g.arboreum_cottongen_reftransV1_0004526, g.arboreum_cottongen_reftransV1_0004526 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0004526
Unique Nameg.arboreum_cottongen_reftransV1_0004526
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length3025
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0004526:1..3025 .
Chr9:52496243..52501317 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: M5XKR9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000092mg PE=4 SV=1)

HSP 1 Score: 439.884 bits (1130), Expect = 1.778e-128
Identity = 318/537 (59.22%), Postives = 384/537 (71.51%), Query Frame = 1
Query:    1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVX-XXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGMPSTGPLT-KVKILGDN-------VKL--FKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-STDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESLRL 1575
            +IA+QTRWHRIAMIRKLSSEQAASGVKVD  TISKYARGQRMSFLQLQQQ REKCQEIWDRQ+QSLSA+D  E        NSDLDSFAGDLENLLDAEE EE   G++ +  DK D VKGLKMRRRP  AQAEEEIEDEAAEAAELCRLLMDDE +++KKKK +     E+ GL  G +   G E+  R KK       I+ + Q + SY   +N V D K +E+ + K   +G LKGMK N +  TG +  K+KI GD        +KL  +KEKKS+RE F+CGAC Q GHMRTNK+CPKYGED ET  +  +L+K  GK T+L PS Q+Q K   KKL+ KSATKIAVVEAS+ +    +TK LPLKFKC ST++  DK   G T+SS+ PV SDPE G K   KV+KIIISN+ KP+   VES K P+VIR   DTD+G  ES K +IVI+PPAN +RDQVE  KP +  RP  +  ++Q  KKIIIKRPKE+ID+DQ+SQ+G T  E+RKTK+IVEL+S EK+ K+E++ L
Sbjct: 1071 LIARQTRWHRIAMIRKLSSEQAASGVKVDANTISKYARGQRMSFLQLQQQNREKCQEIWDRQVQSLSALDGEENESDSEGNNSDLDSFAGDLENLLDAEECEEVLGGDHESNHDKLDGVKGLKMRRRPSLAQAEEEIEDEAAEAAELCRLLMDDETERRKKKKTRVSG--EELGLAPGSRTNYGFENADRAKK-------IIGAAQPDESYTSKDNPVGDVKLVENPL-KRKKAGTLKGMKNNDITHTGLMNKKLKISGDGGKASELVIKLLTYKEKKSAREKFICGACHQAGHMRTNKNCPKYGEDQETHSDTPDLDKADGKITALNPSNQAQQKTTTKKLVPKSATKIAVVEASDVD-VGLSTKVLPLKFKCGSTEKLPDKQALGETESSERPVASDPETG-KPTFKVNKIIISNKMKPENAPVESQKPPIVIRPPTDTDKGHVESQKPTIVIRPPANTDRDQVESQKPLIAKRPSMEAQREQHHKKIIIKRPKEIIDIDQVSQDGSTPVEHRKTKRIVELTSSEKNRKEENMYL 1595          

HSP 2 Score: 239.965 bits (611), Expect = 1.480e-61
Identity = 110/136 (80.88%), Postives = 124/136 (91.18%), Query Frame = 1
Query: 1888 GAKRKPV-ELGRYGAEYVPPTKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292
            GAKR+PV ELGRYG E  P TKRRRGGEVGLANILERI+ETL+D  EVSYLFLKPVSKKEAPDYL+I++ PMDLSTIR+KVR+MEYK++E+FRHDVWQI YNAH YNDGRNPGIPPLADQLLELCDY+L E+ +SL
Sbjct: 1702 GAKRRPVVELGRYGGESAPITKRRRGGEVGLANILERIIETLKDRIEVSYLFLKPVSKKEAPDYLDIIERPMDLSTIREKVRKMEYKSREQFRHDVWQITYNAHKYNDGRNPGIPPLADQLLELCDYMLVENDESL 1837          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: A0A068TN58_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_1 OS=Coffea canephora GN=GSCOC_T00014726001 PE=4 SV=1)

HSP 1 Score: 428.328 bits (1100), Expect = 2.088e-124
Identity = 315/518 (60.81%), Postives = 372/518 (71.81%), Query Frame = 1
Query:    4 IAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGMPSTGPLTK-VKILGDNVKLFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-STDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKH 1551
            IAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSF+QLQQQTREKCQEIWDRQ+QSLSAV+GEENESDSEANSDLDSFAGDLENLLDAEE E+GE+GNN +K D  D VKG+KMRRRP++AQAEEEIEDEAAEAAELCR+LMDD D+  +KKKKK K   +   L    Q ++GVE+++R++KT+ +   I R+ Q +G     EN  +D K+ E+   K ++SGKLK  KKN +     L K VKILGD +K+ KEKKS+RE+FVCGACGQLGHMRTNK+CPKYGED ET+ E  ELEK  GK   L+ + Q Q K   KKLI KSATKIAVVEA E +KSST  KA  LK KC +TD+P DKLT   +Q+SD PVTSD E   KSA KV+KII SN+ KPD+M VES K  +VIR   ++DR Q    +K I+IK P                                     KEVI++D +SQEG +  EYRKTKKIVEL+S +KH
Sbjct: 1143 IAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFMQLQQQTREKCQEIWDRQVQSLSAVEGEENESDSEANSDLDSFAGDLENLLDAEECEDGEDGNNVSKNDIIDGVKGIKMRRRPFQAQAEEEIEDEAAEAAELCRMLMDD-DEADRKKKKKVKVGGDQVRLGSVSQLKLGVENVERIQKTNNV---IKRNIQLDGQPLAKENATRDRKEDENISAKKNLSGKLKAKKKNDIEQMELLKKKVKILGDGIKIVKEKKSARESFVCGACGQLGHMRTNKNCPKYGEDVETRAENNELEKNLGKVGILDQADQPQQKTSTKKLIQKSATKIAVVEAHEDDKSST--KAKILKVKCGTTDKPPDKLTPATSQNSDKPVTSDAETVHKSAVKVNKIIFSNKTKPDDMLVESQKPSIVIRPPTESDRDQP---RKKIIIKRP-------------------------------------KEVINVDDVSQEGSSGIEYRKTKKIVELTSVDKH 1614          

HSP 2 Score: 219.55 bits (558), Expect = 4.578e-55
Identity = 101/128 (78.91%), Postives = 112/128 (87.50%), Query Frame = 1
Query: 1891 AKRKP-VELGRYGAEYVPPTKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLL 2271
            AKRKP  + GRY A Y P TKRRRGGEVGL+NILE IVETL++  E+SYLFLKPVSKK+APDYL+I+K PMDLSTIR+KVRRMEYK  EEFRHD+WQI +NAH YND RNPGIPPLADQLLELCDYLL
Sbjct: 1728 AKRKPGPDTGRYSAGYGPATKRRRGGEVGLSNILESIVETLKEKQEISYLFLKPVSKKDAPDYLDIIKRPMDLSTIREKVRRMEYKRSEEFRHDIWQITFNAHAYNDRRNPGIPPLADQLLELCDYLL 1855          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: A0A059ASQ0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02627 PE=4 SV=1)

HSP 1 Score: 425.631 bits (1093), Expect = 1.903e-123
Identity = 303/528 (57.39%), Postives = 384/528 (72.73%), Query Frame = 1
Query:    1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGMPSTGPLTKVKILGDNVKLFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-STDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESLRLME 1581
            +IAK TRWHRIAMIR+LSSEQAASG+KVDPTTISKYARGQRMSF+QLQQQTREKCQEIWDRQ+ SL+A+DG+E  SDSE+NSDLDSFAGDLENLLDAEEFE  E  N   K D++D VKGLKMRR     +AEE+++DEAAEAAELCR+LMDD D+ +  KK+K  AV ++ G   GLQP    E  +R+KK   + KQ+  S   +GS    ++   D +D+E+ + K +   K+K              K+KILGD +K+FKEKKS+RE+FVCGACGQLGHMRTNK+CP+YGED ++Q EA + +K  GKS  ++P+   Q K + KK++ KSATKI+  E +EG+KS + TK   LK KC S D+P D +T G TQ S+    S  + G KSA KV+KI+IS++ KP ++Q+ESHK  +VIR   D DR   E+ K SIV +PP + E+ Q EPH+PS+VIRPPAD +K+Q  KK+IIKRPKEVIDLDQ SQEG T  E+RKTKKI+ELS FE++  QE+  L E
Sbjct: 1142 IIAKLTRWHRIAMIRELSSEQAASGIKVDPTTISKYARGQRMSFIQLQQQTREKCQEIWDRQLHSLTAIDGDEGASDSESNSDLDSFAGDLENLLDAEEFEGDEAINER-KHDRSDVVKGLKMRRHSSLVEAEEKVQDEAAEAAELCRMLMDD-DETELFKKEKIGAVRKELGPGPGLQPVFVSEKGERIKKPKKVVKQVSSSVAGDGS---KQSMNGDQEDVETLLAKKNFPMKVKA------------KKIKILGDGMKIFKEKKSARESFVCGACGQLGHMRTNKNCPRYGEDLDSQAEAIDPDKAMGKSHLVDPASLPQQKSVTKKMMPKSATKISPAENTEGQKSGSKTKVHSLKLKCGSIDKPPDDITLGSTQGSEQVAMSIIDGGNKSAVKVNKIVISSKTKPADVQLESHKPSIVIRRPTDADRVHPEAQKTSIVFRPPVDTEKAQTEPHRPSIVIRPPADIEKEQSHKKLIIKRPKEVIDLDQASQEGSTDFEHRKTKKIIELSDFERYRTQENTYLTE 1652          

HSP 2 Score: 228.794 bits (582), Expect = 4.771e-58
Identity = 120/154 (77.92%), Postives = 134/154 (87.01%), Query Frame = 1
Query: 1834 LEDYXXXXXXXXXXXXXXGAKRKP-VELGRYGAEYVPPTKRRRGGEVGLANILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292
            LEDYR RRND+R  ERDR AKRKP +E G+  A+Y  PTKRRRGGEVGLANILERIVETLR   EVSYLFLKPV+KKEAPDYL+I+  PMDLSTIR+KVRRMEYKN+E+FRHDVWQI +NAH YND RNP IPPLADQLLELCDYLL+E+ +SL
