYSAEERPVVDEDIEVKRMRRLEEIKARRAQNAIAEDGSGWVSLS------SDPQRSDDISPPRRHRTRNDSPSPEPG--GSRGSLPETDMSPPRRRKRHYTPSPEPNRLHAKPVSLDSDLTPPRKRRARNDSP---------------------------------------------SPEPEDPAPKSLGEDLSPPRKRRVH--PVSPERSRKRSDSLELDGDLSPPRRKK-----DSLVSDVNKRSNDLSPPRRRRYHSPSPEPGRRPSKSL--GSNSDLSPPRRSVSVKGSR--DSDLSPQRKPVSRSSNF----DSSPPRRPRRESPPPQTSKEQRKTGLISGKDIGSEYRKKKQDEQLRFKNMDSELTGQNAEAVFRDKITGKRISKEEYLQSKQKKVIEKPKEIKLEWGQGLAQKRDAEARLQELELEKDKPFARTRDDPELDQMMKERVRWGDPMAHLVKKKQYEAPLMDLGDNEEMKKSGFVIPQSIPKHSWITRGLEAAPNRYGIKPGRHWDGVDRSTGHEKDRFKKTSEKKATESEAYLWSVADM 548
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: A0A0A0LTH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428990 PE=4 SV=1) HSP 1 Score: 441.81 bits (1135), Expect = 5.225e-143 Identity = 291/563 (51.69%), Postives = 361/563 (64.12%), Query Frame = 1 Query: 217 GVLVVDEDPVWQKPVNLEEDEGNDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNSDISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDL---SPPRKPRSPGLKSDLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGT----DLSPPRKHRVRNDTPSPEPLVNRTDGTDLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPLREGADSDMSPPQQRSRRRHTQSPEPDMSPPRQSHAQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 GVLVVDEDPVWQKP+ +EED ++S DE+P VDED+EVKRM+RLE+++ +R YN+I+EDGSGWVSLSP AN+ NSD+SPPRR R RNDTPSP L+ E +D + L+ D P N T + + R G+ + ++ DLSPP +RR R TPSPEP D+SPPR R+D + + + DLSPPR+R +D E ++ G+DLSPPRK+R K +R D S ++SR +H + +DLSPPRK ++E S KQ KTGL++ + EE+SKT K+DW RFKEM+PS S A+PV+RDK KG+RISKEE+L R EEK KE +LEWGKGLAQKREAE L ELELEK +PFAR+R+D ELD ML+DRLRWGDPMAHLVKK+Q E+ L DLGD E+MKESGF++PQDIPPHSW+ R LDAAPNRYGIRPGRHWDGVDRSNGFEK+MF ++NEK+ATEREAYLWSVSDM Sbjct: 42 GVLVVDEDPVWQKPIIIEEDNADNSTDEEPQVDEDVEVKRMRRLEELKAKRPYNSISEDGSGWVSLSPNRANSSMVNSDMSPPRRTRVRNDTPSPSNELKPPVPGEEGEDFSPPRRRPRKPPSSLEHDEKPT------NSTYPSSSPTQKDKVYRDAHLQGANSWHIDYAQEDIDLSPPRQRRKRYHTPSPEPDATCTRSVSPQFDISPPR----RSDRKASKTSLGGNHKVDLSPPRRR--ASDYVGDERISR--GSDLSPPRKQR------------KDVR----GDRSLLDKQSR----------------NHVTDASQESPTDLSPPRKKQKELPVSVSFKQTRKTGLLTQQEFGEEMSKTNKEDWTRFKEMNPSASS-NADPVYRDKIKGDRISKEEFL-KARGKIEEKAKEIKLEWGKGLAQKREAEAELMELELEKDRPFARSRNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 556
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: M0U661_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 423.705 bits (1088), Expect = 3.374e-136 Identity = 285/567 (50.26%), Postives = 361/567 (63.67%), Query Frame = 1 Query: 217 GVLVVDEDPVWQKPVNLEEDEGNDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLS--PKHANTVDPNSDISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPRSPGLKSDLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGTDLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPL----REGADSDMSPPQQRSRRRHTQSPEPDMSPPRQSHAQTSELVHD-----SDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 G+LVVDEDPVWQKPV +E++E S DEKP ++EDIEVKRMKRL+ IR R+ Y+AI+EDGSGWVS+S K + + DI PPR+ R R DTPSPEP + S S+ SDLSPPR+ RA + + A G D+SPPW+R + +P + DLSPPR+ + ++ + P+ + D DLSPPR RR R +P D+S PR+ RR+ P R D+D+SPP R+ ++ D+SPPR+ H Q+ E + +DLSPPRKSR+E+ S K+ + GL S +I+EEI K KK+D RF MDP +SGRGAEPVFRDK +G+RISKEE L + +EKPKEK+LEWGKGLAQKREAE +ELELE+ KPFARTRDDPELD MLK+R+RWGDPMAH+VK+K +L+L+DLGD E+MKESGF++PQ IP HSW+ R +D PNRYG +PGRHWDGVDRSNGFEK++F + NEKRATEREAYLWSVSDM Sbjct: 47 GILVVDEDPVWQKPVQIEQEESEPSGDEKPQIEEDIEVKRMKRLDAIRARKPYHAISEDGSGWVSISDPSKTSKSAAIGRDICPPRQGRARFDTPSPEPKEKPSGSQ-----------------NSDLSPPRQRRADTPSP--------------------EPEKAVAGDGTADISPPWRRSRDDNSPPRRTRRAHSPVPDLSPPRRSQ-KDLSDDPKVSSRQQDPVDLSPPR-RRQRVSSP-----------DISLPRR----------TRRLSPGAGGPRASDDADLSPP-----RKSSKCLSDDLSPPRRIHPQSPEAIRRQSSPVADLSPPRKSRKEA---PSAKESRRAGLFSAKEIKEEIEKKKKEDTSRFASMDPFLSGRGAEPVFRDK-EGKRISKEEML---KTQEKEKPKEKKLEWGKGLAQKREAEANAKELELEREKPFARTRDDPELDKMLKERIRWGDPMAHVVKRKSSDLILEDLGDNEKMKESGFIIPQTIPSHSWLKRGIDFPPNRYGTKPGRHWDGVDRSNGFEKELFKRQNEKRATEREAYLWSVSDM 541
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: J3MQV4_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB08G14830 PE=4 SV=1) HSP 1 Score: 423.705 bits (1088), Expect = 9.333e-136 Identity = 296/589 (50.25%), Postives = 366/589 (62.14%), Query Frame = 1 Query: 220 VLVVDEDPVWQKPVNLEEDEGNDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNS------------------DISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPR------SP-----GLKSDLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGTDLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPLREG-ADS----DMSPPQQRSRRRHTQSPEPDMSPPRQSHAQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 VL+VDEDP WQKPV +EE E S DEKPLVDEDIEVKRM+RLE IR R YNAIAEDGSGWV+++ +PN D+SPPRR R R DTPSP+P + KDLSPPR+ R SP + DLSPPR+SR +++ R + S DLSPP +RR R+ + P+ DLSPPR+ RVR+D+ P+ DLSPPR RRVR+D+ P+ DLSPPR RR R+D+ PK P R DS D+SPP RR S EP PRQ + + D D+SPPRKS++E K + GL++ +++E+I K K+D+ L+F DPS+ G+GA+ VFRDK +G+RIS+E+ K+ + KPKE +EWGKGL QKREAE RL ELE EKSKPFARTRDDPELD MLK+R+RWGDPMAHLVK+ +L+L+DLGD E+MKESGF+VPQ+IP HSW+ R +D PNRYGI+PGRHWDGVDRSNGFEK MF NEK+ATE+EAYLWSVSDM Sbjct: 53 VLIVDEDPTWQKPVQIEE-EPPSSGDEKPLVDEDIEVKRMRRLEAIRAARPYNAIAEDGSGWVTVAAPEEPNEEPNGCRRRNDTPSPERGGAGRKDLSPPRR-RQRQDTPSPDP------RDAVGKDLSPPRQRRKRQDTPSPKGNEIAAQDDLSPPRKSRQQQDSSPPRRLARHD------------------SEDPQDLSPP-RRRTRHDSEEPQ---------DLSPPRR-RVRHDSEEPK---------DLSPPR-RRVRHDSEEPK--------DLSPPR-RRTRHDSEEPKDLSPPRRRTRHDSEEPKDLSPP---CRRMRHGSHEPKDKLPRQKRQSLDKSLDDGDISPPRKSKKE----VPPKDVRRAGLMTAEEVKEDIRKIKEDERLKFAAQDPSMIGKGAKAVFRDK-QGKRISEEDM---KKAKEDTKPKEIHIEWGKGLVQKREAEARLHELEAEKSKPFARTRDDPELDTMLKNRIRWGDPMAHLVKRNDTDLLLEDLGDNEKMKESGFIVPQNIPSHSWLKRGVDPPPNRYGIKPGRHWDGVDRSNGFEKDMFKLKNEKQATEQEAYLWSVSDM 574
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy Swiss-Prot
Match: CWC26_CRYNJ (Pre-mRNA-splicing factor CWC26 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC26 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.099e-10 Identity = 43/117 (36.75%), Postives = 56/117 (47.86%), Query Frame = 1 Query: 1534 FARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 R++DD ++ +K+ RW DP A + KK+ + + + P W APNR+GI PG WDGVDRSNGFEKK F N + E E WSV DM Sbjct: 239 VGRSKDDVRMNKEMKEEERWNDPAAAFLTKKK----------KKGPRRPKYEGP-------W-------APNRFGIAPGFRWDGVDRSNGFEKKYFQAQNTRARREYEHNQWSVEDM 331
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy Swiss-Prot
Match: CWC26_CRYNB (Pre-mRNA-splicing factor CWC26 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CWC26 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.099e-10 Identity = 43/117 (36.75%), Postives = 56/117 (47.86%), Query Frame = 1 Query: 1534 FARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 R++DD ++ +K+ RW DP A + KK+ + + + P W APNR+GI PG WDGVDRSNGFEKK F N + E E WSV DM Sbjct: 239 VGRSKDDVRMNKEMKEEERWNDPAAAFLTKKK----------KKGPRRPKYEGP-------W-------APNRFGIAPGFRWDGVDRSNGFEKKYFQAQNTRARREYEHNQWSVEDM 331
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy Swiss-Prot
Match: CWC26_DEBHA (Pre-mRNA-splicing factor CWC26 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CWC26 PE=3 SV=2) HSP 1 Score: 61.2326 bits (147), Expect = 6.358e-9 Identity = 38/115 (33.04%), Postives = 56/115 (48.70%), Query Frame = 1 Query: 1516 LEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREA 1860 L+++K F+ + D E + ++K + R+ DP+ +KQ K +M + V PQ NR+ IR G WDG+DRSNGFE + K NE T+REA Sbjct: 161 LDQNKSFSVSTRDSEYNELMKSKQRFDDPLQSFSSQKQTVATSK----TGKMYYNKGVSPQ----------------NRFNIRAGFFWDGIDRSNGFEDLIVRKRNEVSYTKREA 255 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 13
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0005846 ID=g.arboreum_cottongen_reftransV1_0005846; Name=g.arboreum_cottongen_reftransV1_0005846; organism=Gossypium arboreum; type=contig; length=2091bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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