g.arboreum_cottongen_reftransV1_0005846, g.arboreum_cottongen_reftransV1_0005846 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: V4L1M3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10007193mg PE=4 SV=1) HSP 1 Score: 477.248 bits (1227), Expect = 1.522e-156 Identity = 321/573 (56.02%), Postives = 386/573 (67.36%), Query Frame = 1 Query: 211 SSGVLVVDEDPVWQKPVNLEEDEG-NDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNSDISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPRSPGLKSDLSP-PRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEP--LVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGT----DLSPPRKRR-VRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPLRE-GADSDMSPPQQRSRRRHTQSPEPDMSPPRQS--HAQTSELVHDS---DLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 + GVLVVDEDPVWQK V+ EE++ +DS +E+P+VDEDIEVKRM+RLE+I+ RR NAIAEDGSGWV+L P N DPNSDISPPRR RTRND+PSPEPG R S S+ D+SPPR+ K +P P +R H K +DL+PP KR+ RN +PSPEP V + DLSPPR+ V PSPE R+D DLSPPR++R +R SP R DLSPPR+RR + +P P R KP + G++SD+SPP RR S + D+SP R++ ++S+ V S D SPPR+ RRES + K+Q KTGLISG DI E K K D+ LRFK MD ++G+ AE VFRDK G+RI+KEEYL+SK+K EKPKE +LEWGKGLAQKREAE R+QELELEK KPFARTRDDPELD M+K+R+RWGDPMAHLVKKKQ E L DLGD E+MKESGFV+PQ IP HSWI R L+ A NRYGI+PGRHWDGVDRSNG E+ M + NEK+ATEREAYLWSVSDM Sbjct: 52 AKGVLVVDEDPVWQKQVDPEEEKNEDDSAEERPMVDEDIEVKRMRRLEEIKARRAQNAIAEDGSGWVTLPP---NREDPNSDISPPRRHRTRNDSPSPEPGHRRSVSDRVETDMSPPRR-----RKRHYTPSPEPNRKH----------------------------AKPVTSDSDLTPPRKRKARNDSPSPEPEDKVPKNLSEDLSPPRRRHVH--PPSPESSRKRSDSIELDGDLSPPRRKRDIRG---SPVLDVKRESNDLSPPRRRRYHSPSPEPGR--KPSKSFGSNSDLSPP----RRSVKGSRDSDLSPQRKTVDSRRSSDNVSRSSNFDSSPPRRPRRESPPHQTSKEQRKTGLISGKDIGSEYRKKKADEQLRFKNMDSELTGQNAEAVFRDKITGKRITKEEYLQSKQKKVVEKPKEIKLEWGKGLAQKREAEARIQELELEKEKPFARTRDDPELDQMMKERVRWGDPMAHLVKKKQHETSLVDLGDDEKMKESGFVIPQTIPKHSWITRGLEPAFNRYGIKPGRHWDGVDRSNGHERDMLKRTNEKKATEREAYLWSVSDM 577
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: D7KGN5_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_680924 PE=4 SV=1) HSP 1 Score: 468.389 bits (1204), Expect = 2.417e-153 Identity = 306/565 (54.16%), Postives = 383/565 (67.79%), Query Frame = 1 Query: 217 GVLVVDEDPVWQKPVNLEEDEG-NDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNSDISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPRSPGLKSDLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEP--LVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGT----DLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPLREGADSDMSPPQQRSRRRHTQSPEPDMSPPRQSH--AQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 