Sbjct: 1739 LEDYRARRNDKRMLERDRTAKRKPLIEPGKLSADYALPTKRRRGGEVGLANILERIVETLRGRQEVSYLFLKPVTKKEAPDYLDIIDKPMDLSTIREKVRRMEYKNREDFRHDVWQITFNAHRYNDRRNPQIPPLADQLLELCDYLLNENDESL 1892          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: A0A0D2USR3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G137400 PE=4 SV=1)

HSP 1 Score: 420.239 bits (1079), Expect = 4.132e-123
Identity = 276/284 (97.18%), Postives = 281/284 (98.94%), Query Frame = 1
Query:    1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGMPSTGPLTKVKILGDNVKLFKEKKSSRETFVCGACGQLGHM 852
            VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVDGEENESDSEANSDLDSFAGDLENLLDAEEFEEGEEGNNNNKVDKADAVKGLKMRRRPYKAQAEEEIEDEAAEAAELCRLLMDDEDDQKKKKKKKNKAVTEDAGLTFGLQPRIGVESLQ VKKTSIIPKQIVRSTQSNGSYP+NEN VKDTKDIESRIFKGSVSGKLKGMKKNGMP+TGPLTKVKILGDNVKLFKEKKSSRETFVCGACGQ+ ++
Sbjct: 1120 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVDGEENESDSEANSDLDSFAGDLENLLDAEEFEEGEEGNNNNKVDKADAVKGLKMRRRPYKAQAEEEIEDEAAEAAELCRLLMDDEDDQKKKKKKKNKAVTEDAGLTFGLQPRIGVESLQCVKKTSIIPKQIVRSTQSNGSYPLNENIVKDTKDIESRIFKGSVSGKLKGMKKNGMPNTGPLTKVKILGDNVKLFKEKKSSRETFVCGACGQVCNL 1403          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: A0A0B2PVR2_GLYSO (Transcription initiation factor TFIID subunit 1-A OS=Glycine soja GN=glysoja_006271 PE=4 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 5.168e-117
Identity = 307/528 (58.14%), Postives = 372/528 (70.45%), Query Frame = 1
Query:    1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNG-MPSTGPLTKVKI-LGDNVK--LFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-STDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESL 1569
            VIAKQTRWHRIAMIRKLSSEQA SGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQ+QSLSAV+G+ENESDSE NSDLDSFAGDLENLLDAEE EEGEEG N+ K DK D VKGLKMRRRP  AQAEEEIEDEAAEAAELCRLLMDD +  +KKKKK    V E A L   +Q +   ++ ++V       KQI  + Q +G+  + E+ + D ++ E+   K S S K+   KKN  MP + P  K+K+ +G+ +K  +FKEKK SRETFVCGACG+ GHMRTNK+CPKYGED ETQ+E+ ++EK+ GKS+ ++PS  SQ K   KK ++KSATK+A V+         N+  +PLKFKC ST++ SDK      QSSD PVTSD E  AKS AKV+KIII  + KPD+   ES K  +VIR   D+ RGQ +SHK  I I+PP  ++R+Q   HK  V+                  KR KEVIDL+     G T  ++RKTK+IVELS+FEK  KQE++
Sbjct:  348 VIAKQTRWHRIAMIRKLSSEQATSGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDSEGNSDLDSFAGDLENLLDAEECEEGEEGTNDLKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDYEADRKKKKKAKVMVGE-ARLVPKMQSKFSFDNAEQV-------KQITNTLQLDGTNHLKEDAITDLREEENVPAKKSKSLKVNKAKKNDIMPISIPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGKAGHMRTNKNCPKYGEDLETQLESADMEKSSGKSSFVDPSSLSQHKAPSKKSMSKSATKVAPVD---------NSTKIPLKFKCSSTEKSSDK--PAVLQSSDKPVTSDSET-AKS-AKVNKIIIPKKVKPDDTLAESRKHAIVIRPPTDSGRGQVDSHKFPIKIRPPTEIDREQ--SHKKIVI------------------KRTKEVIDLELDGPGGNTGLQHRKTKRIVELSNFEKQKKQETV 834          

HSP 2 Score: 200.29 bits (508), Expect = 2.540e-49
Identity = 96/138 (69.57%), Postives = 119/138 (86.23%), Query Frame = 1
Query: 1888 GAKRKPVELGRYGAEYVPPTKRRRGG--EVGLANILERIVETL-RDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292
            G +R   ELG+ GA+Y+PPTKRRRGG  EVGLANILE +V+T+ +D  ++SYLFLKPVSKKEAPDYL++++ PMDLS IR++VR MEYK++E+FRHD+WQI +NAH YNDGRNPGIPPLAD LLE CDYLL+E+ DSL
