g.arboreum_cottongen_reftransV1_0004526, g.arboreum_cottongen_reftransV1_0004526 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0004526
Unique Nameg.arboreum_cottongen_reftransV1_0004526
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length3025
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0004526:1..3025 .
Chr9:52496243..52501317 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: G7K6S4_MEDTR (Transcription initiation factor TFIID protein, putative OS=Medicago truncatula GN=MTR_5g026660 PE=4 SV=2)

HSP 1 Score: 378.252 bits (970), Expect = 4.867e-107
Identity = 297/532 (55.83%), Postives = 368/532 (69.17%), Query Frame = 1
Query:    4 IAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARG-QRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGM-PSTGPLTKVKI-LGDNVK--LFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-STDRPSDKLTSGGTQSSDHPVTSD----PENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESL 1569
            IA QTRWHRIA IRKLSSEQAASGVKVDPTTI KYARG QRMSFLQLQQQTREKCQEIWDRQ+QSLS ++G++NESDSE NSDLDSFAGDLENLLDAEEFE+GEE  N+ K DK D VK LKMRRR   AQ EEEI+DEAAEAAELCRLLMDD D+  +KKKKK K +     L   LQP+   ++ ++VK       QI  + Q NGS    E+ + D ++ E+   K S S K+  +KKN + P + P  K+K+ +G+ +K  +FKEKK SRETFVCGACGQLGHMRTNK+CPKYGEDPE Q+E+T++EK  GKS+  +PS QSQ ++  KK I+K  TK+A VE         N+  +PLKFKC ST++ SD+      QSSD PVTSD     ++    +AK+SKIII N+ K D+ Q ES K  +VIR   D  RGQ +SHK  I I+PPA ++R++   HK  V+                  KR K+V+DL+  S  G T  E+RKTK+IVEL++FEKH KQE++
Sbjct: 1140 IANQTRWHRIATIRKLSSEQAASGVKVDPTTIGKYARGGQRMSFLQLQQQTREKCQEIWDRQVQSLSTLNGDDNESDSEGNSDLDSFAGDLENLLDAEEFEDGEEATNDLKRDKGDGVKALKMRRRTTLAQTEEEIQDEAAEAAELCRLLMDD-DEAYRKKKKKGKVMVNPRRLVPKLQPKFVFDNTEQVK-------QITNTLQLNGSNHFKEDALTDHREEENLSAKKSKSVKVNKVKKNDISPISVPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDPEAQLESTDMEKPTGKSSFGDPSSQSQHQLPSKKSISKIVTKLAPVE---------NSTKIPLKFKCSSTEKSSDRPAVETLQSSDKPVTSDKPVISDSETAKSAKISKIIIPNKVKSDDTQAESLKHAIVIRPPTDPGRGQVDSHKFPIKIRPPAEIDRER--SHKKIVI------------------KRTKDVVDLELDSPGGNTGFEHRKTKRIVELANFEKHRKQETM 1634          

HSP 2 Score: 191.045 bits (484), Expect = 5.453e-46
Identity = 93/138 (67.39%), Postives = 116/138 (84.06%), Query Frame = 1
Query: 1888 GAKRKPVELGRYGAEYVPPTKRRRGG--EVGLANILERIVETL-RDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292
            G +R  VELG++G +++PPTKRRRGG  EVGLANILE IV+ + +D  ++S LFLKPV KK APDYL+I++ PMDLS IR++VR MEYK++E+FRHDVWQI +NAH YNDGRNPGIPP+AD LLE CDYLL+E+ DSL
Sbjct: 1753 GKRRSVVELGKFGEDFMPPTKRRRGGGGEVGLANILESIVDAIVKDRYDLSNLFLKPVPKKLAPDYLDIIERPMDLSKIRERVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPVADMLLEYCDYLLNENDDSL 1890          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: A0A0A0KA05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G357030 PE=4 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 8.513e-107
Identity = 287/525 (54.67%), Postives = 356/525 (67.81%), Query Frame = 1
Query:    4 IAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGMPSTGPLT-KVKILGDNVKLFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKCST-DRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVE-PHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESL 1569
            IAK TRWHRIAMIR+LSSEQAASGV+VDPTTISKYARGQRMSFLQLQ+QTREKCQEIW+RQIQSLSA DG ENESDSE NSDLDSFAG     L   E  E E      + +K D VKGLKMRRRP   Q EEEIEDE AEAAELCRLLMDDE ++  ++KKK   V  +A L+ G Q     E  ++        + ++   Q + +Y   EN +++ K++ES   +   SGKLK MKKN       +  K+KI GD VK FKEKKS+RE+FVCG CGQ GHMRTNK+CPKYGED ET  E T+ +K   K  +++PS QS  K + KK+  K+  K    EA EGEKS+   K LP+KFKCS+ DR SD L+    Q+SD PV SD E G KS  KV+KI  S + + +++Q ESHK  +VIR   D  +   E+HK SIVI+PP NM+R++ E P + + +IR   + +K+Q  KK+IIKRPKEV DLD+ + +G    EYRKTK+IVELSS EKH +  S+
Sbjct: 1140 IAKLTRWHRIAMIRRLSSEQAASGVQVDPTTISKYARGQRMSFLQLQRQTREKCQEIWERQIQSLSASDGAENESDSEGNSDLDSFAG-DLENLLDAEEFEDEVDTFEIRHEKTDGVKGLKMRRRPSIVQTEEEIEDEVAEAAELCRLLMDDEAER--RRKKKKNKVMGEAVLSTGFQASFFHEKPEQT-------RHLISIAQPDVTYISKEN-IREQKEVESISNRKEKSGKLKPMKKNYSSEMSLINKKLKISGDKVKNFKEKKSARESFVCGKCGQFGHMRTNKNCPKYGEDLETP-ETTDQDKVSIKLNAMDPSNQSHQKAVVKKVTPKAIAKSFTTEAFEGEKST--AKVLPVKFKCSSADRLSDNLSPALPQTSDLPVNSDNETG-KSIVKVNKITFSKK-RTEDIQFESHKPSIVIR-PPDAKKVSLEAHKPSIVIRPPTNMDRERTEFPRRSATIIRSAVETEKEQLHKKLIIKRPKEV-DLDRSAYDGSVDMEYRKTKRIVELSSLEKHTRHGSM 1646          

HSP 2 Score: 218.779 bits (556), Expect = 8.076e-55
Identity = 98/133 (73.68%), Postives = 116/133 (87.22%), Query Frame = 1
Query: 1894 KRKPVELGRYGAEYVPPTKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292
            KRKP+ELGR+  E    TKRRRGGEVGL+NILERIVETL+D  ++SYLF+KPVSKKEAPDYL+I++ PMDLSTIR+KVRR+EYK ++EFR+DVWQI YNAH+YNDGRNPGIPPLADQLL LCD LL +  + L
Sbjct: 1755 KRKPIELGRHIPEQASSTKRRRGGEVGLSNILERIVETLKDRFDISYLFIKPVSKKEAPDYLDIIERPMDLSTIREKVRRLEYKTRDEFRNDVWQIMYNAHLYNDGRNPGIPPLADQLLMLCDNLLKQCDEDL 1887          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: M4F349_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra035499 PE=4 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 2.609e-105
Identity = 282/546 (51.65%), Postives = 367/546 (67.22%), Query Frame = 1
Query:    1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKD--IESRIFKGSVSGKLKGMKKNGMPSTGPLTKVKILGDNVKLFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMK-KKLITKSATKIAVVEASEGEKSSTNTKALPLKFKCS--TDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHK-LPVVIRHQVDTDRGQAESHKKSI-------------VIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESLRLME 1581
            +IAKQTRWHRIAMIRKLSSEQAASGVKVDPTTI KYARGQRMSFLQ+QQQ REKCQEIWDRQ+ SLSA DG+ENES++EANSDLDSFAG     L   E     E +N +K DK D VKGLKMRRRP + + +EEIEDEA E AELCRLLM DED  +KKKKKK KAV E  G     +P IG +  + V+K + I K  + +TQ + S+ +NE+ VKDT++  ++S I K   + K K +K NG  S GPL KVKIL +N+K+FKEKKS+RE FVCGACGQ GHMRTNKHCP+Y E+ + Q E  ++EK+ GK ++ E SGQ+++K +K  K   KSA K+ V    +G+ S++ T  LPLKF+        SD L S    SS+    SD + G K+ +K+SK+ IS++AKP E +VES + LP   R     +RG++ESHK  +             +++P  +M+RDQ E  +P +VI      +++QPQKK++IKR KE+ D D  S E     E RKTK++ EL+ F+   +Q+S R+ E
Sbjct: 1128 IIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTIGKYARGQRMSFLQMQQQAREKCQEIWDRQLSSLSAYDGDENESENEANSDLDSFAG-DLENLLDAEEGGEGEESNISKNDKLDGVKGLKMRRRPSQVETDEEIEDEATEYAELCRLLMQDED--QKKKKKKIKAVGEGMGSFPPPRPSIGFQIAEPVRKATFIDKNPI-ATQPDASFLVNESTVKDTRNWQVDSPILK---TPKGKQVKDNGN-SLGPLKKVKILNENLKVFKEKKSARENFVCGACGQYGHMRTNKHCPRYRENTDPQPEGVDMEKSVGKPSTSELSGQAKIKPIKSSKAAPKSAIKVTVDATPKGDSSTSKTGGLPLKFRYGIPAGAMSDTLGSEAPGSSEQAAVSDIDTGTKTTSKISKLKISSKAKPKESKVESDRPLPTYSR-----ERGESESHKPCVSGNQAASSRHTISILQPSLSMDRDQAESRRPHLVI--RPPTEREQPQKKLVIKRSKEITDHDMSSLEESPRFESRKTKRMAELTGFQ---RQQSFRVAE 1655          

HSP 2 Score: 194.126 bits (492), Expect = 4.787e-47
Identity = 91/124 (73.39%), Postives = 104/124 (83.87%), Query Frame = 1
Query: 1924 GAEYVPPTKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIY-NDGRNPGIPPLADQLLELCDYLLHESSDSL 2292
            GA+Y P  KRR+ GEVGLANILE IV+TLR   EVS LFLKPVSKK APDY +IVK PMDLSTIRDKVR++EY+N+E+FRHDVWQI  NAH+Y N+GRNPGI PLADQLLE+CDYLL +  D L
Sbjct: 1761 GADYAPQPKRRKKGEVGLANILETIVDTLRLKEEVSGLFLKPVSKKGAPDYFDIVKRPMDLSTIRDKVRKIEYRNREQFRHDVWQIQLNAHLYNNNGRNPGIQPLADQLLEICDYLLEDYGDQL 1884          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: V7CJ31_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G127400g PE=4 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 2.984e-105
Identity = 301/538 (55.95%), Postives = 368/538 (68.40%), Query Frame = 1
Query:    1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGM-PSTGPLTKVKI-LGDNVK--LFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQ-LKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-STDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIR---------HQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESL 1569
            VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQ+QSLSAV+ +ENESDSE NSDLDSFAGDLENLLDAEEFEEGEEG N+ K DK D VKGLKMRRRP  AQAEEEIEDEAAEAAELCRLLMDD D+  +KKKKK K   E+  L   +Q +   +S + VK        +  ++Q +G+ P+ E+ + D ++ E+   K S S K    KKN + P + P  K+K+ +G+ +K  +FKEKK SRETFVCGACGQ GHMRTNK+CPKYGED ETQ+E+ ++EK+ GK   ++ S  SQ  K   KK I+KS TKI  V+         N+  +PLKFKC S+++ SDK  +   Q+SD PVTSD E  AKS AKV+KIII  + KPD+ Q ES K  VVIR            D  RGQ + +K  I I+PP  ++++Q   HK  V+                  KR KEVI ++  S  G T  ++RKTK+IVELS+FEK  KQ+++
Sbjct: 1142 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNADENESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDD-DEADRKKKKKTKVTGEETRLVSKMQSKFAFDSSELVKP-------LTNTSQLDGNNPLKEDVITDLREEENFGAKKSKSLKANKAKKNDITPVSLPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQPGHMRTNKNCPKYGEDLETQLESADMEKSSGK--PIDHSSHSQPTKAPSKKSISKSTTKITPVD---------NSAKIPLKFKCGSSEKSSDKPVTETLQNSDKPVTSDSET-AKS-AKVNKIIIPKKVKPDDTQAESRKHAVVIRPPTESSRGPPPTDAGRGQVDYNKLPIKIRPPTEIDKEQ--SHKKIVI------------------KRTKEVIGVELDSPGGNTGLQHRKTKRIVELSNFEKQKKQDTV 1638          

HSP 2 Score: 199.904 bits (507), Expect = 7.880e-49
Identity = 99/138 (71.74%), Postives = 117/138 (84.78%), Query Frame = 1
Query: 1888 GAKRKPVELGRYGAEYVPPTKRRRGG--EVGLANILERIVETL-RDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292
            G +R   ELG+  A+Y+PPTKRRRGG  EVGLANILE IV+T+ +D  E+SYLF+KPVSKKEAPDYL+I+  PMDLS IR++VR MEYK++E+FRHDVWQI YNAH YNDGRNPGIPPLAD LLE CDYLL+E+ DSL
Sbjct: 1748 GKRRSVSELGKLSADYMPPTKRRRGGGGEVGLANILESIVDTIVKDRYELSYLFVKPVSKKEAPDYLDIIDTPMDLSRIRERVRNMEYKSREDFRHDVWQITYNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSL 1885          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: V4SAV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004140mg PE=4 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 1.106e-104
Identity = 290/528 (54.92%), Postives = 357/528 (67.61%), Query Frame = 1
Query:    1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGMPSTGPLTKVKILGDNVKLFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKCST-DRPSDKLTSGGTQSSDHPVTSD-PENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDT-DRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXX--------------------XEVIDLDQLSQEGGTYPEYRKT 1515
            +IAKQTRWHRIAMIRKLSSEQAAS V+VDPTTISKYARGQRM FLQLQQQTR K         QSLSA D +E  SDSE +     FAGDLENLLDAEEFEE E   +  K DK + VKGLKMRR P + QAEEEIED+AAE AELCRLLMDD++ + KKKKKK KA  E  GL+   Q   G+E ++R+KK +   K I  + Q NGS+  NE  +KD K+ ES I K ++SG ++ MKKNG+   G   KVKI+     +FKEKKSSR TFVCGACGQ GHMRTNK+CP+Y  +PETQ+E  +++K+ G  T           + KKKLI+KSATKIA++EA EGEKSS  TK +P+KFKCS+ D+  DK     TQSSD   TSD  E   KS  KV++I+ISN+ +P+E QVESHK  +VIR  VDT D+ QAESHK SI+I+PPAN +R+QVE HKPS++IRP    D++  +                            K++IDLD++SQ+G  + EYRKT
Sbjct:  836 MIAKQTRWHRIAMIRKLSSEQAASAVQVDPTTISKYARGQRMPFLQLQQQTRGK--------FQSLSAADDDEIGSDSEHSDLDS-FAGDLENLLDAEEFEEEESNYDT-KHDKVEGVKGLKMRRCPIQVQAEEEIEDDAAEVAELCRLLMDDDEAKLKKKKKKTKAPVE-GGLSLA-QSISGLEIVERLKKANKPAKHIAITVQPNGSHAANEQ-IKDPKEEESLIAKRNLSGTVQAMKKNGISPVG--KKVKIV-----MFKEKKSSRGTFVCGACGQHGHMRTNKNCPRYRAEPETQLETADMDKSWGNLTLWT---LQLKSLKKKKLISKSATKIALIEAPEGEKSSLKTKVVPVKFKCSSADKLPDKFPVASTQSSDQLSTSDVVETANKSVGKVNRIVISNKPRPEETQVESHKPSIVIRPPVDTVDKSQAESHKPSIIIRPPANTDREQVESHKPSILIRPVTTTDRELVESHKPSIVIRPPADKEREPPQKKIIIKRPKDIIDLDRVSQDGSPH-EYRKT 1339          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: SPT7_YEAST (Transcriptional activator SPT7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPT7 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 7.793e-9
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 1945 TKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYN 2205
            T   R G+  L    E++V  LR+ TE S  FL  VSK+EAP+Y  I+K  MDL+T+  K++  +Y +++EF  D+  I  N   YN
Sbjct:  435 TSDERIGQEELYEACEKVVLELRNYTEHSTPFLNKVSKREAPNYHQIIKKSMDLNTVLKKLKSFQYDSKQEFVDDIMLIWKNCLTYN 521          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: BAZ1A_HUMAN (Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens GN=BAZ1A PE=1 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 4.132e-8
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 1
Query: 1903 PVELGRYGAEYVPPTKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYN 2205
            PV LGR  +        R+GG   L+   + +VE +R +   S+ FLK VSK + PDY +I+K P+ L+ IR+KV + EYK   EF  D+  +  N   YN
Sbjct: 1418 PVTLGRRSSG-------RQGGVHELSAFEQLVVELVRHDD--SWPFLKLVSKIQVPDYYDIIKKPIALNIIREKVNKCEYKLASEFIDDIELMFSNCFEYN 1509          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: GCN5_SCHPO (Histone acetyltransferase gcn5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gcn5 PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.426e-8
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 1984 ILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDG 2211
            +LE +   ++ N   S+ F++PVSK++ PDY  +++HPMDLST+  ++R  +Y++ EEF  D   I  N   YND 
Sbjct:  351 VLEMLFTEMQ-NHPSSWPFMQPVSKEDVPDYYEVIEHPMDLSTMEFRLRNNQYESVEEFIRDAKYIFDNCRSYNDS 425          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: Y0777_DICDI (Bromodomain-containing protein DDB_G0280777 OS=Dictyostelium discoideum GN=DDB_G0280777 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 7.741e-8
Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 1987 LERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYN 2205
            L+ ++  L+D ++ S+ FL  V   EAP+Y  I+K PMDLS +  K++++EY+++ EF+ D+  I  N  IYN
Sbjct:  315 LDTVLNQLKDYSDHSFPFLTKVRPSEAPNYYEIIKKPMDLSLMTKKLKKLEYQSKFEFQLDLNLIFTNCRIYN 387          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: BRD1_HUMAN (Bromodomain-containing protein 1 OS=Homo sapiens GN=BRD1 PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 8.086e-8
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1
Query: 1975 LANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYN 2205
            L  +L  +++ L+D  + + +F +PVS KE PDYL+ +KHPMD +T+R ++    YKN  EF  D   I  N   YN
Sbjct:  567 LTVLLRSVLDQLQDK-DPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYN 642          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: BAZ1A_MOUSE (Bromodomain adjacent to zinc finger domain protein 1A OS=Mus musculus GN=Baz1a PE=1 SV=3)

HSP 1 Score: 60.077 bits (144), Expect = 1.274e-7
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 1888 GAKRKPVELGRYGAEYVPPTKR---RRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYN 2205
            G KR+  E     +  VP  +R   R+GG   L+   + +VE +R +   S+ FLK VSK + PDY +I+K P+ L+ IR+KV + EYK   EF  D+  +  N   YN
Sbjct: 1407 GRKRQSTE-----SSPVPLNRRSSGRQGGVHELSAFEQLVVELVRHDD--SWPFLKLVSKIQVPDYYDIIKKPIALNIIREKVNKCEYKLASEFIDDIELMFSNCFEYN 1508          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: GCN5_CANGA (Histone acetyltransferase GCN5 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GCN5 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.883e-7
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1
Query: 2017 NTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQL 2247
            N   ++ FL+PV+K+E PDY   +K PMDLST+  K+   +Y+  EEF +D   +  N  +YN G N      A++L
Sbjct:  452 NHAAAWPFLRPVNKEEVPDYYEFIKEPMDLSTMELKLENNKYEKMEEFIYDARLVCNNCRLYN-GENTSYYKYANRL 527          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: GCN5_YEAST (Histone acetyltransferase GCN5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN5 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.445e-7
Identity = 33/99 (33.33%), Postives = 54/99 (54.55%), Query Frame = 1
Query: 1951 RRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQL 2247
            +R   +  + NIL  +      N   ++ FL+PV+K+E PDY + +K PMDLST+  K+   +Y+  E+F +D   +  N  +YN G N      A++L
Sbjct:  328 KRGPHDAAIQNILTEL-----QNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYN-GENTSYYKYANRL 420          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: BPTF_HUMAN (Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF PE=1 SV=3)

HSP 1 Score: 58.5362 bits (140), Expect = 3.918e-7
Identity = 28/78 (35.90%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 1987 LERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNP 2220
            L+R++ +L+ + ++++ FL+PV   +APDY  ++K PMDL+T+ ++V+R  Y+   EF  D+ +I  N   YN   +P
Sbjct: 2936 LKRVLRSLQAH-KMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSP 3012          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: BAZ1B_MOUSE (Tyrosine-protein kinase BAZ1B OS=Mus musculus GN=Baz1b PE=1 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 8.771e-7
Identity = 24/59 (40.68%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 2029 SYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYN 2205
            S+ F +PV++ EA DY ++++HPMD  TI++K     Y++ +EF  D+ Q+  NA +YN
Sbjct: 1357 SWPFREPVTRDEAEDYYDVIEHPMDFQTIQNKCSCGNYRSVQEFLTDMKQVFANAELYN 1415          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
G7K6S4_MEDTR4.867e-10755.83Transcription initiation factor TFIID protein, put... [more]
A0A0A0KA05_CUCSA8.513e-10754.67Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
M4F349_BRARP2.609e-10551.65Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
V7CJ31_PHAVU2.984e-10555.95Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
V4SAV3_9ROSI1.106e-10454.92Uncharacterized protein OS=Citrus clementina GN=CI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
SPT7_YEAST7.793e-940.23Transcriptional activator SPT7 OS=Saccharomyces ce... [more]
BAZ1A_HUMAN4.132e-838.61Bromodomain adjacent to zinc finger domain protein... [more]
GCN5_SCHPO4.426e-839.47Histone acetyltransferase gcn5 OS=Schizosaccharomy... [more]
Y0777_DICDI7.741e-839.73Bromodomain-containing protein DDB_G0280777 OS=Dic... [more]
BRD1_HUMAN8.086e-840.26Bromodomain-containing protein 1 OS=Homo sapiens G... [more]
BAZ1A_MOUSE1.274e-737.61Bromodomain adjacent to zinc finger domain protein... [more]
GCN5_CANGA1.883e-738.96Histone acetyltransferase GCN5 OS=Candida glabrata... [more]
GCN5_YEAST2.445e-733.33Histone acetyltransferase GCN5 OS=Saccharomyces ce... [more]
BPTF_HUMAN3.918e-735.90Nucleosome-remodeling factor subunit BPTF OS=Homo ... [more]
BAZ1B_MOUSE8.771e-740.68Tyrosine-protein kinase BAZ1B OS=Mus musculus GN=B... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 139..159
NoneNo IPR availableCOILSCoilCoilcoord: 117..137
NoneNo IPR availableCOILSCoilCoilcoord: 540..598
NoneNo IPR availablePFAMPF15288zf-CCHC_6coord: 263..281
e-value: 6.4E-5
score: 22.6
NoneNo IPR availablePANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 1..330
NoneNo IPR availablePANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 412..594
NoneNo IPR availablePANTHERPTHR13900:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1-RELATEDcoord: 624..759
NoneNo IPR availablePANTHERPTHR13900:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1-RELATEDcoord: 1..330
NoneNo IPR availablePANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 624..759
NoneNo IPR availablePANTHERPTHR13900:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1-RELATEDcoord: 412..594
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 693..711
score: 26.43
coord: 663..676
score: 31.68
coord: 711..730
score: 26.96
coord: 677..693
score: 54.35
IPR001487BromodomainSMARTSM00297bromo_6coord: 640..750
e-value: 5.8E-23
score: 92.3
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 651..726
e-value: 1.2E-18
score: 66.8
IPR001487BromodomainGENE3D1.20.920.10coord: 637..752
e-value: 6.5E-26
score: 89.9
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 660..730
score: 18.571
IPR001487BromodomainSUPERFAMILY47370Bromodomaincoord: 632..751
IPR018359Bromodomain, conserved sitePROSITEPS00633BROMODOMAIN_1coord: 665..722

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0004526 ID=g.arboreum_cottongen_reftransV1_0004526; Name=g.arboreum_cottongen_reftransV1_0004526; organism=Gossypium arboreum; type=contig; length=3025bp
GTGATTGCAAAACAAACTAGGTGGCATCGTATTGCAATGATACGCAAGCT
CTCAAGTGAGCAAGCTGCATCAGGAGTCAAGGTTGATCCAACAACTATAA
GCAAGTATGCACGGGGACAGCGAATGTCCTTTCTTCAGTTACAACAGCAG
ACCAGAGAAAAATGTCAGGAAATATGGGATCGCCAAATTCAGTCTCTTTC
AGCTGTTGATGGTGAAGAAAATGAAAGTGATTCTGAGGCAAATAGTGATC
TTGATTCCTTTGCTGGCGACCTAGAAAATTTGCTTGATGCAGAGGAATTC
GAAGAAGGGGAAGAAGGTAACAACAATAACAAGGTTGACAAAGCAGATGC
TGTTAAGGGGCTCAAGATGAGAAGACGTCCCTATAAGGCTCAGGCAGAAG
AAGAAATTGAAGATGAGGCTGCTGAAGCTGCTGAATTATGTCGTTTACTC
ATGGATGATGAGGATGACCAAAAGAAGAAAAAAAAGAAGAAAAACAAAGC
TGTTACAGAAGATGCTGGGTTGACTTTCGGCTTACAACCACGCATTGGTG
TTGAGAGTTTACAACGTGTTAAGAAAACAAGCATAATTCCCAAGCAAATT
GTTCGTTCTACTCAATCTAATGGGTCATATCCTATGAATGAGAATTTTGT
CAAGGATACAAAGGATATTGAAAGTAGAATTTTTAAAGGAAGCGTGTCTG
GAAAGTTGAAAGGAATGAAAAAAAATGGTATGCCAAGCACAGGTCCATTA
ACTAAAGTCAAAATATTGGGAGACAATGTCAAGTTGTTCAAGGAGAAGAA
ATCATCGAGAGAAACTTTTGTCTGTGGAGCTTGTGGTCAGCTTGGACACA
TGAGGACCAACAAGCACTGCCCCAAGTATGGAGAAGATCCAGAAACGCAG
GTTGAAGCTACTGAGTTGGAAAAAACTCCTGGGAAATCAACTTCGCTAGA
ACCCTCTGGTCAGTCCCAATTGAAGATGATGAAAAAGAAGCTCATAACTA
AAAGTGCGACAAAGATAGCAGTTGTAGAAGCTTCGGAGGGTGAAAAATCT
AGTACAAACACAAAAGCTCTTCCGTTGAAATTCAAATGCTCTACTGATAG
GCCGTCTGATAAACTTACTTCTGGAGGGACACAAAGTTCTGACCATCCAG
TCACTTCTGATCCAGAAAATGGAGCCAAGTCTGCTGCCAAGGTTAGTAAA
ATAATTATTTCCAACAGGGCTAAGCCTGATGAAATGCAGGTTGAGTCTCA
TAAGCTGCCTGTTGTTATACGGCATCAAGTGGATACCGATAGAGGCCAAG
CTGAATCCCATAAGAAATCTATTGTTATAAAGCCACCAGCAAACATGGAG
AGGGACCAAGTTGAACCTCATAAACCCTCTGTTGTCATACGCCCACCAGC
AGATAAAGATAAGGATCAACCTCAAAAAAAAATTATAATCAAGCGACCGA
AGGAAGTTATTGATTTGGATCAACTTAGTCAAGAGGGAGGCACTTATCCT
GAATACAGGAAAACAAAAAAAATAGTTGAATTGTCAAGCTTTGAGAAGCA
TGGGAAGCAGGAAAGCTTGCGATTAATGGAGCCAAAAGCAAGACGGAAAG
CTAAAGAGGAGAGAAGATGGTGGGAAGAGGAAGAGAAGAGGAGAAATGTG
GAGAGAATAAGAGAAGACAGGGCAAGGAAGCTTTATGAGGAAGAAATGAG
ACTGCTGGAAGAGCGAGAAAGATTTGCTGAGATCACAAGATACACTGAAG
ACATTCGAAGAGAGAGGGAGGAAGAGGAACGCCAAAAAGCAAAGAAGAAA
AAGAAGAAAAAGGCTGAAATAAAAGAGGATTATTTAGAAGACTACAGGAC
AAGAAGAAATGACAGAAGAGCACCGGAAAGAGATCGAGGTGCAAAAAGGA
AACCTGTTGAGTTAGGACGATATGGTGCAGAGTATGTCCCTCCAACAAAG
CGGCGCAGAGGGGGAGAGGTTGGTTTGGCCAACATCTTAGAGCGGATTGT
AGAAACACTTAGAGATAATACCGAGGTGTCCTATCTGTTCTTAAAACCAG
TGTCCAAGAAGGAGGCCCCTGACTACTTGAACATTGTAAAGCACCCAATG
GATTTGTCCACGATAAGGGACAAGGTTAGGCGGATGGAATACAAAAATCA
AGAAGAATTTAGGCATGATGTATGGCAGATTGCCTACAACGCTCATATCT
ACAATGATGGTCGTAATCCTGGTATTCCTCCTCTTGCCGATCAGCTTTTG
GAGCTTTGTGACTACTTGCTACATGAGTCTTCTGATAGCTTGGCTGAAGC
TGAAGCAGGTATAGGGGAAGCTTAATCGGGTAACACATTTAAAATCATTC
ATCATCTGAAAGCCAAAATTCCCTCACAGTAGAACTGCTGCTTCTCTGGG
TATTAGGGGTTTCCAGGCTTTGATGAACCATGGTAATAGAGCTTTGCATA
TGTATAGTTGAAACCTCTAGTGCTCGAGTCGTTTCAGGCATAAAAAAGAA
CCTAGTTCATATAGGATTATTATGGTTAAGAAAAAGGGATGATGACAACC
TAGGTGACATAGCCAGTAAGGTCGTCTAGAGATGAAAGCTTGTAGTGAAG
CAGATCCCAGTTGAAAGCATTTGCTGTTGAGGACTAAAAGACCCCCAAGG
CAGTCATTCAGAAGAGCTTCATGTCTGCATACTGTTGGCCAATAGATGAA
TCATTCCCATGAAAATATGGGACCTATCAGGCAATTATCTTGAAGAGCTT
TCATCTTTTGGCATTAATTATGTTTTACTTGGGGGAAGAATCTGAAGCTG
GTGGGTGAAATGCTTCAGTTGTTTACAAGATGAAAAAACTTGGGCAGTCA
AAAGTCCTTTCCACATAGGTTAGTGTGATTCAAGTTTTATTTAACATTTT
TAATAATAACTTGTGAGAGAGAGGGAAGCTGATATATAGTGAAGAATTTT
GATGCATAATTGATAACTCTGTACCATAAATATCTATGTAACCTCTAATG
TATTCTTCTCCCTTTTTTGTTTCCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR018359Bromodomain_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding