g.arboreum_cottongen_reftransV1_0005846, g.arboreum_cottongen_reftransV1_0005846 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005846
Unique Nameg.arboreum_cottongen_reftransV1_0005846
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length2091
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr4chromosomeg.arboreum_cottongen_reftransV1_0005846:1..2091 .
Chr4:64486991..64490876 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: V7AN32_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G098800g PE=4 SV=1)

HSP 1 Score: 449.129 bits (1154), Expect = 1.627e-145
Identity = 326/618 (52.75%), Postives = 407/618 (65.86%), Query Frame = 1
Query:  112 ASSLKEYLXXXXXXXXXXXXXXXXXXXXXXXXXSSGVLVVDEDPVWQKPVNLEEDEGNDSPDE-KPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNSDISPPRR----------QRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPRSPGLKSDLSPPRRS-------RAHNET------TLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGTDLSPPRKRRVRNDTPSPEPLANR-AGADLSPPRKRRARNDTPSPKRRVKPLREGADSDMSPPQ--QRSRRRHTQSPEPDMSPPRQSHAQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884
            ++SLK+YLKRYET   EE++K K+K+KKK++P+++G+LVVDEDP WQKP++LEE+  ++S DE KP VDEDI+VKRMKRLEQ+R RR Y+AI+EDGSGWVSLS    N +D N+DISPPR+          Q  RNDTPSP+    +  S+++  D+SPPR+ R        SPPRR        R H+++        +               A +    +   R   D SPP  RR ++   +       +D  D+SPPR  R R+D+PS + ++  +   DLSPPRK + +N   S    +NR +  DLSPPR    R+D+PS       L     SD+SPP+  Q++  R   S       P  S    S    D DL+PPRK+ +ES+ PAS     KTGLISG DIR+EI K K DD LRF +MDPS+SGRGAEPV+RDK KG RISKEEYLKSK+K  E+  + +       LAQKREAE RL+ELELEK KPFARTRDDPELD MLK+RLRWGDPMAHLVKKK PE VL +LG+ E+MKESGFVVPQDIP HSW+ R LDAA NRYGIRPGRHWDGVDRSNGFEK MF + NE++A +REAYLWSVSDM
Sbjct:    3 SNSLKDYLKRYETNTVEEKKKTKKKQKKKSQPQTTGLLVVDEDPTWQKPIDLEEENNDNSSDEEKPQVDEDIDVKRMKRLEQLRARRPYHAISEDGSGWVSLSSNPENYIDSNNDISPPRKRKGADLSPGQQLKRNDTPSPD----YRTSDLQ--DISPPRRGRHD------SPPRRGHHDSPPRRGHHDSPPQDALHGSVASDLSPRRKILKNAARTGLRDISHGRSPKDFSPP--RRDQHDYET-------SDLQDISPPR--RSRHDSPS-QDVMRGSVAPDLSPPRKIQ-KNVARSGFSYSNRRSPQDLSPPR--HGRHDSPS----QDALHGSVVSDLSPPRKIQKNVGRLGSSDLSRHHSPSISVKVGSHPSLDPDLAPPRKNTKESSNPAS-----KTGLISGKDIRDEIDKKKSDDMLRFNKMDPSISGRGAEPVYRDKIKGVRISKEEYLKSKQKVEEKPKEIEIEWGKG-LAQKREAEARLKELELEKEKPFARTRDDPELDKMLKERLRWGDPMAHLVKKKYPEPVLPNLGENEKMKESGFVVPQDIPNHSWLKRGLDAASNRYGIRPGRHWDGVDRSNGFEKDMFKRTNERQARDREAYLWSVSDM 583          
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: M4EYH8_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra033870 PE=4 SV=1)

HSP 1 Score: 447.973 bits (1151), Expect = 1.731e-145
Identity = 308/580 (53.10%), Postives = 375/580 (64.66%), Query Frame = 1
Query:  214 SGVLVVDEDPVWQKPVN-LEEDEGNDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDP--NSDISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPR-----SP----------GLKSDLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGT----DLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRR-VKPLREGADSDMSPPQQRSRRRHTQSPEPDMSPPRQSHAQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884