GVLVVDEDPVWQKPV+ EEDE NDS +E+PLVDEDI+VKRM+RLE+I+ RR +NAIAEDGSGWV+L N D SDISPPRRQRTRND+PSPEPG PR+ + +++D+SPPRR + HN + K +D+SPP KR+ RN +PSPEP V + DLSPPR+ V +PS E R+D DLSPPR++R + +P + + DLSPPR+RR + +P P RR +++D+SPP++ + ++ + D+SP R++ ++S + D SPPR+ RRES P + K+Q KTGLISG DI E K K+D+ LRFK MD ++G+ AE VFRDK G+RISKEEYLKSK+K EKPKE +LEWGKGLAQKREAE RLQELELEK KPFARTRDDPELD MLK+R+R+GDPMAHLVKKK+ E L DLGD E MK+SGF++PQ +P HSW+ R L+AA NRYGI+PGRHWDGVDRSNG EKK+ NE++ATE EAYLWSV+DM Sbjct: 42 GVLVVDEDPVWQKPVDPEEDENENDSAEERPLVDEDIDVKRMRRLEEIKARRAHNAIAEDGSGWVTLP---LNREDTQSDISPPRRQRTRNDSPSPEPG---------------PRRSVADRVETDMSPPRRRKRHNSPS-----------------PEPNRKHTKPVSLDSDMSPPRKRKARNDSPSPEPEAKVPKNLSEDLSPPRRRHVH--SPSRESSRYRSDSVELDDDLSPPRRKRDLHGSPVSD--VKKKSNDLSPPRRRRYHSPSPEPGRRPSKFI-ASNADLSPPRRNMNMKGSR--DSDLSPQRKTADPRRSSNI----DSSPPRRPRRESPPPQTSKEQRKTGLISGKDIGSEYRKKKEDEQLRFKNMDSELTGQNAEAVFRDKITGKRISKEEYLKSKQKKVIEKPKEIKLEWGKGLAQKREAEARLQELELEKEKPFARTRDDPELDQMLKERVRFGDPMAHLVKKKRHEATLVDLGDDEEMKKSGFIIPQSVPKHSWLTRGLEAATNRYGIKPGRHWDGVDRSNGTEKKLIKTTNERKATEIEAYLWSVADM 560
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: Q9C6S8_ARATH (AT1G31870 protein OS=Arabidopsis thaliana GN=F5M6.12 PE=1 SV=1) HSP 1 Score: 467.233 bits (1201), Expect = 8.699e-153 Identity = 304/566 (53.71%), Postives = 379/566 (66.96%), Query Frame = 1 Query: 217 GVLVVDEDPVWQKPVNLEEDEGNDSPDEK-PLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNSDISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPRSPGLKSDLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGT----DLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPLREGADSDMSPPQQRSRRRHTQSPEPDMSPPRQSH--AQTSELVHDS---DLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 GVLVVDEDPVWQK V+ EEDE D E+ PLVDEDIEVKRM+RLE+I+ RR +NAIAEDGSGWV+L N D S+ISPPRRQRTRND+PSPEPG PR+ + + +D+SPPRR + HN + K +D+SPP KR+ RN +PSPEP DLSPPR+ V +PS E R+D DLSPPR++R + +P + + DLSPPR+RR + +P P RR G+++D+SPP + + +Q + D+SP R++ ++SE V S D SPPR+ RR+S+ P K+Q KTGLISG DI E K K+D+ LRFK MD ++G+ AE VFRDK G+RISKEEYLKSK+K EKPKE +LEWGKGLAQKREAE RLQELELEK KPFARTRDDPELD M+K+R+R+GDPMAHLVKK++ E L DLGD E MK+SGF++PQ +P HSW+ R+L+AA NRYGI+PGRHWDGVDRSNG EK + K NE++ATE EAYLWSV+DM Sbjct: 39 GVLVVDEDPVWQKQVDPEEDENEDDSAEETPLVDEDIEVKRMRRLEEIKARRAHNAIAEDGSGWVTLP---LNREDTQSNISPPRRQRTRNDSPSPEPG---------------PRRSVADRVDTDMSPPRRRKRHNSPS-----------------PEPNRKHTKPVSLDSDMSPPRKRKARNDSPSPEPEAKYL-SEDLSPPRRRHVH--SPSRESSRKRSDSVELDDDLSPPRRKRDLHGSPVSD--VKKKSNDLSPPRRRRYHSPSPEPARRSSK-SFGSNADLSPPGRNINMKDSQ--DSDLSPQRKAADLRRSSENVSRSSNFDSSPPRRPRRDSSPPQISKEQRKTGLISGKDIGSEYRKKKEDEKLRFKNMDSELTGQNAEAVFRDKITGKRISKEEYLKSKQKKVIEKPKEIKLEWGKGLAQKREAEARLQELELEKDKPFARTRDDPELDQMMKERVRFGDPMAHLVKKRKYETTLVDLGDDEEMKKSGFIIPQSVPKHSWLTRRLEAASNRYGIKPGRHWDGVDRSNGTEKDLIKKTNERKATEIEAYLWSVADM 561
