g.arboreum_cottongen_reftransV1_0004526, g.arboreum_cottongen_reftransV1_0004526 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: G7K6S4_MEDTR (Transcription initiation factor TFIID protein, putative OS=Medicago truncatula GN=MTR_5g026660 PE=4 SV=2) HSP 1 Score: 378.252 bits (970), Expect = 4.867e-107 Identity = 297/532 (55.83%), Postives = 368/532 (69.17%), Query Frame = 1 Query: 4 IAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARG-QRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGM-PSTGPLTKVKI-LGDNVK--LFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-STDRPSDKLTSGGTQSSDHPVTSD----PENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESL 1569 IA QTRWHRIA IRKLSSEQAASGVKVDPTTI KYARG QRMSFLQLQQQTREKCQEIWDRQ+QSLS ++G++NESDSE NSDLDSFAGDLENLLDAEEFE+GEE N+ K DK D VK LKMRRR AQ EEEI+DEAAEAAELCRLLMDD D+ +KKKKK K + L LQP+ ++ ++VK QI + Q NGS E+ + D ++ E+ K S S K+ +KKN + P + P K+K+ +G+ +K +FKEKK SRETFVCGACGQLGHMRTNK+CPKYGEDPE Q+E+T++EK GKS+ +PS QSQ ++ KK I+K TK+A VE N+ +PLKFKC ST++ SD+ QSSD PVTSD ++ +AK+SKIII N+ K D+ Q ES K +VIR D RGQ +SHK I I+PPA ++R++ HK V+ KR K+V+DL+ S G T E+RKTK+IVEL++FEKH KQE++ Sbjct: 1140 IANQTRWHRIATIRKLSSEQAASGVKVDPTTIGKYARGGQRMSFLQLQQQTREKCQEIWDRQVQSLSTLNGDDNESDSEGNSDLDSFAGDLENLLDAEEFEDGEEATNDLKRDKGDGVKALKMRRRTTLAQTEEEIQDEAAEAAELCRLLMDD-DEAYRKKKKKGKVMVNPRRLVPKLQPKFVFDNTEQVK-------QITNTLQLNGSNHFKEDALTDHREEENLSAKKSKSVKVNKVKKNDISPISVPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDPEAQLESTDMEKPTGKSSFGDPSSQSQHQLPSKKSISKIVTKLAPVE---------NSTKIPLKFKCSSTEKSSDRPAVETLQSSDKPVTSDKPVISDSETAKSAKISKIIIPNKVKSDDTQAESLKHAIVIRPPTDPGRGQVDSHKFPIKIRPPAEIDRER--SHKKIVI------------------KRTKDVVDLELDSPGGNTGFEHRKTKRIVELANFEKHRKQETM 1634 HSP 2 Score: 191.045 bits (484), Expect = 5.453e-46 Identity = 93/138 (67.39%), Postives = 116/138 (84.06%), Query Frame = 1 Query: 1888 GAKRKPVELGRYGAEYVPPTKRRRGG--EVGLANILERIVETL-RDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 G +R VELG++G +++PPTKRRRGG EVGLANILE IV+ + +D ++S LFLKPV KK APDYL+I++ PMDLS IR++VR MEYK++E+FRHDVWQI +NAH YNDGRNPGIPP+AD LLE CDYLL+E+ DSL Sbjct: 1753 GKRRSVVELGKFGEDFMPPTKRRRGGGGEVGLANILESIVDAIVKDRYDLSNLFLKPVPKKLAPDYLDIIERPMDLSKIRERVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPVADMLLEYCDYLLNENDDSL 1890
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: A0A0A0KA05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G357030 PE=4 SV=1) HSP 1 Score: 377.481 bits (968), Expect = 8.513e-107 Identity = 287/525 (54.67%), Postives = 356/525 (67.81%), Query Frame = 1 Query: 4 IAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGMPSTGPLT-KVKILGDNVKLFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKCST-DRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVE-PHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESL 1569 IAK TRWHRIAMIR+LSSEQAASGV+VDPTTISKYARGQRMSFLQLQ+QTREKCQEIW+RQIQSLSA DG ENESDSE NSDLDSFAG L E E E + +K D VKGLKMRRRP Q EEEIEDE AEAAELCRLLMDDE ++ ++KKK V +A L+ G Q E ++ + ++ Q + +Y EN +++ K++ES + SGKLK MKKN + K+KI GD VK FKEKKS+RE+FVCG CGQ GHMRTNK+CPKYGED ET E T+ +K K +++PS QS K + KK+ K+ K EA EGEKS+ K LP+KFKCS+ DR SD L+ Q+SD PV SD E G KS KV+KI S + + +++Q ESHK +VIR D + E+HK SIVI+PP NM+R++ E P + + +IR + +K+Q KK+IIKRPKEV DLD+ + +G EYRKTK+IVELSS EKH + S+ Sbjct: 1140 IAKLTRWHRIAMIRRLSSEQAASGVQVDPTTISKYARGQRMSFLQLQRQTREKCQEIWERQIQSLSASDGAENESDSEGNSDLDSFAG-DLENLLDAEEFEDEVDTFEIRHEKTDGVKGLKMRRRPSIVQTEEEIEDEVAEAAELCRLLMDDEAER--RRKKKKNKVMGEAVLSTGFQASFFHEKPEQT-------RHLISIAQPDVTYISKEN-IREQKEVESISNRKEKSGKLKPMKKNYSSEMSLINKKLKISGDKVKNFKEKKSARESFVCGKCGQFGHMRTNKNCPKYGEDLETP-ETTDQDKVSIKLNAMDPSNQSHQKAVVKKVTPKAIAKSFTTEAFEGEKST--AKVLPVKFKCSSADRLSDNLSPALPQTSDLPVNSDNETG-KSIVKVNKITFSKK-RTEDIQFESHKPSIVIR-PPDAKKVSLEAHKPSIVIRPPTNMDRERTEFPRRSATIIRSAVETEKEQLHKKLIIKRPKEV-DLDRSAYDGSVDMEYRKTKRIVELSSLEKHTRHGSM 1646 HSP 2 Score: 218.779 bits (556), Expect = 8.076e-55 Identity = 98/133 (73.68%), Postives = 116/133 (87.22%), Query Frame = 1 Query: 1894 KRKPVELGRYGAEYVPPTKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 KRKP+ELGR+ E TKRRRGGEVGL+NILERIVETL+D ++SYLF+KPVSKKEAPDYL+I++ PMDLSTIR+KVRR+EYK ++EFR+DVWQI YNAH+YNDGRNPGIPPLADQLL LCD LL + + L Sbjct: 1755 KRKPIELGRHIPEQASSTKRRRGGEVGLSNILERIVETLKDRFDISYLFIKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRNDVWQIMYNAHLYNDGRNPGIPPLADQLLMLCDNLLKQCDEDL 1887
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: M4F349_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra035499 PE=4 SV=1) HSP 1 Score: 373.244 bits (957), Expect = 2.609e-105 Identity = 282/546 (51.65%), Postives = 367/546 (67.22%), Query Frame = 1 Query: 1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKD--IESRIFKGSVSGKLKGMKKNGMPSTGPLTKVKILGDNVKLFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMK-KKLITKSATKIAVVEASEGEKSSTNTKALPLKFKCS--TDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHK-LPVVIRHQVDTDRGQAESHKKSI-------------VIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESLRLME 1581 +IAKQTRWHRIAMIRKLSSEQAASGVKVDPTTI KYARGQRMSFLQ+QQQ REKCQEIWDRQ+ SLSA DG+ENES++EANSDLDSFAG L E E +N +K DK D VKGLKMRRRP + + +EEIEDEA E AELCRLLM DED +KKKKKK KAV E G +P IG + + V+K + I K + +TQ + S+ +NE+ VKDT++ ++S I K + K K +K NG S GPL KVKIL +N+K+FKEKKS+RE FVCGACGQ GHMRTNKHCP+Y E+ + Q E ++EK+ GK ++ E SGQ+++K +K K KSA K+ V +G+ S++ T LPLKF+ SD L S SS+ SD + G K+ +K+SK+ IS++AKP E +VES + LP R +RG++ESHK + +++P +M+RDQ E +P +VI +++QPQKK++IKR KE+ D D S E E RKTK++ EL+ F+ +Q+S R+ E Sbjct: 1128 IIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQMQQQAREKCQEIWDRQLSSLSAYDGDENESENEANSDLDSFAG-DLENLLDAEEGGEGEESNISKNDKLDGVKGLKMRRRPSQVETDEEIEDEATEYAELCRLLMQDED--QKKKKKKIKAVGEGMGSFPPPRPSIGFQIAEPVRKATFIDKNPI-ATQPDASFLVNESTVKDTRNWQVDSPILK---TPKGKQVKDNGN-SLGPLKKVKILNENLKVFKEKKSARENFVCGACGQYGHMRTNKHCPRYRENTDPQPEGVDMEKSVGKPSTSELSGQAKIKPIKSSKAAPKSAIKVTVDATPKGDSSTSKTGGLPLKFRYGIPAGAMSDTLGSEAPGSSEQAAVSDIDTGTKTTSKISKLKISSKAKPKESKVESDRPLPTYSR-----ERGESESHKPCVSGNQAASSRHTISILQPSLSMDRDQAESRRPHLVI--RPPTEREQPQKKLVIKRSKEITDHDMSSLEESPRFESRKTKRMAELTGFQ---RQQSFRVAE 1655 HSP 2 Score: 194.126 bits (492), Expect = 4.787e-47 Identity = 91/124 (73.39%), Postives = 104/124 (83.87%), Query Frame = 1 Query: 1924 GAEYVPPTKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIY-NDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 GA+Y P KRR+ GEVGLANILE IV+TLR EVS LFLKPVSKK APDY +IVK PMDLSTIRDKVR++EY+N+E+FRHDVWQI NAH+Y N+GRNPGI PLADQLLE+CDYLL + D L Sbjct: 1761 GADYAPQPKRRKKGEVGLANILETIVDTLRLKEEVSGLFLKPVSKKGAPDYFDIVKRPMDLSTIRDKVRKIEYRNREQFRHDVWQIQLNAHLYNNNGRNPGIQPLADQLLEICDYLLEDYGDQL 1884
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: V7CJ31_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G127400g PE=4 SV=1) HSP 1 Score: 372.859 bits (956), Expect = 2.984e-105 Identity = 301/538 (55.95%), Postives = 368/538 (68.40%), Query Frame = 1 Query: 1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGM-PSTGPLTKVKI-LGDNVK--LFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQ-LKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-STDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIR---------HQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESL 1569 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQ+QSLSAV+ +ENESDSE NSDLDSFAGDLENLLDAEEFEEGEEG N+ K DK D VKGLKMRRRP AQAEEEIEDEAAEAAELCRLLMDD D+ +KKKKK K E+ L +Q + +S + VK + ++Q +G+ P+ E+ + D ++ E+ K S S K KKN + P + P K+K+ +G+ +K +FKEKK SRETFVCGACGQ GHMRTNK+CPKYGED ETQ+E+ ++EK+ GK ++ S SQ K KK I+KS TKI V+ N+ +PLKFKC S+++ SDK + Q+SD PVTSD E AKS AKV+KIII + KPD+ Q ES K VVIR D RGQ + +K I I+PP ++++Q HK V+ KR KEVI ++ S G T ++RKTK+IVELS+FEK KQ+++ Sbjct: 1142 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNADENESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDD-DEADRKKKKKTKVTGEETRLVSKMQSKFAFDSSELVKP-------LTNTSQLDGNNPLKEDVITDLREEENFGAKKSKSLKANKAKKNDITPVSLPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQPGHMRTNKNCPKYGEDLETQLESADMEKSSGK--PIDHSSHSQPTKAPSKKSISKSTTKITPVD---------NSAKIPLKFKCGSSEKSSDKPVTETLQNSDKPVTSDSET-AKS-AKVNKIIIPKKVKPDDTQAESRKHAVVIRPPTESSRGPPPTDAGRGQVDYNKLPIKIRPPTEIDKEQ--SHKKIVI------------------KRTKEVIGVELDSPGGNTGLQHRKTKRIVELSNFEKQKKQDTV 1638 HSP 2 Score: 199.904 bits (507), Expect = 7.880e-49 Identity = 99/138 (71.74%), Postives = 117/138 (84.78%), Query Frame = 1 Query: 1888 GAKRKPVELGRYGAEYVPPTKRRRGG--EVGLANILERIVETL-RDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292 G +R ELG+ A+Y+PPTKRRRGG EVGLANILE IV+T+ +D E+SYLF+KPVSKKEAPDYL+I+ PMDLS IR++VR MEYK++E+FRHDVWQI YNAH YNDGRNPGIPPLAD LLE CDYLL+E+ DSL Sbjct: 1748 GKRRSVSELGKLSADYMPPTKRRRGGGGEVGLANILESIVDTIVKDRYELSYLFVKPVSKKEAPDYLDIIDTPMDLSRIRERVRNMEYKSREDFRHDVWQITYNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSL 1885
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: V4SAV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004140mg PE=4 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 1.106e-104 Identity = 290/528 (54.92%), Postives = 357/528 (67.61%), Query Frame = 1 Query: 1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGMPSTGPLTKVKILGDNVKLFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKCST-DRPSDKLTSGGTQSSDHPVTSD-PENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDT-DRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXX--------------------XEVIDLDQLSQEGGTYPEYRKT 1515 +IAKQTRWHRIAMIRKLSSEQAAS V+VDPTTISKYARGQRM FLQLQQQTR K QSLSA D +E SDSE + FAGDLENLLDAEEFEE E + K DK + VKGLKMRR P + QAEEEIED+AAE AELCRLLMDD++ + KKKKKK KA E GL+ Q G+E ++R+KK + K I + Q NGS+ NE +KD K+ ES I K ++SG ++ MKKNG+ G KVKI+ +FKEKKSSR TFVCGACGQ GHMRTNK+CP+Y +PETQ+E +++K+ G T + KKKLI+KSATKIA++EA EGEKSS TK +P+KFKCS+ D+ DK TQSSD TSD E KS KV++I+ISN+ +P+E QVESHK +VIR VDT D+ QAESHK SI+I+PPAN +R+QVE HKPS++IRP D++ + K++IDLD++SQ+G + EYRKT Sbjct: 836 MIAKQTRWHRIAMIRKLSSEQAASAVQVDPTTISKYARGQRMPFLQLQQQTRGK--------FQSLSAADDDEIGSDSEHSDLDS-FAGDLENLLDAEEFEEEESNYDT-KHDKVEGVKGLKMRRCPIQVQAEEEIEDDAAEVAELCRLLMDDDEAKLKKKKKKTKAPVE-GGLSLA-QSISGLEIVERLKKANKPAKHIAITVQPNGSHAANEQ-IKDPKEEESLIAKRNLSGTVQAMKKNGISPVG--KKVKIV-----MFKEKKSSRGTFVCGACGQHGHMRTNKNCPRYRAEPETQLETADMDKSWGNLTLWT---LQLKSLKKKKLISKSATKIALIEAPEGEKSSLKTKVVPVKFKCSSADKLPDKFPVASTQSSDQLSTSDVVETANKSVGKVNRIVISNKPRPEETQVESHKPSIVIRPPVDTVDKSQAESHKPSIIIRPPANTDREQVESHKPSILIRPVTTTDRELVESHKPSIVIRPPADKEREPPQKKIIIKRPKDIIDLDRVSQDGSPH-EYRKT 1339
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: SPT7_YEAST (Transcriptional activator SPT7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPT7 PE=1 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 7.793e-9 Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1 Query: 1945 TKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYN 2205 T R G+ L E++V LR+ TE S FL VSK+EAP+Y I+K MDL+T+ K++ +Y +++EF D+ I N YN Sbjct: 435 TSDERIGQEELYEACEKVVLELRNYTEHSTPFLNKVSKREAPNYHQIIKKSMDLNTVLKKLKSFQYDSKQEFVDDIMLIWKNCLTYN 521
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: BAZ1A_HUMAN (Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens GN=BAZ1A PE=1 SV=2) HSP 1 Score: 61.6178 bits (148), Expect = 4.132e-8 Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 1 Query: 1903 PVELGRYGAEYVPPTKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYN 2205 PV LGR + R+GG L+ + +VE +R + S+ FLK VSK + PDY +I+K P+ L+ IR+KV + EYK EF D+ + N YN Sbjct: 1418 PVTLGRRSSG-------RQGGVHELSAFEQLVVELVRHDD--SWPFLKLVSKIQVPDYYDIIKKPIALNIIREKVNKCEYKLASEFIDDIELMFSNCFEYN 1509
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: GCN5_SCHPO (Histone acetyltransferase gcn5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gcn5 PE=1 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 4.426e-8 Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 1984 ILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDG 2211 +LE + ++ N S+ F++PVSK++ PDY +++HPMDLST+ ++R +Y++ EEF D I N YND Sbjct: 351 VLEMLFTEMQ-NHPSSWPFMQPVSKEDVPDYYEVIEHPMDLSTMEFRLRNNQYESVEEFIRDAKYIFDNCRSYNDS 425
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: Y0777_DICDI (Bromodomain-containing protein DDB_G0280777 OS=Dictyostelium discoideum GN=DDB_G0280777 PE=3 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 7.741e-8 Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 1 Query: 1987 LERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYN 2205 L+ ++ L+D ++ S+ FL V EAP+Y I+K PMDLS + K++++EY+++ EF+ D+ I N IYN Sbjct: 315 LDTVLNQLKDYSDHSFPFLTKVRPSEAPNYYEIIKKPMDLSLMTKKLKKLEYQSKFEFQLDLNLIFTNCRIYN 387
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: BRD1_HUMAN (Bromodomain-containing protein 1 OS=Homo sapiens GN=BRD1 PE=1 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 8.086e-8 Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1 Query: 1975 LANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYN 2205 L +L +++ L+D + + +F +PVS KE PDYL+ +KHPMD +T+R ++ YKN EF D I N YN Sbjct: 567 LTVLLRSVLDQLQDK-DPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYN 642
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: BAZ1A_MOUSE (Bromodomain adjacent to zinc finger domain protein 1A OS=Mus musculus GN=Baz1a PE=1 SV=3) HSP 1 Score: 60.077 bits (144), Expect = 1.274e-7 Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 1 Query: 1888 GAKRKPVELGRYGAEYVPPTKR---RRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYN 2205 G KR+ E + VP +R R+GG L+ + +VE +R + S+ FLK VSK + PDY +I+K P+ L+ IR+KV + EYK EF D+ + N YN Sbjct: 1407 GRKRQSTE-----SSPVPLNRRSSGRQGGVHELSAFEQLVVELVRHDD--SWPFLKLVSKIQVPDYYDIIKKPIALNIIREKVNKCEYKLASEFIDDIELMFSNCFEYN 1508
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: GCN5_CANGA (Histone acetyltransferase GCN5 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GCN5 PE=3 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 1.883e-7 Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1 Query: 2017 NTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQL 2247 N ++ FL+PV+K+E PDY +K PMDLST+ K+ +Y+ EEF +D + N +YN G N A++L Sbjct: 452 NHAAAWPFLRPVNKEEVPDYYEFIKEPMDLSTMELKLENNKYEKMEEFIYDARLVCNNCRLYN-GENTSYYKYANRL 527
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: GCN5_YEAST (Histone acetyltransferase GCN5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN5 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 2.445e-7 Identity = 33/99 (33.33%), Postives = 54/99 (54.55%), Query Frame = 1 Query: 1951 RRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQL 2247 +R + + NIL + N ++ FL+PV+K+E PDY + +K PMDLST+ K+ +Y+ E+F +D + N +YN G N A++L Sbjct: 328 KRGPHDAAIQNILTEL-----QNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYN-GENTSYYKYANRL 420
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: BPTF_HUMAN (Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF PE=1 SV=3) HSP 1 Score: 58.5362 bits (140), Expect = 3.918e-7 Identity = 28/78 (35.90%), Postives = 51/78 (65.38%), Query Frame = 1 Query: 1987 LERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNP 2220 L+R++ +L+ + ++++ FL+PV +APDY ++K PMDL+T+ ++V+R Y+ EF D+ +I N YN +P Sbjct: 2936 LKRVLRSLQAH-KMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSP 3012
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: BAZ1B_MOUSE (Tyrosine-protein kinase BAZ1B OS=Mus musculus GN=Baz1b PE=1 SV=2) HSP 1 Score: 56.9954 bits (136), Expect = 8.771e-7 Identity = 24/59 (40.68%), Postives = 40/59 (67.80%), Query Frame = 1 Query: 2029 SYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYN 2205 S+ F +PV++ EA DY ++++HPMD TI++K Y++ +EF D+ Q+ NA +YN Sbjct: 1357 SWPFREPVTRDEAEDYYDVIEHPMDFQTIQNKCSCGNYRSVQEFLTDMKQVFANAELYN 1415 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 21
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0004526 ID=g.arboreum_cottongen_reftransV1_0004526; Name=g.arboreum_cottongen_reftransV1_0004526; organism=Gossypium arboreum; type=contig; length=3025bpback to top |