            +GVLVVDEDPVWQK V+  EED  N S +E+P+VDEDIEVKRM+RLE+I+ RR  NAIAEDGSGWVSLS       DP  + DISPPRR RTRND+PSPEPG   S   +   D+SPPR+ +     SP           L SDL+PPR+ RA N++                                              +P PE    ++ G DLSPPRK RV     SPE    R+D      DLSPPR+++      S     N+   DLSPPR+RR  + +P P RR  K L  G++SD+SPP++    + ++  + D+SP R+  +++S      D SPPR+ RRES  P + K+Q KTGLISG DI  E  K K+D+ LRFK MD  ++G+ AE VFRDK  G+RISKEEYL+SK+K   EKPKE +LEWG+GLAQKR+AE RLQELELEK KPFARTRDDPELD M+K+R+RWGDPMAHLVKKKQ E  L DLGD E MK+SGFV+PQ IP HSWI R L+AAPNRYGI+PGRHWDGVDRS G EK  F K +EK+ATE EAYLWSV+DM
Sbjct:   37 TGVLVVDEDPVWQKQVDPHEEDNENYSAEERPVVDEDIEVKRMRRLEEIKARRAQNAIAEDGSGWVSLS------SDPQRSDDISPPRRHRTRNDSPSPEPG--GSRGSLPETDMSPPRRRKRHYTPSPEPNRLHAKPVSLDSDLTPPRKRRARNDSP---------------------------------------------SPEPEDPAPKSLGEDLSPPRKRRVH--PVSPERSRKRSDSLELDGDLSPPRRKK-----DSLVSDVNKRSNDLSPPRRRRYHSPSPEPGRRPSKSL--GSNSDLSPPRRSVSVKGSR--DSDLSPQRKPVSRSSNF----DSSPPRRPRRESPPPQTSKEQRKTGLISGKDIGSEYRKKKQDEQLRFKNMDSELTGQNAEAVFRDKITGKRISKEEYLQSKQKKVIEKPKEIKLEWGQGLAQKRDAEARLQELELEKDKPFARTRDDPELDQMMKERVRWGDPMAHLVKKKQYEAPLMDLGDNEEMKKSGFVIPQSIPKHSWITRGLEAAPNRYGIKPGRHWDGVDRSTGHEKDRFKKTSEKKATESEAYLWSVADM 548          
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: A0A0A0LTH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428990 PE=4 SV=1)

HSP 1 Score: 441.81 bits (1135), Expect = 5.225e-143
Identity = 291/563 (51.69%), Postives = 361/563 (64.12%), Query Frame = 1
Query:  217 GVLVVDEDPVWQKPVNLEEDEGNDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNSDISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDL---SPPRKPRSPGLKSDLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGT----DLSPPRKHRVRNDTPSPEPLVNRTDGTDLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPLREGADSDMSPPQQRSRRRHTQSPEPDMSPPRQSHAQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884
            GVLVVDEDPVWQKP+ +EED  ++S DE+P VDED+EVKRM+RLE+++ +R YN+I+EDGSGWVSLSP  AN+   NSD+SPPRR R RNDTPSP   L+      E +D        +     L+ D  P       N T  +   +      R     G+    +  ++   DLSPP +RR R  TPSPEP            D+SPPR    R+D  + +  +      DLSPPR+R   +D    E ++   G+DLSPPRK+R            K +R     D S   ++SR                +H   +     +DLSPPRK ++E     S KQ  KTGL++  +  EE+SKT K+DW RFKEM+PS S   A+PV+RDK KG+RISKEE+L   R   EEK KE +LEWGKGLAQKREAE  L ELELEK +PFAR+R+D ELD ML+DRLRWGDPMAHLVKK+Q E+ L DLGD E+MKESGF++PQDIPPHSW+ R LDAAPNRYGIRPGRHWDGVDRSNGFEK+MF ++NEK+ATEREAYLWSVSDM
Sbjct:   42 GVLVVDEDPVWQKPIIIEEDNADNSTDEEPQVDEDVEVKRMRRLEELKAKRPYNSISEDGSGWVSLSPNRANSSMVNSDMSPPRRTRVRNDTPSPSNELKPPVPGEEGEDFSPPRRRPRKPPSSLEHDEKPT------NSTYPSSSPTQKDKVYRDAHLQGANSWHIDYAQEDIDLSPPRQRRKRYHTPSPEPDATCTRSVSPQFDISPPR----RSDRKASKTSLGGNHKVDLSPPRRR--ASDYVGDERISR--GSDLSPPRKQR------------KDVR----GDRSLLDKQSR----------------NHVTDASQESPTDLSPPRKKQKELPVSVSFKQTRKTGLLTQQEFGEEMSKTNKEDWTRFKEMNPSASS-NADPVYRDKIKGDRISKEEFL-KARGKIEEKAKEIKLEWGKGLAQKREAEAELMELELEKDRPFARSRNDAELDTMLRDRLRWGDPMAHLVKKRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKRMNEKQATEREAYLWSVSDM 556          