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: I1KIA7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 459.914 bits (1182), Expect = 6.074e-150 Identity = 313/601 (52.08%), Postives = 379/601 (63.06%), Query Frame = 1 Query: 211 SSGVLVVDEDPVWQKPVNL-EEDEGNDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNSDISPPRR----------QRTRNDTPSPEPGL-------------RHSNSEIEA------KDLSPPRK-----PRSPGLKS--------DLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGTDLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPLREGADSDMSPPQQRSRRRHTQSPEPDMSPPRQSHAQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 ++G+LVVDEDP WQKP++L EE+ N S +EKPL+DEDIEVKRMKRLEQ+R RR Y+AI+EDGSGWVSLS N ++ +D+SPPR+ Q RNDTPSP+ G RH + +A DLSPPRK PR PGL + LSPPRR R ET+ D+SPP RR R+ +PS E + +R+ +DLSPPRK++ + + L +R DLSPPR R R+D+PS + L + +DLSPPRK + K + SD+S RH +SP P + S D DLSPPRK+ +E + PA KTGLISG DIR+EI + K+DD LRFK+MDPS+SGRGAEPV+RDK KG RISKEEYLKSK+K E+ + + LAQKREAE RL+ELELEK KPFARTRDDPELD MLK+RLRWGDPMAHLVKKK PE VL +LG+ E+MKESGFV+PQDIP HSW+ R LDAAPNRYGIRPGRHWDGVDRSNGFEK MF + NEK+A +REAYLWSVSDM Sbjct: 37 ATGLLVVDEDPTWQKPIDLGEENNDNSSDEEKPLIDEDIEVKRMKRLEQVRARRPYHAISEDGSGWVSLSSNSENPINSINDMSPPRKRKGADLSPHQQLKRNDTPSPDYGTSDLQDISPPRRRGRHDSPSQDALHGSVASDLSPPRKIQKNAPR-PGLSNISHSRSPQHLSPPRRGRHDYETSDL-----------------------------QDISPP--RRGRHDSPS-EDVSHRSVASDLSPPRKNQKKVERLGLSDLSHRHSPQDLSPPR--RGRHDSPSRDALHGSSVSDLSPPRKIQ------------KNVARLGSSDLS--------RH-RSPSPSV-------KVVSHPSLDRDLSPPRKNPKELSNPAG-----KTGLISGKDIRDEIDRKKRDDMLRFKQMDPSISGRGAEPVYRDKVKGVRISKEEYLKSKQKVEEKPKEIEIEWGKG-LAQKREAEARLKELELEKEKPFARTRDDPELDKMLKERLRWGDPMAHLVKKKYPEPVLPNLGENEKMKESGFVIPQDIPNHSWLKRGLDAAPNRYGIRPGRHWDGVDRSNGFEKDMFKRTNEKQARDREAYLWSVSDM 568
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: A0A0B2R530_GLYSO (BUD13 like OS=Glycine soja GN=glysoja_031044 PE=4 SV=1) HSP 1 Score: 459.914 bits (1182), Expect = 6.074e-150 Identity = 313/601 (52.08%), Postives = 379/601 (63.06%), Query Frame = 1 Query: 211 