g.arboreum_cottongen_reftransV1_0013641, g.arboreum_cottongen_reftransV1_0013641 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: A0A068UXX7_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_74 OS=Coffea canephora GN=GSCOC_T00038125001 PE=4 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 1.618e-77 Identity = 153/327 (46.79%), Postives = 212/327 (64.83%), Query Frame = 3 Query: 1023 AKENLKFSEECLQAISNNDVEDNVVPIVVRPGHIRFEPLEEENAEQANQYSQISVKTFQWNGITSKKKGQKWGMEK-TFLKRND-NSFSHVSSEMVDVNDKATVTNDMDFDKLMPYSSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYPNAFEKKTDEEASELPDTSLYGEDGSLEIDYSSLIDVRLVKLGILNATIAIADDNNEKYAQNQDVLTRQP------------NGSKEANSVSAASPAQANGAVNVWEEINQALSAKKAELSKEDGWSRADSSGRSAWSFRALRRSALGPTMAFLRAQNGI 1961 A +N SE+ Q S ++D VVPIV+RPGHIRFEPLE + AE NQ +S ++FQWNGITSK+KGQKWG EK +F +RND N+ + + + +DF+KL S +PK GD++AYRL+ELSSTWTPE+ FRVG +S +++S++++L PVPGYP K DEE + PD SLY EDGSLEI +++LIDVR+VK G +T A+ + N A ++ P GS EAN S + + N+WE++++AL+AKK ELS+ + W +A SSG+S+WS+RAL+ SALGPTMA LR++N + Sbjct: 380 ATQNGSASEQSNQKKS---LDDEVVPIVIRPGHIRFEPLENDQAEAQNQ---VSEESFQWNGITSKRKGQKWGTEKNSFSRRNDYNNANRDRPVTLSAPKDVHLNGPIDFEKLPLLSYMPKVGDVIAYRLLELSSTWTPEISPFRVGYVSWCSSKSDKLILMPVPGYP-VTTKNADEEPDKQPDDSLYKEDGSLEIGFATLIDVRVVKDGHEGSTEAVTGEANGGPAATENATVSDPPANNETQIDAPAPGSGEANCGKQKSASGSENGGNIWEQLSEALNAKKEELSQGNSWDKA-SSGKSSWSYRALKGSALGPTMALLRSKNKL 698 HSP 2 Score: 174.096 bits (440), Expect = 1.061e-42 Identity = 100/197 (50.76%), Postives = 128/197 (64.97%), Query Frame = 3 Query: 72 METARLRLVFEDP-NILSKSQKQQGLKRSWFILKPQH-QTIFDLSSDLLHIFDLQKSCPNGLILSMDGFVLPPFEPTCILKDKDIVSVKMKGGKSTEIIKAGNGMNYLEELETMERLPVNTGVKHLANEEFDKETGGYKSELEEDEQELAPLEDR----------------AQVEST----PIENMVSKKRKARDKL 596 MET RLRL F D ILS+SQK +GL+R W +LKP H +TI DL++ +LH F LQ SCP+GL+L MDG+VLP FE T ILKDKD++SV KG T I+ N +N + E+E +E+ PVNTG LANEEF+KETGGY+S+ EDE E A +D+ Q+E++ EN SKKRKA +KL Sbjct: 1 METTRLRLEFTDKEGILSQSQKSEGLQRCWLLLKPHHHKTIADLAAYILHAFQLQPSCPHGLLLYMDGYVLPGFESTTILKDKDVISVMKKG--LTLAIRGTNPINLVAEMEAVEQQPVNTGALLLANEEFEKETGGYQSDEPEDESERAEGDDKEEARDVTEEAEDEVREEQLENSLHNPSQENATSKKRKAPEKL 195