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: M0U661_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 423.705 bits (1088), Expect = 3.374e-136
Identity = 285/567 (50.26%), Postives = 361/567 (63.67%), Query Frame = 1
Query:  217 GVLVVDEDPVWQKPVNLEEDEGNDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLS--PKHANTVDPNSDISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPRSPGLKSDLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGTDLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPL----REGADSDMSPPQQRSRRRHTQSPEPDMSPPRQSHAQTSELVHD-----SDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884
            G+LVVDEDPVWQKPV +E++E   S DEKP ++EDIEVKRMKRL+ IR R+ Y+AI+EDGSGWVS+S   K + +     DI PPR+ R R DTPSPEP  + S S+                  SDLSPPR+ RA   +                        +  A  G  D+SPPW+R   + +P        +   DLSPPR+ + ++ +  P+    + D  DLSPPR RR R  +P           D+S PR+           RR+ P     R   D+D+SPP     R+ ++    D+SPPR+ H Q+ E +       +DLSPPRKSR+E+    S K+  + GL S  +I+EEI K KK+D  RF  MDP +SGRGAEPVFRDK +G+RISKEE L   +   +EKPKEK+LEWGKGLAQKREAE   +ELELE+ KPFARTRDDPELD MLK+R+RWGDPMAH+VK+K  +L+L+DLGD E+MKESGF++PQ IP HSW+ R +D  PNRYG +PGRHWDGVDRSNGFEK++F + NEKRATEREAYLWSVSDM
Sbjct:   47 GILVVDEDPVWQKPVQIEQEESEPSGDEKPQIEEDIEVKRMKRLDAIRARKPYHAISEDGSGWVSISDPSKTSKSAAIGRDICPPRQGRARFDTPSPEPKEKPSGSQ-----------------NSDLSPPRQRRADTPSP--------------------EPEKAVAGDGTADISPPWRRSRDDNSPPRRTRRAHSPVPDLSPPRRSQ-KDLSDDPKVSSRQQDPVDLSPPR-RRQRVSSP-----------DISLPRR----------TRRLSPGAGGPRASDDADLSPP-----RKSSKCLSDDLSPPRRIHPQSPEAIRRQSSPVADLSPPRKSRKEA---PSAKESRRAGLFSAKEIKEEIEKKKKEDTSRFASMDPFLSGRGAEPVFRDK-EGKRISKEEML---KTQEKEKPKEKKLEWGKGLAQKREAEANAKELELEREKPFARTRDDPELDKMLKERIRWGDPMAHVVKRKSSDLILEDLGDNEKMKESGFIIPQTIPSHSWLKRGIDFPPNRYGTKPGRHWDGVDRSNGFEKELFKRQNEKRATEREAYLWSVSDM 541          
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: J3MQV4_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB08G14830 PE=4 SV=1)

HSP 1 Score: 423.705 bits (1088), Expect = 9.333e-136
Identity = 296/589 (50.25%), Postives = 366/589 (62.14%), Query Frame = 1
Query:  220 VLVVDEDPVWQKPVNLEEDEGNDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNS------------------DISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPR------SP-----GLKSDLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGTDLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPLREG-ADS----DMSPPQQRSRRRHTQSPEPDMSPPRQSHAQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884
            VL+VDEDP WQKPV +EE E   S DEKPLVDEDIEVKRM+RLE IR  R YNAIAEDGSGWV+++       +PN                   D+SPPRR R R DTPSP+P       +   KDLSPPR+ R      SP       + DLSPPR+SR   +++  R  +                     S    DLSPP +RR R+ +  P+         DLSPPR+ RVR+D+  P+         DLSPPR RRVR+D+  P+        DLSPPR RR R+D+  PK    P R    DS    D+SPP    RR    S EP    PRQ      + + D D+SPPRKS++E       K   + GL++  +++E+I K K+D+ L+F   DPS+ G+GA+ VFRDK +G+RIS+E+    K+   + KPKE  +EWGKGL QKREAE RL ELE EKSKPFARTRDDPELD MLK+R+RWGDPMAHLVK+   +L+L+DLGD E+MKESGF+VPQ+IP HSW+ R +D  PNRYGI+PGRHWDGVDRSNGFEK MF   NEK+ATE+EAYLWSVSDM