SSGVLVVDEDPVWQKPVNL-EEDEGNDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNSDISPPRR----------QRTRNDTPSPEPGL-------------RHSNSEIEA------KDLSPPRK-----PRSPGLKS--------DLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGTDLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPLREGADSDMSPPQQRSRRRHTQSPEPDMSPPRQSHAQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 ++G+LVVDEDP WQKP++L EE+ N S +EKPL+DEDIEVKRMKRLEQ+R RR Y+AI+EDGSGWVSLS N ++ +D+SPPR+ Q RNDTPSP+ G RH + +A DLSPPRK PR PGL + LSPPRR R ET+ D+SPP RR R+ +PS E + +R+ +DLSPPRK++ + + L +R DLSPPR R R+D+PS + L + +DLSPPRK + K + SD+S RH +SP P + S D DLSPPRK+ +E + PA KTGLISG DIR+EI + K+DD LRFK+MDPS+SGRGAEPV+RDK KG RISKEEYLKSK+K E+ + + LAQKREAE RL+ELELEK KPFARTRDDPELD MLK+RLRWGDPMAHLVKKK PE VL +LG+ E+MKESGFV+PQDIP HSW+ R LDAAPNRYGIRPGRHWDGVDRSNGFEK MF + NEK+A +REAYLWSVSDM Sbjct: 37 ATGLLVVDEDPTWQKPIDLGEENNDNSSDEEKPLIDEDIEVKRMKRLEQVRARRPYHAISEDGSGWVSLSSNSENPINSINDMSPPRKRKGADLSPHQQLKRNDTPSPDYGTSDLQDISPPRRRGRHDSPSQDALHGSVASDLSPPRKIQKNAPR-PGLSNISHSRSPQHLSPPRRGRHDYETSDL-----------------------------QDISPP--RRGRHDSPS-EDVSHRSVASDLSPPRKNQKKVERLGLSDLSHRHSPQDLSPPR--RGRHDSPSRDALHGSSVSDLSPPRKIQ------------KNVARLGSSDLS--------RH-RSPSPSV-------KVVSHPSLDRDLSPPRKNPKELSNPAG-----KTGLISGKDIRDEIDRKKRDDMLRFKQMDPSISGRGAEPVYRDKVKGVRISKEEYLKSKQKVEEKPKEIEIEWGKG-LAQKREAEARLKELELEKEKPFARTRDDPELDKMLKERLRWGDPMAHLVKKKYPEPVLPNLGENEKMKESGFVIPQDIPNHSWLKRGLDAAPNRYGIRPGRHWDGVDRSNGFEKDMFKRTNEKQARDREAYLWSVSDM 568
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: A0A072TNX1_MEDTR (Pre-mRNA-splicing factor of RES complex protein OS=Medicago truncatula GN=MTR_8g030840 PE=4 SV=1) HSP 1 Score: 456.447 bits (1173), Expect = 5.239e-149 Identity = 287/572 (50.17%), Postives = 366/572 (63.99%), Query Frame = 1 Query: 214 SGVLVVDEDPVWQKPVNL-EEDEGNDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNSDISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDLSPPR--------------KPRSPGLKSDLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGTDLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPLREGADSDMSPPQQRSRRRHTQSPEPDMSPPRQSHAQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 +G+LVVDEDP WQKPV+L EE++ S +EKP+VDEDIEVKRMKRLEQ++ RR Y+ I+EDGSGWV LS N+D SPPR+QR RNDTPSPEP + S S DLSP S G SDLSPPR+ R + T + RE ++ +D+SPP ++ V N +P D+SPPR+ + + +D DLSPPR+ R+ D+PS + L + +DLSPPR+R+ A S +S RS + S DSDLSPPRK+ +E + PAS+ ++ KTGLISG D+REEI + +KDD LR K+MDP +SGRGAEPV+RD KG RI+KEEY+ ++ +EKPKE ++EWGKGLAQKREAE +L+ELE+EK KPFARTRDDPELD ++K+R+RWGDPMAHLVKKK PE VL +LGD+++M+ESGFV+PQDIP HSW+ R L+AAPNRYGIRPGRHWDGVDRSNGFEK +F + NE++A ++EAYLWSVSDM Sbjct: 36 