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: I1LNF9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 272.322 bits (695), Expect = 2.463e-77 Identity = 165/348 (47.41%), Postives = 230/348 (66.09%), Query Frame = 3 Query: 993 LLGKDDEKSPAKEN-LKFSEECLQAISNNDVEDNVVPIVVRPGHIRFEPLEEENAEQANQYSQISVKTFQWNGITSKKKGQKWGMEKTFLKRNDNSFSHVSSEMVDVN--DKATVTNDMDFDKLMPY-SSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYPNAFEKKTDEEASELP-DTSLYGEDGSLEIDYSSLIDVRLVKLGILN-ATIAIADDNNEKYAQNQDVLTRQPNGSKEAN------------SVSAASP------AQANGAVNVWEEINQALSAKKAELSKEDGWSR-ADSSGRSAWSFRALRRSALGPTMAFLRAQNGI 1961 +L KD ++ P K+N S+ + + ED++VP+ +RPGHIRFEPL+++ +QA Q V+ FQWNGIT+KKKGQKWG E+ ++ D + H S + V +K +N +DFDKL PY +SLPKEGD++AYRL+EL+++WTPEL SFRVG+IS Y+A+SNRI L PV YP F+KK DE+AS + + S Y E+GSLEI+Y+SL DVR+VK G + T+ ++ D K + + +T++ +K N ++ + P A+ NG VNVW+EIN+AL AKKA+LSKEDGWSR +SS +WS RA+R SALGPTMA LR+ NG+ Sbjct: 292 VLEKDGQELPIKDNNCVVSDVHQKPDEESGEEDDIVPVEIRPGHIRFEPLKKDQ-DQAVTQDQFPVEIFQWNGITNKKKGQKWGKERMSFRKQDG-YEHSSQDCPTVRNAEKEQPSNAIDFDKLKPYYTSLPKEGDVIAYRLIELTASWTPELSSFRVGKISRYDAKSNRIWLEPVLEYPFDFKKKIDEDASSVQYNPSPYQENGSLEIEYTSLADVRMVKHGNPDLKTVVVSSDAWVKTTKATNDITKEKLAAKATNGSTDEKLAADQTTMGSCQPERGHITAKENGEVNVWDEINEALKAKKAKLSKEDGWSRGGESSSTRSWSHRAMRCSALGPTMALLRSNNGL 637 HSP 2 Score: 145.206 bits (365), Expect = 4.273e-33 Identity = 83/164 (50.61%), Postives = 107/164 (65.24%), Query Frame = 3 Query: 75 ETARLRLVFEDPNILSKSQKQQGLKRSWFILKPQHQTIFDLSSDLLHIFDLQKSCPNGLILSMDGFVLPPFEPTCILKDKDIVSVKMKGGKSTEIIKAGNGMNYLEELETMERLPVNTGVKHLANEEFDKETGGYKSELEEDEQELAPLEDRAQVESTPIENMV 566 ET RLR+VFED +LSKS+K+QGLKR WF+LKPQH I D++S LL+ F L ++CP+G++LSMDGFVLP FE TCILKDKDIV VK KG ST+ K E +++E LP ++ L E +ET +K + D+Q LED VES N+V Sbjct: 3 ETVRLRVVFEDRGMLSKSKKKQGLKRCWFLLKPQHTAISDVASHLLNTFRLHRTCPHGIVLSMDGFVLPSFESTCILKDKDIVCVKRKGSVSTDDNKPAMLPPAACENQSIE-LPKLLTIEGLQEESGGEETMSHK---DGDDQ----LEDAVYVESESDRNVV 158
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: A0A0B2SCB2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014417 PE=4 SV=1) HSP 1 Score: 272.322 bits (695), Expect = 2.463e-77 Identity = 165/348 (47.41%), Postives = 230/348 (66.09%), Query Frame = 3 Query: 993 LLGKDDEKSPAKEN-LKFSEECLQAISNNDVEDNVVPIVVRPGHIRFEPLEEENAEQANQYSQISVKTFQWNGITSKKKGQKWGMEKTFLKRNDNSFSHVSSEMVDVN--DKATVTNDMDFDKLMPY-SSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYPNAFEKKTDEEASELP-DTSLYGEDGSLEIDYSSLIDVRLVKLGILN-ATIAIADDNNEKYAQNQDVLTRQPNGSKEAN------------SVSAASP------AQANGAVNVWEEINQALSAKKAELSKEDGWSR-ADSSGRSAWSFRALRRSALGPTMAFLRAQNGI 1961 +L KD ++ P K+N S+ + + ED++VP+ +RPGHIRFEPL+++ +QA Q V+ FQWNGIT+KKKGQKWG E+ ++ D + H S + V +K +N +DFDKL PY +SLPKEGD++AYRL+EL+++WTPEL SFRVG+IS Y+A+SNRI L PV YP F+KK DE+AS + + S Y E+GSLEI+Y+SL DVR+VK G + T+ ++ D K + + +T++ +K N ++ + P A+ NG VNVW+EIN+AL AKKA+LSKEDGWSR +SS +WS RA+R SALGPTMA LR+ NG+ Sbjct: 292 VLEKDGQELPIKDNNCVVSDVHQKPDEESGEEDDIVPVEIRPGHIRFEPLKKDQ-DQAVTQDQFPVEIFQWNGITNKKKGQKWGKERMSFRKQDG-YEHSSQDCPTVRNAEKEQPSNAIDFDKLKPYYTSLPKEGDVIAYRLIELTASWTPELSSFRVGKISRYDAKSNRIWLEPVLEYPFDFKKKIDEDASSVQYNPSPYQENGSLEIEYTSLADVRMVKHGNPDLKTVVVSSDAWVKTTKATNDITKEKLAAKATNGSTDEKLAADQTTMGSCQPERGHITAKENGEVNVWDEINEALKAKKAKLSKEDGWSRGGESSSTRSWSHRAMRCSALGPTMALLRSNNGL 637 HSP 2 Score: 145.206 bits (365), Expect = 4.273e-33 Identity = 83/164 (50.61%), Postives = 107/164 (65.24%), Query Frame = 3 Query: 75 ETARLRLVFEDPNILSKSQKQQGLKRSWFILKPQHQTIFDLSSDLLHIFDLQKSCPNGLILSMDGFVLPPFEPTCILKDKDIVSVKMKGGKSTEIIKAGNGMNYLEELETMERLPVNTGVKHLANEEFDKETGGYKSELEEDEQELAPLEDRAQVESTPIENMV 566 ET RLR+VFED +LSKS+K+QGLKR WF+LKPQH I D++S LL+ F L ++CP+G++LSMDGFVLP FE TCILKDKDIV VK KG ST+ K E +++E LP ++ L E +ET +K + D+Q LED VES N+V Sbjct: 3 ETVRLRVVFEDRGMLSKSKKKQGLKRCWFLLKPQHTAISDVASHLLNTFRLHRTCPHGIVLSMDGFVLPSFESTCILKDKDIVCVKRKGSVSTDDNKPAMLPPAACENQSIE-LPKLLTIEGLQEESGGEETMSHK---DGDDQ----LEDAVYVESESDRNVV 158
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: A0A0A0KTI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598010 PE=4 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 1.204e-75 Identity = 140/277 (50.54%), Postives = 189/277 (68.23%), Query Frame = 3 Query: 1152 AEQANQYSQ--ISVKTFQWNGITSKKKGQKWGMEKT--FLKRNDNSFS----HVSSEMVDVNDKATVTNDMDFDKLMPYSSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYPNAFEKKTDEEASELPDTSLYGEDGSLEIDYSSLIDVRLVKLGILNATIAIADDNNEKYAQNQDVLTRQ-PNGSKEA-NSVSAASPAQANGAVNVWEEINQALSAKKAELSKEDGWSRADSSGRSAWSFRALRRSALGPTMAFLRAQ 1952 +QA Q Q +T WNGIT+KKKGQKWG EKT + + N N S + SE V + FD+L PY+ LP+EGDL+AYRL+ELSSTWTPE+ SFR G++S Y+ ESNRIML PVP YP +K+ DE++ PDT+ YGEDGSL+ID++SL+D+R+++ G L+++ + A NQ++ ++Q SK N+V A + Q NG V+ W+EI++ALSAKK ELSK +GW++ DSSGR +WS+RALR SALGPTMA LR+Q Sbjct: 272 TDQAGQEKQNHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTCLPQEGDLIAYRLIELSSTWTPEISSFRAGKVSWYDTESNRIMLIPVPEYPLPVKKEIDEDSELQPDTTPYGEDGSLKIDFASLVDLRIIRQGNLDSS---------RTAVNQEITSKQIAESSKHVHNNVDANNTRQGNGKVSAWDEISEALSAKKVELSKNNGWNQEDSSGRKSWSYRALRGSALGPTMALLRSQ 539 HSP 2 Score: 166.777 bits (421), Expect = 7.410e-41 Identity = 91/171 (53.22%), Postives = 114/171 (66.67%), Query Frame = 3 Query: 72 METARLRLVFEDPNILSKSQKQQGLKRSWFILKPQHQTIFDLSSDLLHIFDLQKSCPNGLILSMDGFVLPPFEPTCILKDKDIVSVKMKGGKSTEIIKAGNGMNYLEELETMERLPVNTGVKHLANEEFDKETGGYKSELEEDEQELAPLEDRAQVESTPIENMVSKKRKA 584 ME RLR+ F+D ++L+ S GL RSW +LKP +TI DLSS +L IF L +CPNG+ILSMDGFVLPPFE CILKDKDIV VK K K+T + G G +E E ER PV+ GVK LA++EF+ E+ GY+S+ EEDE QV++ P+ VSKKRKA Sbjct: 2 MEAVRLRVSFKDKDLLTDSL--TGLSRSWIVLKPHLRTISDLSSYILSIFCLHDACPNGVILSMDGFVLPPFESVCILKDKDIVRVKKKKSKATIL---GGGNRLIETEEFRERKPVDKGVKLLADKEFENESNGYESQSEEDEANAT-----LQVKAVPVGKKVSKKRKA 162
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: M0TWQ4_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 6.737e-71 Identity = 133/296 (44.93%), Postives = 199/296 (67.23%), Query Frame = 3 Query: 1077 DVEDNVVPIVVRPGHIRFEPLEEENAEQANQYSQISVKTFQWNGITSKKKGQKWGMEKTFLKRNDNSFSHVS-SEMVDVNDKATVTNDMDFDKLMPYSSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYP-NAFEKKTDEEASELPDTSLYGEDGSLEIDYSSLIDVRLVKLGILNATIAIADDNNEKYAQNQDVLTRQPNGSKEANSVSAASPAQANGAVNVWEEINQALSAKKAELSKEDGWSRADSSGRSAWSFRALRRSALGPTMAFLRAQNG 1958 ++E+ +VP++VRPGHIRFEP++ + E N S V+T QWNG TSKKKGQKWG EKT K++D+ + + + +E + + V + ++F+ L P + LP+EGD++ YRLVELSS+W PEL SFRVG++S Y++ S +I+L P+P YP ++ EKK EE+++ PD++LY EDGSLEI+Y+SL+DVRL+K G + + + + N D+ +AN +A+P + W++I+QALS +KA+L + D W+ S ++WS+RALR SALGPT+A LR NG Sbjct: 321 EIEEEIVPVIVRPGHIRFEPIDG-DGEHDNTQSNGPVETLQWNGTTSKKKGQKWGREKTLSKKSDDDYCNGAFNENMITEEGEHVDDHINFESLFPLTRLPEEGDILVYRLVELSSSWCPELSSFRVGKVSSYDSISMKIVLLPIPEYPISSQEKKDAEESAQEPDSTLYKEDGSLEIEYTSLVDVRLLK-GHDSDNLHNEKSKEKAQSNNWDL------ALVDANPRHSAAPLVESRPTMGWDQIDQALSERKAQLQQTDTWA-IKGSTTASWSYRALRGSALGPTLALLRGTNG 607 HSP 2 Score: 122.479 bits (306), Expect = 1.036e-25 Identity = 65/175 (37.14%), Postives = 111/175 (63.43%), Query Frame = 3 Query: 72 META-RLRLVFEDPNILSKSQKQQGLKRSWFILKPQHQTIFDLSSDLLHIFDLQKSCPNGLILSMDGFVLPPFEPTCILKDKDIVSVKMKGGKSTEIIKAGNGMNYLEELETMERLPVNTGVKHLANEEFDKETGGYKSELEEDEQELAPLEDRAQVESTPIENMVSKKRKARDK 593 ME A RLR+ F+D +L+K+Q+ +GL R W +L P+ T+ D+++ L+ F L SCP+G++LSMD FVLPPFE + I +DKDIV VK K K+ ++++ ++++ + +E+ P+ +G + L ++F ++ KS+ ED E+ + Q+ S+ E ++ +KRK DK Sbjct: 1 MEDAVRLRVEFDDHRVLTKTQRLEGLCRCWLLLPPELSTVSDVATHLVRAFALHLSCPHGVLLSMDEFVLPPFESSSIFRDKDIVRVKKKVAKTKQLLEICGDAYHIQDSKIVEKQPITSGNELLNIKDFHEDLELCKSKKGEDACEVEGNTTKRQILSSE-ETILKRKRKQSDK 174 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013641 ID=g.arboreum_cottongen_reftransV1_0013641; Name=g.arboreum_cottongen_reftransV1_0013641; organism=Gossypium arboreum; type=contig; length=2146bpback to top |