Sbjct:   53 VLIVDEDPTWQKPVQIEE-EPPSSGDEKPLVDEDIEVKRMRRLEAIRAARPYNAIAEDGSGWVTVAAPEEPNEEPNGCRRRNDTPSPERGGAGRKDLSPPRR-RQRQDTPSPDP------RDAVGKDLSPPRQRRKRQDTPSPKGNEIAAQDDLSPPRKSRQQQDSSPPRRLARHD------------------SEDPQDLSPP-RRRTRHDSEEPQ---------DLSPPRR-RVRHDSEEPK---------DLSPPR-RRVRHDSEEPK--------DLSPPR-RRTRHDSEEPKDLSPPRRRTRHDSEEPKDLSPP---CRRMRHGSHEPKDKLPRQKRQSLDKSLDDGDISPPRKSKKE----VPPKDVRRAGLMTAEEVKEDIRKIKEDERLKFAAQDPSMIGKGAKAVFRDK-QGKRISEEDM---KKAKEDTKPKEIHIEWGKGLVQKREAEARLHELEAEKSKPFARTRDDPELDTMLKNRIRWGDPMAHLVKRNDTDLLLEDLGDNEKMKESGFIVPQNIPSHSWLKRGVDPPPNRYGIKPGRHWDGVDRSNGFEKDMFKLKNEKQATEQEAYLWSVSDM 574          
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy Swiss-Prot
Match: CWC26_CRYNJ (Pre-mRNA-splicing factor CWC26 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC26 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.099e-10
Identity = 43/117 (36.75%), Postives = 56/117 (47.86%), Query Frame = 1
Query: 1534 FARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884
              R++DD  ++  +K+  RW DP A  + KK+           +  +   +  P       W       APNR+GI PG  WDGVDRSNGFEKK F   N +   E E   WSV DM
Sbjct:  239 VGRSKDDVRMNKEMKEEERWNDPAAAFLTKKK----------KKGPRRPKYEGP-------W-------APNRFGIAPGFRWDGVDRSNGFEKKYFQAQNTRARREYEHNQWSVEDM 331          
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy Swiss-Prot
Match: CWC26_CRYNB (Pre-mRNA-splicing factor CWC26 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CWC26 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.099e-10
Identity = 43/117 (36.75%), Postives = 56/117 (47.86%), Query Frame = 1
Query: 1534 FARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884
              R++DD  ++  +K+  RW DP A  + KK+           +  +   +  P       W       APNR+GI PG  WDGVDRSNGFEKK F   N +   E E   WSV DM
Sbjct:  239 VGRSKDDVRMNKEMKEEERWNDPAAAFLTKKK----------KKGPRRPKYEGP-------W-------APNRFGIAPGFRWDGVDRSNGFEKKYFQAQNTRARREYEHNQWSVEDM 331          
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy Swiss-Prot
Match: CWC26_DEBHA (Pre-mRNA-splicing factor CWC26 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CWC26 PE=3 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 6.358e-9
Identity = 38/115 (33.04%), Postives = 56/115 (48.70%), Query Frame = 1
Query: 1516 LEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREA 1860
            L+++K F+ +  D E + ++K + R+ DP+     +KQ     K      +M  +  V PQ                NR+ IR G  WDG+DRSNGFE  +  K NE   T+REA
Sbjct:  161 LDQNKSFSVSTRDSEYNELMKSKQRFDDPLQSFSSQKQTVATSK----TGKMYYNKGVSPQ----------------NRFNIRAGFFWDGIDRSNGFEDLIVRKRNEVSYTKREA 255          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V7AN32_PHAVU1.627e-14552.75Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
M4EYH8_BRARP1.731e-14553.10Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A0A0LTH5_CUCSA5.225e-14351.69Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
M0U661_MUSAM3.374e-13650.26Uncharacterized protein OS=Musa acuminata subsp. m... [more]