TGLLVVDEDPTWQKPVDLGEENDDKSSDEEKPIVDEDIEVKRMKRLEQLKARRAYHDISEDGSGWVPLS---------NNDTSPPRKQRVRNDTPSPEPEVNPSTSNRTGADLSPSCLQLKRYDTPSPEQDSQHSGGGNSDLSPPRKHRDQSVTDVAREPRSS-----------------RSKFEDSDMSPPRRKHVSNSSP------------DISPPRRRSHQTSGSNGRKKYETSDLEDLSPPRRGRL--DSPSQDTLHGQVSSDLSPPRRRQ---------------HSVARSSLSDVSHRSVK------------------AVSHQSLDSDLSPPRKNPKELSIPASVNER-KTGLISGKDMREEIDRKRKDDLLRLKQMDPVISGRGAEPVYRD-NKGGRITKEEYV-KSKQKVDEKPKEIKIEWGKGLAQKREAEAKLKELEVEKEKPFARTRDDPELDKLMKERVRWGDPMAHLVKKKYPEPVLPNLGDSDKMRESGFVIPQDIPNHSWLKRGLEAAPNRYGIRPGRHWDGVDRSNGFEKALFKRTNERQAKDKEAYLWSVSDM 531
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: A0A078HAW5_BRANA (BnaA05g16610D protein OS=Brassica napus GN=BnaA05g16610D PE=4 SV=1) HSP 1 Score: 454.521 bits (1168), Expect = 5.731e-148 Identity = 309/580 (53.28%), Postives = 378/580 (65.17%), Query Frame = 1 Query: 214 SGVLVVDEDPVWQKPVN-LEEDEGNDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDP--NSDISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPR-----SP----------GLKSDLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDG----TDLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRR-VKPLREGADSDMSPPQQRSRRRHTQSPEPDMSPPRQSHAQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 +GVLVVDEDPVWQK V+ EED NDS +E+P+VDEDIEVKRM+RLE+I+ RR NAIAEDGSGWVSLS DP + DISPPRR RTRND+PSPEPG S + D+SPPR+ + SP L SDL+PPR+ RA N++ +P PE ++ G DLSPPRK RV SPE R+D +DLSPPR+++ S N+ DLSPPR+RR + +P P RR K LR ++SD+SPP++ + ++ + D+SP R++ +++S D SPPR+ RRES P + K+Q KTGLISG DI E K K+D+ LRFK MD ++G+ AE VFRDK G+RISKEEYL+SK+K EKPKE +LEWG+GLAQKR+AE RLQELELEK KPFARTRDDPELD M+K+R+RWGDPMAHLVKKKQ E L DLGD E MK+SGFV+PQ IP HSWI R L+AAPNRYGI+PGRHWDGVDRS G EK F K +EK+ATE EAYLWSV+DM Sbjct: 41 TGVLVVDEDPVWQKQVDPHEEDNENDSAEERPVVDEDIEVKRMRRLEEIKARRAQNAIAEDGSGWVSLS------SDPQRSDDISPPRRHRTRNDSPSPEPG--GSRGSLPETDMSPPRRRKRHYTPSPEPNRLHAKPVSLDSDLTPPRKRRARNDSP---------------------------------------------SPEPEDTAPKSLGEDLSPPRKRRVH--PVSPERSGKRSDSLELDSDLSPPRRKK-----DSLVSDVNKRSNDLSPPRRRRYHSPSPEPDRRPSKSLR--SNSDLSPPRRSVSVKGSR--DSDLSPQRKTVSRSSNF----DSSPPRRPRRESPPPQTSKEQRKTGLISGKDIGSEYRKKKQDEQLRFKNMDSELTGQNAEAVFRDKITGKRISKEEYLQSKQKKVIEKPKEIKLEWGQGLAQKRDAEARLQELELEKDKPFARTRDDPELDQMMKERVRWGDPMAHLVKKKQYEAPLMDLGDNEEMKKSGFVIPQSIPKHSWITRGLEAAPNRYGIKPGRHWDGVDRSTGHEKDRFKKTSEKKATESEAYLWSVADM 552
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: A0A0D3CGW9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 453.366 bits (1165), Expect = 1.906e-147 Identity = 302/580 (52.07%), Postives = 372/580 (64.14%), Query Frame = 1 Query: 214 SGVLVVDEDPVWQKPVN--LEEDEGNDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNS-DISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPR-----SP----------GLKSDLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGT----DLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPLRE-GADSDMSPPQQRSRRRHTQSPEPDMSPPRQSHAQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 +GVLVVDEDPVWQK V+ E+D NDS +E+P+VDEDIEVKRM+RLE+I+ RR NAIAEDGSGWVSLS D S DISPPRRQRTRND+PSPEPG R S E D+SPPR+ + SP L SDL+PPR+ RA N++ +P PE ++ G DLSPP V SPE R+D DLSPPR+++ D+ + + N+ DLSPPR+RR + +P P R KP + G++SD+SPP++ + ++ + D+SP R++ +++S P R+S T K+Q KTGLISG DI E K K+D+ LRFK MD ++G+ AE VFRDK G+RI+KEEYL+SK+K EKPKE +LEWG+GLAQKR+AE RLQELELEK KPFARTRDDPELD M+K+R+RWGDPMAHLVKKKQ E L DLGD E MK+SGFV+PQ IP HSWI R L+AAPNRYGI+PGRHWDGVDRS G EK F K +EK+ATEREAYLWSVSDM Sbjct: 41 TGVLVVDEDPVWQKQVDPQEEQDNENDSAEERPVVDEDIEVKRMRRLEEIKARRAQNAIAEDGSGWVSLSSDQGGCDDQRSDDISPPRRQRTRNDSPSPEPGPRGSLPET---DMSPPRRRKRHYTPSPEPNRQHAKPVSLDSDLTPPRKRRARNDSP---------------------------------------------SPEPEDTAPKSLGEDLSPPPNRCVH--PVSPERSGKRSDSLELDGDLSPPRRKK---DSLASD--VNKKSNDLSPPRRRRYHSPSPEPGR--KPSKSLGSNSDLSPPRRSVSVKGSR--DSDLSPQRKTVSRSSNFGSSPPRRPRRESPPPQTS----KEQRKTGLISGKDIGSEYRKKKEDEQLRFKNMDSELTGQNAEAVFRDKITGKRITKEEYLQSKQKKVIEKPKEIKLEWGQGLAQKRDAEARLQELELEKDKPFARTRDDPELDQMMKERVRWGDPMAHLVKKKQYEAPLMDLGDNEEMKKSGFVIPQSIPKHSWITRGLEAAPNRYGIKPGRHWDGVDRSTGHEKDRFKKTSEKKATEREAYLWSVSDM 557
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: A0A078GXR9_BRANA (BnaC05g29220D protein OS=Brassica napus GN=BnaC05g29220D PE=4 SV=1) HSP 1 Score: 454.521 bits (1168), Expect = 2.040e-147 Identity = 303/580 (52.24%), Postives = 372/580 (64.14%), Query Frame = 1 Query: 214 SGVLVVDEDPVWQKPVN--LEEDEGNDSPDEKPLVDEDIEVKRMKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNS-DISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPR-----SP----------GLKSDLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLKASRGGTDLSPPWKRRVRNGTPSPEPLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGT----DLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPLRE-GADSDMSPPQQRSRRRHTQSPEPDMSPPRQSHAQTSELVHDSDLSPPRKSRRESTGPASLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXXXXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 +GVLVVDEDPVWQK V+ EED NDS +E+P+VDEDIEVKRM+RLE+I+ RR NAIAEDGSGWVSLS D S DISPPRRQRTRND+PSPEPG R S E D+SPPR+ + SP L SDL+PPR+ RA N++ +P PE ++ G DLSPP V SPE R+D DLSPPR+++ D+ + + N+ DLSPPR+RR + +P P R KP + G++SD+SPP++ + ++ + D+SP R++ +++S P R+S T K+Q KTGLISG DI E K K+D+ LRFK MD ++G+ AE VFRDK G+RI+KEEYL+SK+K EKPKE +LEWG+GLAQKR+AE RLQELELEK KPFARTRDDPELD M+K+R+RWGDPMAHLVKKKQ E L DLGD E MK+SGFV+PQ IP HSWI R L+AAPNRYGI+PGRHWDGVDRS G EK F K +EK+ATEREAYLWSVSDM Sbjct: 83 TGVLVVDEDPVWQKQVDPQEEEDNENDSAEERPVVDEDIEVKRMRRLEEIKARRAQNAIAEDGSGWVSLSSDQGGCDDQRSDDISPPRRQRTRNDSPSPEPGPRGSLPET---DMSPPRRRKRHYTPSPEPNRQHAKPVSLDSDLTPPRKRRARNDSP---------------------------------------------SPEPEDTAPKSLGEDLSPPPNRCVH--PVSPERSGKRSDSLELDGDLSPPRRKK---DSLASD--VNKKSNDLSPPRRRRYHSPSPEPGR--KPSKSLGSNSDLSPPRRSVSVKGSR--DSDLSPQRKTVSRSSNFGSSPPRRPRRESPPPQTS----KEQRKTGLISGKDIGSEYRKKKEDEQLRFKNMDSELTGQNAEAVFRDKITGKRITKEEYLQSKQKKVIEKPKEIKLEWGQGLAQKRDAEARLQELELEKDKPFARTRDDPELDQMMKERVRWGDPMAHLVKKKQYEAPLMDLGDNEEMKKSGFVIPQSIPKHSWITRGLEAAPNRYGIKPGRHWDGVDRSTGHEKDRFKKTSEKKATEREAYLWSVSDM 599
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Match: K4BFR7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g033950.2 PE=4 SV=1) HSP 1 Score: 446.047 bits (1146), Expect = 1.317e-145 Identity = 296/539 (54.92%), Postives = 362/539 (67.16%), Query Frame = 1 Query: 337 MKRLEQIRLRRGYNAIAEDGSGWVSLSPKHANTVDPNSDISPPRRQRTRNDTPSPEPGLRHSNSEIEAKDLSPPRKPR----SPGLKS--------DLSPPRRSRAHNETTLTXXXXXXXXXXXXXXXXXXXXXXLK-ASRGGTDLSPPWKRRVRNGTPSPE--PLVNRADGTDLSPPRKHRVRNDTPSPEPLVNRTDGTDLSPPRKRRVRNDTPSPEPLANRAGADLSPPRKRRARNDTPSPKRRVKPLREGADSDMSPPQQRSRRRHTQSPEPDMSPPRQ-SHAQT-SELVHDSDLSPPRKSRRESTGPA-----SLKQQSKTGLISGSDIREEISKTKKDDWLRFKEMDPSVSGRGAEPVFRDKTKGERISKEEYLXXXXXXXXXXXXXXXXXX-XXXLAQKREAETRLQELELEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 MKRLEQIR RR + +++EDGSGWVS+S + + D SD+SP R+ RND+PSPEP L S+ + DLSPPRK R +P +S DLSPPR+ A N+T T SPEP+LK +S DLSPP KRRVRN TP PE PL R D+SPPR+ R RNDTP + R+ TD+SPPR+R+ RNDTPSPEP A R ADLSPPR+R ++ V+ L SD+S D+SPPR+ S AQ S +DLSP RK + ++ A + KQ KTGL+SG DI+EEI +TKK+DW+RF+EMDP VSGRGAEPV+RDK G+R+SKEE+LKSK+K E++ ++ GKGLAQKRE E RLQELE EK KPFAR+RDDPELD MLK+R+RWGDPMAHLVKKK + +L D G E+MK+SGF++PQDIP HSWI R LDAAPNRYGIRPGRHWDGVDRS G+EK++F + NEK+ATEREAYLWSVSDM Sbjct: 1 MKRLEQIRARRPFGSVSEDGSGWVSVS---STSNDQISDLSPTWRRPGRNDSPSPEPQLNLSSP---SADLSPPRKSRARNDTPSPESEQPRTQEGDLSPPRKRSARNDTQRT------------RILTPSPEPQLKPSSAKDADLSPPRKRRVRNDTPEPEVKPLSTR--DADISPPRRQRARNDTPESDMKSLRSRDTDISPPRRRKTRNDTPSPEPKA-RPSADLSPPRRR---------QKYVQSL-----SDIS----------------DVSPPRRGSRAQGDSRADQGTDLSPLRKKKAQNVLEARPDSSTTKQGPKTGLVSGKDIKEEIDRTKKEDWMRFQEMDPLVSGRGAEPVYRDKITGQRMSKEEFLKSKKKKDEKEKPKEIKLEWGKGLAQKREMEVRLQELENEKDKPFARSRDDPELDTMLKERVRWGDPMAHLVKKKL-DPILPDFGANEKMKDSGFIIPQDIPSHSWIKRGLDAAPNRYGIRPGRHWDGVDRSTGYEKELFKRTNEKQATEREAYLWSVSDM 487
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy Swiss-Prot
Match: CWC26_CRYNJ (Pre-mRNA-splicing factor CWC26 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC26 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.099e-10 Identity = 43/117 (36.75%), Postives = 56/117 (47.86%), Query Frame = 1 Query: 1534 FARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 R++DD ++ +K+ RW DP A + KK+ + + + P W APNR+GI PG WDGVDRSNGFEKK F N + E E WSV DM Sbjct: 239 VGRSKDDVRMNKEMKEEERWNDPAAAFLTKKK----------KKGPRRPKYEGP-------W-------APNRFGIAPGFRWDGVDRSNGFEKKYFQAQNTRARREYEHNQWSVEDM 331
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy Swiss-Prot
Match: CWC26_CRYNB (Pre-mRNA-splicing factor CWC26 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CWC26 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.099e-10 Identity = 43/117 (36.75%), Postives = 56/117 (47.86%), Query Frame = 1 Query: 1534 FARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREAYLWSVSDM 1884 R++DD ++ +K+ RW DP A + KK+ + + + P W APNR+GI PG WDGVDRSNGFEKK F N + E E WSV DM Sbjct: 239 VGRSKDDVRMNKEMKEEERWNDPAAAFLTKKK----------KKGPRRPKYEGP-------W-------APNRFGIAPGFRWDGVDRSNGFEKKYFQAQNTRARREYEHNQWSVEDM 331
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy Swiss-Prot
Match: CWC26_DEBHA (Pre-mRNA-splicing factor CWC26 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CWC26 PE=3 SV=2) HSP 1 Score: 61.2326 bits (147), Expect = 6.358e-9 Identity = 38/115 (33.04%), Postives = 56/115 (48.70%), Query Frame = 1 Query: 1516 LEKSKPFARTRDDPELDNMLKDRLRWGDPMAHLVKKKQPELVLKDLGDAERMKESGFVVPQDIPPHSWIVRKLDAAPNRYGIRPGRHWDGVDRSNGFEKKMFTKLNEKRATEREA 1860 L+++K F+ + D E + ++K + R+ DP+ +KQ K +M + V PQ NR+ IR G WDG+DRSNGFE + K NE T+REA Sbjct: 161 LDQNKSFSVSTRDSEYNELMKSKQRFDDPLQSFSSQKQTVATSK----TGKMYYNKGVSPQ----------------NRFNIRAGFFWDGIDRSNGFEDLIVRKRNEVSYTKREA 255 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0005846 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 13
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0005846 ID=g.arboreum_cottongen_reftransV1_0005846; Name=g.arboreum_cottongen_reftransV1_0005846; organism=Gossypium arboreum; type=contig; length=2091bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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