Sbjct:  944 GKRRSVTELGKIGADYMPPTKRRRGGGGEVGLANILESVVDTIVKDRYDLSYLFLKPVSKKEAPDYLDVIERPMDLSRIRERVRNMEYKSREDFRHDMWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSL 1081          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: K7LF91_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 402.134 bits (1032), Expect = 1.770e-115
Identity = 308/528 (58.33%), Postives = 373/528 (70.64%), Query Frame = 1
Query:    1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNG-MPSTGPLTKVKI-LGDNVK--LFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-STDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESL 1569
            VIAKQTRWHRIAMIRKLSSEQA SGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQ+QSLSAV+G+ENESDSE NSDLDSFAGDLENLLDAEE EEGEEG N+ K DK D VKGLKMRRRP  AQAEEEIEDEAAEAAELCRLLMDD +  +KKKKK    V E A L   +Q +   ++ ++V       KQI  + Q +G+  + E+ + D ++ E+   K S S K+   KKN  MP + P  K+K+ +G+ +K  +FKEKK SRETFVCGACG+ GHMRTNK+CPKYGED ETQ+E+ ++EK+ GKS+ ++PS  SQ K   KK ++KSATK+A V+         N+  +PLKFKC ST++ SDK      QSSD PVTSD E  AKS AKV+KIII  + KPD+   ES K  +VIR   D+ RGQ +SHK  I I+PP  ++R+Q   HK  V+                  KR KEVIDL+  S  G T  ++RKTK+IVELS+FEK  KQE++
Sbjct: 1094 VIAKQTRWHRIAMIRKLSSEQATSGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDSEGNSDLDSFAGDLENLLDAEECEEGEEGTNDLKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDYEADRKKKKKAKVMVGE-ARLVPKMQSKFSFDNAEQV-------KQITNTLQLDGTNHLKEDAITDLREEENVPAKKSKSLKVNKAKKNDIMPISIPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGKAGHMRTNKNCPKYGEDLETQLESADMEKSSGKSSFVDPSSLSQHKAPSKKSMSKSATKVAPVD---------NSTKIPLKFKCSSTEKSSDKPAVETLQSSDKPVTSDSET-AKS-AKVNKIIIPKKVKPDDTLAESRKHAIVIRPPTDSGRGQVDSHKFPIKIRPPTEIDREQ--SHKKIVI------------------KRTKEVIDLELDSPGGNTGLQHRKTKRIVELSNFEKQKKQETV 1582          

HSP 2 Score: 199.904 bits (507), Expect = 7.062e-49
Identity = 96/138 (69.57%), Postives = 119/138 (86.23%), Query Frame = 1
Query: 1888 GAKRKPVELGRYGAEYVPPTKRRRGG--EVGLANILERIVETL-RDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292
            G +R   ELG+ GA+Y+PPTKRRRGG  EVGLANILE +V+T+ +D  ++SYLFLKPVSKKEAPDYL++++ PMDLS IR++VR MEYK++E+FRHD+WQI +NAH YNDGRNPGIPPLAD LLE CDYLL+E+ DSL
Sbjct: 1692 GKRRSVTELGKIGADYMPPTKRRRGGGGEVGLANILESVVDTIVKDRYDLSYLFLKPVSKKEAPDYLDVIERPMDLSRIRERVRNMEYKSREDFRHDMWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSL 1829          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: I1L578_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 401.749 bits (1031), Expect = 2.815e-115
Identity = 308/528 (58.33%), Postives = 373/528 (70.64%), Query Frame = 1
Query:    1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNG-MPSTGPLTKVKI-LGDNVK--LFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-STDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESL 1569
            VIAKQTRWHRIAMIRKLSSEQA SGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQ+QSLSAV+G+ENESDSE NSDLDSFAGDLENLLDAEE EEGEEG N+ K DK D VKGLKMRRRP  AQAEEEIEDEAAEAAELCRLLMDD +  +KKKKK    V E A L   +Q +   ++ ++V       KQI  + Q +G+  + E+ + D ++ E+   K S S K+   KKN  MP + P  K+K+ +G+ +K  +FKEKK SRETFVCGACG+ GHMRTNK+CPKYGED ETQ+E+ ++EK+ GKS+ ++PS  SQ K   KK ++KSATK+A V+         N+  +PLKFKC ST++ SDK      QSSD PVTSD E  AKS AKV+KIII  + KPD+   ES K  +VIR   D+ RGQ +SHK  I I+PP  ++R+Q   HK  V+                  KR KEVIDL+  S  G T  ++RKTK+IVELS+FEK  KQE++