J3MQV4_ORYBR9.333e-13650.25Uncharacterized protein OS=Oryza brachyantha GN=OB... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CWC26_CRYNJ2.099e-1036.75Pre-mRNA-splicing factor CWC26 OS=Cryptococcus neo... [more]
CWC26_CRYNB2.099e-1036.75Pre-mRNA-splicing factor CWC26 OS=Cryptococcus neo... [more]
CWC26_DEBHA6.358e-933.04Pre-mRNA-splicing factor CWC26 OS=Debaryomyces han... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2..29
NoneNo IPR availablePANTHERPTHR31809FAMILY NOT NAMEDcoord: 1..191
coord: 208..592
IPR018609Bud13PFAMPF09736Bud13coord: 416..575
e-value: 4.9E-41
score: 140.4

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005846 ID=g.arboreum_cottongen_reftransV1_0005846; Name=g.arboreum_cottongen_reftransV1_0005846; organism=Gossypium arboreum; type=contig; length=2091bp
CTTTTCTTCCCCTAATTTATCCCTCTCGTCTTCCTCCGGTTCCCGACCCA
AGTCCTCCCTTGCCTTCCAAGTTTCCGATCGAAGAAGAAATTAAATAAGG
GGCAGCCAATGGCGAGTTCTTTGAAAGAATACCTAAAAAGATACGAGACC
AAAAACGAAGAAGAGGAGCAGAAGAAGAAAAGGAAGAAAAAGAAGAAAAC
TAAACCCGAATCATCAGGTGTTCTAGTGGTGGATGAAGATCCAGTGTGGC
AGAAACCTGTTAATCTCGAAGAAGATGAGGGCAATGATTCACCTGATGAG
AAGCCACTAGTGGATGAAGATATAGAAGTAAAAAGAATGAAAAGGCTAGA
GCAGATTAGGTTGAGGAGGGGCTACAATGCCATTGCCGAAGATGGTAGTG
GTTGGGTCTCGCTTTCTCCTAAACACGCTAATACAGTGGATCCTAATTCT
GATATTTCCCCTCCTCGTAGGCAGCGGACACGAAATGACACACCTTCTCC
AGAACCTGGGTTGAGGCACTCAAACTCTGAAATAGAAGCTAAGGATTTGT
CACCTCCGAGAAAACCACGTTCCCCTGGTTTGAAATCTGATTTGTCACCG
CCAAGGAGAAGTAGGGCTCATAATGAGACAACATTAACAAGAGAAGATTC
TGATTTGTCACCTCCTAGCAGGAGGCCAGCTCGGGCTGGTTCACCAGAAC
CTCGACTTAAGGCTTCTAGAGGTGGTACTGATTTATCTCCTCCTTGGAAG
CGGAGGGTTAGGAATGGCACACCCTCACCAGAACCTTTAGTAAACAGAGC
AGATGGTACTGATTTATCTCCTCCTAGGAAACATAGGGTTCGGAATGACA
CACCTTCACCAGAACCTTTAGTAAACCGAACAGATGGTACTGATTTATCT
CCTCCAAGGAAACGGAGGGTTCGGAATGACACACCTTCACCAGAACCTTT
AGCAAACAGAGCAGGTGCTGATCTGTCACCACCTCGGAAACGAAGGGCGA
GAAATGATACACCTTCACCAAAACGGAGGGTGAAGCCTTTGAGAGAAGGT
GCTGATAGTGATATGTCACCTCCACAGCAAAGGTCAAGACGCCGACATAC
ACAATCACCTGAGCCTGATATGTCCCCACCTAGACAATCTCATGCCCAAA
CATCTGAGCTTGTTCATGATTCGGATCTCTCCCCTCCAAGGAAAAGTAGG
AGGGAATCAACTGGTCCTGCTTCTTTGAAACAGCAATCCAAAACTGGTTT
AATTTCTGGCAGTGATATTCGAGAAGAAATTTCAAAAACGAAGAAGGATG
ATTGGTTAAGGTTTAAGGAGATGGATCCATCTGTAAGCGGACGAGGTGCT
GAGCCTGTATTTCGTGATAAGACAAAAGGGGAGCGCATATCAAAAGAAGA
GTACCTTAAGTCAAAACGAAAAGGAGGAGAAGAAAAGCCCAAGGAGAAAG
AGTTGGAATGGGGCAAAGGCTTAGCGCAAAAACGTGAAGCTGAGACTAGG
TTGCAAGAATTAGAACTCGAGAAGAGTAAACCATTTGCTCGAACAAGGGA
TGACCCAGAGCTCGACAATATGTTGAAGGATCGACTAAGATGGGGTGATC
CTATGGCTCATTTGGTCAAGAAAAAACAACCTGAGCTGGTTCTTAAAGAC
CTAGGGGATGCTGAGAGAATGAAAGAGTCGGGGTTCGTAGTTCCTCAAGA
TATTCCCCCGCATAGTTGGATAGTAAGAAAACTAGATGCTGCACCAAATC
GTTATGGTATAAGACCAGGAAGACATTGGGACGGAGTCGATCGTAGTAAT
GGTTTTGAGAAGAAAATGTTCACCAAATTAAACGAGAAACGGGCAACGGA
AAGGGAGGCGTATCTCTGGTCTGTATCCGACATGTGATTCAACACTCCAC
AGCAGACTTTTTAAGTGAGAAATTAAGTATGCTGAAATTGAGAAATTATT
TGCTTCATGCTTTTGTGCCAATTTTAAATTATAACAAATCAATGGTTTTG
ATCCATGATAATTGACTCAGTGAGTCTTGACTGGTGTATTATCATTTCAA
ATCAATTTTCATCAACTTTTGGGTGTCAATTTTATAGGTTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR018609Bud13