Sbjct: 1143 VIAKQTRWHRIAMIRKLSSEQATSGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDSEGNSDLDSFAGDLENLLDAEECEEGEEGTNDLKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDYEADRKKKKKAKVMVGE-ARLVPKMQSKFSFDNAEQV-------KQITNTLQLDGTNHLKEDAITDLREEENVPAKKSKSLKVNKAKKNDIMPISIPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGKAGHMRTNKNCPKYGEDLETQLESADMEKSSGKSSFVDPSSLSQHKAPSKKSMSKSATKVAPVD---------NSTKIPLKFKCSSTEKSSDKPAVETLQSSDKPVTSDSET-AKS-AKVNKIIIPKKVKPDDTLAESRKHAIVIRPPTDSGRGQVDSHKFPIKIRPPTEIDREQ--SHKKIVI------------------KRTKEVIDLELDSPGGNTGLQHRKTKRIVELSNFEKQKKQETV 1631          

HSP 2 Score: 199.904 bits (507), Expect = 7.655e-49
Identity = 96/138 (69.57%), Postives = 119/138 (86.23%), Query Frame = 1
Query: 1888 GAKRKPVELGRYGAEYVPPTKRRRGG--EVGLANILERIVETL-RDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292
            G +R   ELG+ GA+Y+PPTKRRRGG  EVGLANILE +V+T+ +D  ++SYLFLKPVSKKEAPDYL++++ PMDLS IR++VR MEYK++E+FRHD+WQI +NAH YNDGRNPGIPPLAD LLE CDYLL+E+ DSL
Sbjct: 1741 GKRRSVTELGKIGADYMPPTKRRRGGGGEVGLANILESVVDTIVKDRYDLSYLFLKPVSKKEAPDYLDVIERPMDLSRIRERVRNMEYKSREDFRHDMWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSL 1878          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: K7KJP5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 393.66 bits (1010), Expect = 1.847e-112
Identity = 305/528 (57.77%), Postives = 371/528 (70.27%), Query Frame = 1
Query:    1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGM-PSTGPLTKVKI-LGDNVK--LFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-STDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESL 1569
            VIAKQTRWHRIAMIRKLSSEQA SGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQ+QSLSAV+G+ENESD E NSDLDSFAGDLENLLDAEE EEGEE  N+ K DK D VKGLKMRR P  AQAEEEIED+AAEAAELCRLLMDD++  KKKKKK    V E A L   +Q +   ++ ++V       KQI  + Q +G+    E+ + D ++ E+   K S S K+  +KKN + P + P  K+K+ +G+ +K  +FKEKK SRETFVCGACG+ GHMRTNK+CPKYGED ETQ+E+T++EK+ GKS+ ++PS  SQ K   KK ++K  TKIA V+         N+  +PLKFKC ST++ SDK      QSSD PVTSD E  AKS AKV+KIII  + KPD+ Q ES K  +VIR   D+ RGQ +SHK  I I+PP  ++R+Q   HK  V+                  KR KEVIDL+  S  G T  ++RKTK+IVELS+FEK  KQE++
Sbjct: 1143 VIAKQTRWHRIAMIRKLSSEQATSGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDLEGNSDLDSFAGDLENLLDAEECEEGEESTNDLKRDKGDGVKGLKMRRHPTLAQAEEEIEDDAAEAAELCRLLMDDDEADKKKKKKAKVIVGE-ARLVPKMQSKFSFDNAEQV-------KQITNTLQLDGTNHWKEDAITDLREEENFPTKKSKSLKVNKVKKNDITPISIPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGKAGHMRTNKNCPKYGEDLETQLESTDMEKSSGKSSFVDPSSLSQHKAPSKKSMSKGTTKIAPVD---------NSSKIPLKFKCSSTEKSSDKPAIESLQSSDKPVTSDSET-AKS-AKVNKIIIPKKVKPDDTQAESGKHAIVIRPPTDSGRGQVDSHKFPIKIRPPTEIDREQ--NHKKIVI------------------KRTKEVIDLELDSPGGNTGLQHRKTKRIVELSNFEKQKKQETV 1631          

HSP 2 Score: 200.675 bits (509), Expect = 4.512e-49
Identity = 97/138 (70.29%), Postives = 119/138 (86.23%), Query Frame = 1
Query: 1888 GAKRKPVELGRYGAEYVPPTKRRRGG--EVGLANILERIVETL-RDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292
            G +R   ELG+ GA+Y+PPTKRRRGG  EVGLANILE +V+T+ +D  ++SYLFLKPVSKKEAPDYL+I++ PMDLS IR++VR MEYK++E+FRHD+WQI +NAH YNDGRNPGIPPLAD LLE CDYLL+E+ DSL
Sbjct: 1740 GKRRSITELGKIGADYMPPTKRRRGGGGEVGLANILESVVDTIVKDRYDLSYLFLKPVSKKEAPDYLDIIERPMDLSRIRERVRNMEYKSREDFRHDMWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSL 1877          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: A0A0B2SEW9_GLYSO (Transcription initiation factor TFIID subunit 1-A OS=Glycine soja GN=glysoja_040360 PE=4 SV=1)

HSP 1 Score: 381.719 bits (979), Expect = 2.077e-108
Identity = 302/528 (57.20%), Postives = 368/528 (69.70%), Query Frame = 1
Query:    1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGM-PSTGPLTKVKI-LGDNVK--LFKEKKSSRETFVCGACGQLGHMRTNKHCPKYGEDPETQVEATELEKTPGKSTSLEPSGQSQLKMMKKKLITKSATKIAVVEASEGEKSSTNTKALPLKFKC-STDRPSDKLTSGGTQSSDHPVTSDPENGAKSAAKVSKIIISNRAKPDEMQVESHKLPVVIRHQVDTDRGQAESHKKSIVIKPPANMERDQVEPHKPSVVIXXXXXXXXXXXXXXXXXXXXXEVIDLDQLSQEGGTYPEYRKTKKIVELSSFEKHGKQESL 1569
            VIAKQTRWHRIAMIRKLSSEQA SGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQ+QSLSAV+G+ENESD E NSDLDSFAGDLENLLDAEE EEGEE  N+ K D     KGLKMRR P  AQAEEEIED+AAEAAELCRLLMDD++  KKKKKK    V E A L   +Q +   ++ ++V       KQI  + Q +G+    E+ + D ++ E+   K S S K+  +KKN + P + P  K+K+ +G+ +K  +FKEKK SRETFVCGACG+ GHMRTNK+CPKYGED ETQ+E+T++EK+ GKS+ ++PS  SQ K   KK ++K  TKIA V+         N+  +PLKFKC ST++ SDK      QSSD PVTSD E  AKS AKV+KIII  + KPD+ Q ES K  +VIR   D+ RGQ +SHK  I I+PP  ++R+Q   HK  V+                  KR KEVIDL+  S  G T  ++RKTK+IVELS+FEK  KQE++
Sbjct: 1130 VIAKQTRWHRIAMIRKLSSEQATSGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDLEGNSDLDSFAGDLENLLDAEECEEGEESTNDLKRD-----KGLKMRRHPTLAQAEEEIEDDAAEAAELCRLLMDDDEADKKKKKKAKVIVGE-ARLVPKMQSKFSFDNAEQV-------KQITNTLQLDGTNHWKEDAITDLREEENFPTKKSKSLKVNKVKKNDITPISIPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGKAGHMRTNKNCPKYGEDLETQLESTDMEKSSGKSSFVDPSSLSQHKAPSKKSMSKGTTKIAPVD---------NSSKIPLKFKCSSTEKSSDKPAIESLQSSDKPVTSDSET-AKS-AKVNKIIIPKKVKPDDTQAESGKHAIVIRPPTDSGRGQVDSHKFPIKIRPPTEIDREQ--NHKKIVI------------------KRTKEVIDLELDSPGGNTGLQHRKTKRIVELSNFEKQKKQETV 1613          

HSP 2 Score: 200.675 bits (509), Expect = 4.364e-49
Identity = 97/138 (70.29%), Postives = 119/138 (86.23%), Query Frame = 1
Query: 1888 GAKRKPVELGRYGAEYVPPTKRRRGG--EVGLANILERIVETL-RDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYNDGRNPGIPPLADQLLELCDYLLHESSDSL 2292
            G +R   ELG+ GA+Y+PPTKRRRGG  EVGLANILE +V+T+ +D  ++SYLFLKPVSKKEAPDYL+I++ PMDLS IR++VR MEYK++E+FRHD+WQI +NAH YNDGRNPGIPPLAD LLE CDYLL+E+ DSL
Sbjct: 1722 GKRRSITELGKIGADYMPPTKRRRGGGGEVGLANILESVVDTIVKDRYDLSYLFLKPVSKKEAPDYLDIIERPMDLSRIRERVRNMEYKSREDFRHDMWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSL 1859          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Match: A0A0D2VLX8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G137400 PE=4 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 3.216e-108
Identity = 257/261 (98.47%), Postives = 259/261 (99.23%), Query Frame = 1
Query:    1 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVXXXXXXXXXXXXXXXXXFAGXXXXXXXXXXXXXXXXXXXXXKVDKADAVKGLKMRRRPYKXXXXXXXXXXXXXXXXLCRLLMDDEDDQXXXXXXXXXAVTEDAGLTFGLQPRIGVESLQRVKKTSIIPKQIVRSTQSNGSYPMNENFVKDTKDIESRIFKGSVSGKLKGMKKNGMPSTGPLTKVKILGDNVK 783
            VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVDGEENESDSEANSDLDSFAGDLENLLDAEEFEEGEEGNNNNKVDKADAVKGLKMRRRPYKAQAEEEIEDEAAEAAELCRLLMDDEDDQKKKKKKKNKAVTEDAGLTFGLQPRIGVESLQ VKKTSIIPKQIVRSTQSNGSYP+NEN VKDTKDIESRIFKGSVSGKLKGMKKNGMP+TGPLTKVKILGDNVK
Sbjct: 1120 VIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQIQSLSAVDGEENESDSEANSDLDSFAGDLENLLDAEEFEEGEEGNNNNKVDKADAVKGLKMRRRPYKAQAEEEIEDEAAEAAELCRLLMDDEDDQKKKKKKKNKAVTEDAGLTFGLQPRIGVESLQCVKKTSIIPKQIVRSTQSNGSYPLNENIVKDTKDIESRIFKGSVSGKLKGMKKNGMPNTGPLTKVKILGDNVK 1380          
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Match: BAZ1B_HUMAN (Tyrosine-protein kinase BAZ1B OS=Homo sapiens GN=BAZ1B PE=1 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 9.963e-7
Identity = 27/74 (36.49%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 1984 ILERIVETLRDNTEVSYLFLKPVSKKEAPDYLNIVKHPMDLSTIRDKVRRMEYKNQEEFRHDVWQIAYNAHIYN 2205
            IL +IV+        S+ F +PV++ EA DY +++ HPMD  T+++K     Y++ +EF  D+ Q+  NA +YN
Sbjct: 1351 ILHKIVKY-----RFSWPFREPVTRDEAEDYYDVITHPMDFQTVQNKCSCGSYRSVQEFLTDMKQVFTNAEVYN 1419          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M5XKR9_PRUPE1.778e-12859.22Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A068TN58_COFCA2.088e-12460.81Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A059ASQ0_EUCGR1.903e-12357.39Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A0D2USR3_GOSRA4.132e-12397.18Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B2PVR2_GLYSO5.168e-11758.14Transcription initiation factor TFIID subunit 1-A ... [more]
K7LF91_SOYBN1.770e-11558.33Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1L578_SOYBN2.815e-11558.33Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
K7KJP5_SOYBN1.847e-11257.77Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2SEW9_GLYSO2.077e-10857.20Transcription initiation factor TFIID subunit 1-A ... [more]
A0A0D2VLX8_GOSRA3.216e-10898.47Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0004526 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
BAZ1B_HUMAN9.963e-736.49Tyrosine-protein kinase BAZ1B OS=Homo sapiens GN=B... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 139..159
NoneNo IPR availableCOILSCoilCoilcoord: 117..137
NoneNo IPR availableCOILSCoilCoilcoord: 540..598
NoneNo IPR availablePFAMPF15288zf-CCHC_6coord: 263..281
e-value: 6.4E-5
score: 22.6
NoneNo IPR availablePANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 1..330
NoneNo IPR availablePANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 412..594
NoneNo IPR availablePANTHERPTHR13900:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1-RELATEDcoord: 624..759
NoneNo IPR availablePANTHERPTHR13900:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1-RELATEDcoord: 1..330
NoneNo IPR availablePANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 624..759
NoneNo IPR availablePANTHERPTHR13900:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1-RELATEDcoord: 412..594
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 693..711
score: 26.43
coord: 663..676
score: 31.68
coord: 711..730
score: 26.96
coord: 677..693
score: 54.35
IPR001487BromodomainSMARTSM00297bromo_6coord: 640..750
e-value: 5.8E-23
score: 92.3
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 651..726
e-value: 1.2E-18
score: 66.8
IPR001487BromodomainGENE3D1.20.920.10coord: 637..752
e-value: 6.5E-26
score: 89.9
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 660..730
score: 18.571
IPR001487BromodomainSUPERFAMILY47370Bromodomaincoord: 632..751
IPR018359Bromodomain, conserved sitePROSITEPS00633BROMODOMAIN_1coord: 665..722

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0004526 ID=g.arboreum_cottongen_reftransV1_0004526; Name=g.arboreum_cottongen_reftransV1_0004526; organism=Gossypium arboreum; type=contig; length=3025bp
GTGATTGCAAAACAAACTAGGTGGCATCGTATTGCAATGATACGCAAGCT
CTCAAGTGAGCAAGCTGCATCAGGAGTCAAGGTTGATCCAACAACTATAA
GCAAGTATGCACGGGGACAGCGAATGTCCTTTCTTCAGTTACAACAGCAG
ACCAGAGAAAAATGTCAGGAAATATGGGATCGCCAAATTCAGTCTCTTTC
AGCTGTTGATGGTGAAGAAAATGAAAGTGATTCTGAGGCAAATAGTGATC
TTGATTCCTTTGCTGGCGACCTAGAAAATTTGCTTGATGCAGAGGAATTC
GAAGAAGGGGAAGAAGGTAACAACAATAACAAGGTTGACAAAGCAGATGC
TGTTAAGGGGCTCAAGATGAGAAGACGTCCCTATAAGGCTCAGGCAGAAG
AAGAAATTGAAGATGAGGCTGCTGAAGCTGCTGAATTATGTCGTTTACTC
ATGGATGATGAGGATGACCAAAAGAAGAAAAAAAAGAAGAAAAACAAAGC
TGTTACAGAAGATGCTGGGTTGACTTTCGGCTTACAACCACGCATTGGTG
TTGAGAGTTTACAACGTGTTAAGAAAACAAGCATAATTCCCAAGCAAATT
GTTCGTTCTACTCAATCTAATGGGTCATATCCTATGAATGAGAATTTTGT
CAAGGATACAAAGGATATTGAAAGTAGAATTTTTAAAGGAAGCGTGTCTG
GAAAGTTGAAAGGAATGAAAAAAAATGGTATGCCAAGCACAGGTCCATTA
ACTAAAGTCAAAATATTGGGAGACAATGTCAAGTTGTTCAAGGAGAAGAA
ATCATCGAGAGAAACTTTTGTCTGTGGAGCTTGTGGTCAGCTTGGACACA
TGAGGACCAACAAGCACTGCCCCAAGTATGGAGAAGATCCAGAAACGCAG
GTTGAAGCTACTGAGTTGGAAAAAACTCCTGGGAAATCAACTTCGCTAGA
ACCCTCTGGTCAGTCCCAATTGAAGATGATGAAAAAGAAGCTCATAACTA
AAAGTGCGACAAAGATAGCAGTTGTAGAAGCTTCGGAGGGTGAAAAATCT
AGTACAAACACAAAAGCTCTTCCGTTGAAATTCAAATGCTCTACTGATAG
GCCGTCTGATAAACTTACTTCTGGAGGGACACAAAGTTCTGACCATCCAG
TCACTTCTGATCCAGAAAATGGAGCCAAGTCTGCTGCCAAGGTTAGTAAA
ATAATTATTTCCAACAGGGCTAAGCCTGATGAAATGCAGGTTGAGTCTCA
TAAGCTGCCTGTTGTTATACGGCATCAAGTGGATACCGATAGAGGCCAAG
CTGAATCCCATAAGAAATCTATTGTTATAAAGCCACCAGCAAACATGGAG
AGGGACCAAGTTGAACCTCATAAACCCTCTGTTGTCATACGCCCACCAGC
AGATAAAGATAAGGATCAACCTCAAAAAAAAATTATAATCAAGCGACCGA
AGGAAGTTATTGATTTGGATCAACTTAGTCAAGAGGGAGGCACTTATCCT
GAATACAGGAAAACAAAAAAAATAGTTGAATTGTCAAGCTTTGAGAAGCA
TGGGAAGCAGGAAAGCTTGCGATTAATGGAGCCAAAAGCAAGACGGAAAG
CTAAAGAGGAGAGAAGATGGTGGGAAGAGGAAGAGAAGAGGAGAAATGTG
GAGAGAATAAGAGAAGACAGGGCAAGGAAGCTTTATGAGGAAGAAATGAG
ACTGCTGGAAGAGCGAGAAAGATTTGCTGAGATCACAAGATACACTGAAG
ACATTCGAAGAGAGAGGGAGGAAGAGGAACGCCAAAAAGCAAAGAAGAAA
AAGAAGAAAAAGGCTGAAATAAAAGAGGATTATTTAGAAGACTACAGGAC
AAGAAGAAATGACAGAAGAGCACCGGAAAGAGATCGAGGTGCAAAAAGGA
AACCTGTTGAGTTAGGACGATATGGTGCAGAGTATGTCCCTCCAACAAAG
CGGCGCAGAGGGGGAGAGGTTGGTTTGGCCAACATCTTAGAGCGGATTGT
AGAAACACTTAGAGATAATACCGAGGTGTCCTATCTGTTCTTAAAACCAG
TGTCCAAGAAGGAGGCCCCTGACTACTTGAACATTGTAAAGCACCCAATG
GATTTGTCCACGATAAGGGACAAGGTTAGGCGGATGGAATACAAAAATCA
AGAAGAATTTAGGCATGATGTATGGCAGATTGCCTACAACGCTCATATCT
ACAATGATGGTCGTAATCCTGGTATTCCTCCTCTTGCCGATCAGCTTTTG
GAGCTTTGTGACTACTTGCTACATGAGTCTTCTGATAGCTTGGCTGAAGC
TGAAGCAGGTATAGGGGAAGCTTAATCGGGTAACACATTTAAAATCATTC
ATCATCTGAAAGCCAAAATTCCCTCACAGTAGAACTGCTGCTTCTCTGGG
TATTAGGGGTTTCCAGGCTTTGATGAACCATGGTAATAGAGCTTTGCATA
TGTATAGTTGAAACCTCTAGTGCTCGAGTCGTTTCAGGCATAAAAAAGAA
CCTAGTTCATATAGGATTATTATGGTTAAGAAAAAGGGATGATGACAACC
TAGGTGACATAGCCAGTAAGGTCGTCTAGAGATGAAAGCTTGTAGTGAAG
CAGATCCCAGTTGAAAGCATTTGCTGTTGAGGACTAAAAGACCCCCAAGG
CAGTCATTCAGAAGAGCTTCATGTCTGCATACTGTTGGCCAATAGATGAA
TCATTCCCATGAAAATATGGGACCTATCAGGCAATTATCTTGAAGAGCTT
TCATCTTTTGGCATTAATTATGTTTTACTTGGGGGAAGAATCTGAAGCTG
GTGGGTGAAATGCTTCAGTTGTTTACAAGATGAAAAAACTTGGGCAGTCA
AAAGTCCTTTCCACATAGGTTAGTGTGATTCAAGTTTTATTTAACATTTT
TAATAATAACTTGTGAGAGAGAGGGAAGCTGATATATAGTGAAGAATTTT
GATGCATAATTGATAACTCTGTACCATAAATATCTATGTAACCTCTAATG
TATTCTTCTCCCTTTTTTGTTTCCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR018359Bromodomain_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding