g.arboreum_cottongen_reftransV1_0013641, g.arboreum_cottongen_reftransV1_0013641 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013641
Unique Nameg.arboreum_cottongen_reftransV1_0013641
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length2146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0013641:1..2146 .
Chr10:32082330..32087719 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: A0A059B115_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02474 PE=4 SV=1)

HSP 1 Score: 451.825 bits (1161), Expect = 9.434e-146
Identity = 295/658 (44.83%), Postives = 405/658 (61.55%), Query Frame = 3
Query:   72 METARLRLVFEDPNILSKSQKQQGLKRSWFILKPQHQTIFDLSSDLLHIFDLQKSCPNGLILSMDGFVLPPFEPTCILKDKDIVSVKMKGGKSTEIIKAGNGMNYLEELETMERLPVNTGVKHLANEEFDKETGGYKSELEEDE--QELAPLEDRAQVESTPIENMVSKKRKARDKLPXXXXXXXXXXXXXXYPVSGDDGIDVRPRXXXXXXXXXXXTNDKVVGKDKPADIQGEPENSSSPEIDETGDNKTNLGRSSQLQNTGKG-SADELITTTEVXXXXXXXXXXXXXXXXXXXEQAKLVKEKLQSKEL------LGKDDEKSPAKENLKFSEEC---------------LQAISNNDVEDNVVPIVVRPGHIRFEPLEEENAEQANQYSQIS-VKTFQWNGITSKKKGQKWGMEK--TFLKRNDNSFSHVSSEMVDVNDKATVTNDMDFDKLMPYSSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYPNAFEKKTDEEASELPDTSLYGEDGSLEIDYSSLIDVRLVKLGILNAT-IAIADDNNEKYAQNQDVLTRQPNGSKEANSVSAASPAQANGAVNVWEEINQALSAKKAELSKEDGWSRADSSGRSAWSFRALRRSALGPTMAFLRAQNGI 1961
            M+  R+RL F+D  +LSK Q+++GL RSW +L+P H TI DL++ +++ FDL  SCPNGL+LSMDG+VLPPFE T ILKDKDIV VK K G S + IK  +  + LEE+E +E+ PV TG+K LANEEF KE GGY+SE EEDE  Q    L +    E T   N+VSKKRKA  KL  S++KKSKL+  +   V G   ID  P + +       + +D      K +  Q  P+ S + E + T    T   +S Q +N G    A +  +  ++    +R  + K+   R +R+  +   EK + ++L      LGK   + P K+  +FS+E                L  +  N+  +++VP+V+RPGHIRFEPL EE+ +Q  Q SQ+S ++TF+WNGITSKKKGQKWG EK  ++   ++ + +  SS + +V  ++ +T+  D DKL PY   P+EGD+VAYR++ELSS+W PEL SFRVG+IS Y+  SN+I+L PV  Y    E           D SLY EDGSLE+D+SSLIDVR+VK G  N+          E  A +Q+    + NGS +    +   P +ANG V+VWEEI++ALSAKKA+LS++D W+   SSGRS+WSFRALR SALGPTMA LRAQNG+
Sbjct:    1 MDGVRVRLWFDDRRVLSKPQRKEGLNRSWVLLQPHHSTIADLAAHVVNAFDLWDSCPNGLVLSMDGYVLPPFESTSILKDKDIVGVKKKQGTSRDTIKLCDVEDALEEIEFVEKQPVQTGLKLLANEEFVKEAGGYESESEEDEHGQSHGSLNE----EDTSNNNVVSKKRKASKKLGGSKRKKSKLSGVECPKVPG-SVIDDTPVEKEILQNDGATIDD-----SKSSSGQATPDKSITHEDEVT---ITPAAKSQQQENDGGSEGATDTPSKPKLPSRSARRKKAKRRWLREMRQIGQKEVEKNEYRQLPNKKQSLGKKYRQLPGKKESEFSKEHEQQHQSQTFTQEHQPLNHVYENNTNEDIVPVVIRPGHIRFEPL-EEDVDQDVQKSQVSLLQTFEWNGITSKKKGQKWGKEKAGSWQWTDNKNLNQESSLVTNVVAESPLTDLGDIDKLPPYGLSPQEGDIVAYRVIELSSSWCPELTSFRVGKISSYHQRSNKILLVPVGEYALDLEN---------IDKSLYKEDGSLEVDFSSLIDVRIVKYGKSNSVEQGTGAGGVEVAAGDQNA---KSNGSTDNIGEATPGPTKANGKVDVWEEISEALSAKKAQLSQQDNWTMKQSSGRSSWSFRALRGSALGPTMALLRAQNGV 632          
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: W9RCG4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027672 PE=4 SV=1)

HSP 1 Score: 452.595 bits (1163), Expect = 1.233e-145
Identity = 306/656 (46.65%), Postives = 415/656 (63.26%), Query Frame = 3
Query:   84 RLRLVFEDPNILSKSQKQQGLKRSWFILKPQHQTIFDLSSDLLHIFDLQKSCPNGLILSMDGFVLPPFEPTCILKDKDIVSVKMKGG-KSTEIIKAGNGMNYLEELETMERLPVNTGVKHLANEEFDKETGGY----------KSE------LEEDEQELAPLEDRA-QVESTPIENMVSKKRKARDKLPXXXXXXXXXXXXXXYPVSG---DDGIDVRPRXXXXXXXXXXXTNDKVVGKDKPADIQGEPENSSSPEIDETGDN----KTNLGRSSQLQNTGKGSADELITTTEVXXXXXXXXXXXXXXXXXXXEQAKLVKEKLQSKELLGKDDEKSPAKENLKFSEECLQAISNNDVED-NVVPIVVRPGHIRFEPLEEENAEQANQYSQISVKTFQWNGITSKKKGQKWGMEKT-FLKRNDNSFSHV-SSEMVDVNDKATVTNDMDFDKLMPYSSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYPNAFEKKTDEEASELPDTSLYGEDGSLEIDYSSLIDVRLVKLGILNATIAIADDNNEKYAQNQD--VLTRQPNGSKEANSVSAASPAQANGAVNVWEEINQALSAKKAELSKEDGWSRADSSGRSAWSFRALRRSALGPTMAFLRAQNGI 1961
            RLRLVFED  +L+KSQ+ +GLKRSW +LKP H+TI +++  LL +FD+  +C +GL+LSMDGFVLPPFE T ILKDKDI+ VK K G  ST+II  G+G    E  E  E      G+K LA EEF +ETGGY          KSE        E E+++   + +A Q++++  +  VS KRKA  KL  S  +K +  +A     SG   D   ++ P+K +SSH+  +   +  V  DK  D  GE +  S+ E DE  +N      +  RS + Q  GK S     T   +KK PSRS RRK+AKR+WL E+AK  + +L   +L   D+E+S AK+N    E   +    +D ED +VVP+VVRPGHIRFE   + +A+Q  +  +IS++ FQWNGITSK+KGQKWG EKT F KR+D    +  SSEM+ + ++  V   +DF+KL P +SLP+EGD VAYRL+ELS +WTPEL  FRVG+IS Y+ +S+RI L  VP YP  FE++ DE ++  P+TS+Y EDGSLE+DYSSL+DVR++K G ++A  ++    ++  + +Q     +RQ    KE      A+P Q NG VNVW+EI +ALSAKKA+LS+ED W++   S   +WSFRALR  ALGPTMA LRAQN I
Sbjct:    6 RLRLVFEDCKMLTKSQRMEGLKRSWVLLKPHHETISEVADHLLRVFDIDDACSDGLVLSMDGFVLPPFESTSILKDKDIIRVKKKKGPSSTDIIGVGDGRKSFEVEEVAEEQDAVPGMKLLATEEFARETGGYESESEEEEPAKSEDLHIDNTPEPEKKVVSKKRKALQLDNSLEKKEVSNKRKASKKLKRSNDRKKRKKSATVEECSGTPEDVQNEIPPKKDESSHQHILLLENSPVKNDKSPDTDGELDYLSTTESDERTNNINVTTPSEKRSCEPQENGKKSVASSHTHDGIKKGPSRSTRRKRAKRQWLIERAKKKENELHQTKLQKTDNEQSSAKDNCITEEH--KKRDKSDYEDGDVVPVVVRPGHIRFESSGKVDADQPVRQPEISMENFQWNGITSKRKGQKWGKEKTGFHKRSDQKRRNQDSSEMMIIEEETNVIGHVDFNKLKPCTSLPQEGDTVAYRLIELSPSWTPELSFFRVGKISKYDPKSDRITLVQVPEYPIVFEEQGDEASAAKPETSIYKEDGSLEVDYSSLVDVRIIKHGNVSAAKSVTAGVSQVASGDQGGASCSRQ-KSYKEPKGKEPAAPRQENGKVNVWDEICEALSAKKAQLSQEDNWTKKGGSSSGSWSFRALRGGALGPTMARLRAQNEI 658          
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: A0A067K4G9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17837 PE=4 SV=1)

HSP 1 Score: 444.121 bits (1141), Expect = 5.719e-143
Identity = 300/658 (45.59%), Postives = 403/658 (61.25%), Query Frame = 3
Query:   72 METARLRLVFEDPNILSKSQKQQGLKRSWFILKPQHQTIFDLSSDLLHIFDLQKSCPNGLILSMDGFVLPPFEPTCILKDKDIVSVKMKGGKSTEIIKAGNGMNYLEELETMERLPVNTGVKHLANEEFDKETGGYKSELEEDEQELAPLEDRAQVESTPIENMVSKKRKARDKLPXXXXXXXXXXXXXXYPVSGDDGIDVRPRXXXXXXXXXXXTNDKVVGKDKPADIQGEPENSSSPEIDETGDNKTNLGRSSQL---QNTGKGSADELITTTEVXXXXXXXXXXXXXXXXXXXEQAKLVKEKLQSKELLGKDDEKS------------------------PAKENLKFSEECLQAISNNDVEDNVVPIVVRPGHIRFEPLEEENAEQANQYSQISVKTFQWNGITSKKKGQKWGMEK-TFLKRND-NSFSHVSSEMVDVNDKATVTNDMDFDKLMPYSSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYPNAFEKKT-DEEASELPDTSLYGEDGSLEIDYSSLIDVRLVKLGILNATIAIADDNNEKYAQNQDVLTRQPNGSKEANSVSAASPAQANGAVNVWEEINQALSAKKAELSKEDGWSRADSSGRSAWSFRALRRSALGPTMAFLRAQN 1955
            MET RLRL F+   +LSKSQK   LKR W +LKPQH+TI DLS  LLH FDLQ   PNGL+LSM+GF LPPFE T ILKDKDI+ V+  G  STEI+  G+G+N LE +E +E  PV  G+  LANEEF+KE+GGY+SE  EDE +   +ED   VE++P    V+KKRKA  +L S ++KK + ++ +K  ++ ++                   N K  G              S+ ++DE   +   L  + +L   Q  G GS D   T  + KKLPSRSARRKKAKR +LR + K  +E+LQ ++L  K DE+S                        P +E  K  E+  Q   + D E++VVPIV+RPGHIRFEPL    + QA + +QI ++TF+WNGITSKKKGQKWG EK T  K ND  + +   S+M+++  +  V + ++F+KL  Y++LPKEGD++AYRL++LSS+WTPEL S+ VG+IS Y  E NR+ L PVP YP   E++  D+ +  L +      DGSL ID+SSL +VRL+  G L +  ++A   +     +QD      N S   N     +  Q NGAV+ WE+INQAL+AKKAELS+ED W++ +SSGR  WS++ALR SALGPTMA LRAQN
Sbjct:    1 METVRLRLEFD--QVLSKSQKSLNLKRCWILLKPQHRTISDLSDYLLHAFDLQNDFPNGLLLSMEGFALPPFESTSILKDKDIIRVEKNGSVSTEIVMVGDGVNSLEVVEIVETQPVVAGMNLLANEEFEKESGGYQSEEVEDEPK--QVEDAVHVENSPEVKTVTKKRKASKELKSPKRKKKRSSSNEKRVLAVEE-------------------NGKQNG------------TLSAAKVDERIKSSQALPTAKRLSQHQENGNGSVDASPTPDQTKKLPSRSARRKKAKRIYLRRKLKAEREELQRRQLHVKSDEQSSEEDSQGFSQESDEEGNREVSEQMPERETNKLEEDPQQPDQDGDEEEDVVPIVIRPGHIRFEPLSTVGSNQAVEQNQIPLETFRWNGITSKKKGQKWGKEKITSWKGNDYKNVNQECSKMLNIEARH-VHDRINFEKLEYYTTLPKEGDVIAYRLLKLSSSWTPELSSYGVGKISRYEIEKNRVGLVPVPKYPMIPEEEMGDDTSGGLSEAYPCARDGSLWIDFSSLCEVRLISQGNLKSVKSVAAGVD---GGDQD------NRSNLRNDNENHASVQENGAVDAWEQINQALNAKKAELSQEDNWNKTESSGRRPWSYKALRGSALGPTMALLRAQN 613          
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: V4TIJ0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030867mg PE=4 SV=1)

HSP 1 Score: 433.335 bits (1113), Expect = 9.757e-138
Identity = 318/703 (45.23%), Postives = 428/703 (60.88%), Query Frame = 3
Query:   72 METARLRLVFEDPNILSKSQKQQGLKRSWFILKPQH-QTIFDLSSDLLHIFDLQKSCPNGLILSMDGFVLPPFEPTCILKDKDIVSVKMKGGKSTEIIKAGNGMNYLEELETMERLPVNTGVKHLANEEFDKETGGYKSELEEDEQELAPLEDRAQVESTPIENMVSKKRKARDKLPXXXXXXXXXXXXXXYPVSGDDGIDVRPRXXXXXXXXXXXTNDKVVGKDKPADIQGEPENSSSPEIDETGDNKT----NLGRSSQLQNTGKGSADELITTTEVXXXXXXXXXXXXXXXXXXXEQAKLVKEKLQSKELLGK--------------DDEKSP-----AKENLKFSEECLQAISNNDVEDNVVPIVVRPGHIRFEPLEEENAEQANQYSQISVKTFQWNGITSKKKGQKWGMEKT-FLKRNDNSFSHVSSEMVDVNDKATVTNDMDFDKLMPYSSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYPNAFEKKTDEEASELPDTSLYGEDGSLEIDYSSLIDVRLVKLGILNATIAIADDN-----NEKYAQNQDVLTR---------------------------QPNG-----------SKEANSVSAASPA--QANGAVNVWEEINQALSAKKAELSKEDGWSRADSSGRSA---WSFRALRRSALGPTMAFLRAQNGI 1961
            ME  R+R+VFE  +ILS++QK++GLK+SW + KP+H +TI DL+  LL IF L  S P+GL+LSMDGFVLPPFE T + KD D+V V+ K   S+E+I    G + L+ ++ +++ PV TG+K LANEEF +E G   SE EED+ E         +E TP  N  SKKRKA  KL  S++KKSKL+TA++ PV  +D  +V           + S +  ++ KDK +D+QG  E   +PE+ ET +  +    +  R SQLQ  GKG+ D   T    KK PSRSARRKKAKR+WLREQAK+ K +L  K+L  K              D+ + P      K+N + S+ C Q   N D +D+VVP+V+RPGHIRFEPL + +  Q  Q +Q  ++T+QWNGITSKKKGQKWG +K  F K++        SEM     + ++  DM+F+KL PY SLPKEGD++AYRL+EL+S+WTPE  SFRVG+IS Y++++N+I+L PVP YP AFEKKTDE    L   +LYGEDGSL+ID+S L+DVR++K G     + + D +     NE +  +QDV+                             Q NG           +   NS    SPA  Q NG +N WEEIN ALSAKKAELS  D  S  + S +S+    S++ALR SALGPTMAFLR++NG+
Sbjct:    2 MEKVRVRVVFEGQHILSEAQKKEGLKKSWILFKPKHLKTISDLADYLLRIFHLHHSSPHGLVLSMDGFVLPPFESTAVFKDNDVVCVRRKREASSELITLDGGADALDAVQIVKQ-PVQTGLKLLANEEFYQEKGSRDSESEEDDHEKG-------LEQTPDVNKSSKKRKASKKLQGSKRKKSKLSTAEETPVVFEDVQNV-----CEVKSGRSSRDRSLLKKDKSSDVQGNQEKWRTPELGETSNCISKCVPDAKRFSQLQENGKGNVDVSSTPVGTKKFPSRSARRKKAKRQWLREQAKIEKMELHQKQLNSKVILQSPNKDGQILSDEHQQPDPVSQGKDNKRLSDGCQQPGPNGDADDDVVPVVIRPGHIRFEPLGKVDDIQTVQQNQTPLETYQWNGITSKKKGQKWGRDKAAFSKKSIYENFDQFSEMPSFEKEISIGKDMEFEKLPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDENVPALQSETLYGEDGSLKIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGDQDVVMNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNKEKSPAHTQENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHRLSYKALRSSALGPTMAFLRSENGL 691          
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: V4VG05_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030867mg PE=4 SV=1)

HSP 1 Score: 430.254 bits (1105), Expect = 1.385e-136
Identity = 318/703 (45.23%), Postives = 428/703 (60.88%), Query Frame = 3
Query:   72 METARLRLVFEDPNILSKSQKQQGLKRSWFILKPQH-QTIFDLSSDLLHIFDLQKSCPNGLILSMDGFVLPPFEPTCILKDKDIVSVKMKGGKSTEIIKAGNGMNYLEELETMERLPVNTGVKHLANEEFDKETGGYKSELEEDEQELAPLEDRAQVESTPIENMVSKKRKARDKLPXXXXXXXXXXXXXXYPVSGDDGIDVRPRXXXXXXXXXXXTNDKVVGKDKPADIQGEPENSSSPEIDETGDNKT----NLGRSSQLQNTGKGSADELITTTEVXXXXXXXXXXXXXXXXXXXEQAKLVKEKLQSKELLGK--------------DDEKSP-----AKENLKFSEECLQAISNNDVEDNVVPIVVRPGHIRFEPLEEENAEQANQYSQISVKTFQWNGITSKKKGQKWGMEKT-FLKRNDNSFSHVSSEMVDVNDKATVTNDMDFDKLMPYSSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYPNAFEKKTDEEASELPDTSLYGEDGSLEIDYSSLIDVRLVKLGILNATIAIADDN-----NEKYAQNQDVLTR---------------------------QPNG-----------SKEANSVSAASPA--QANGAVNVWEEINQALSAKKAELSKEDGWSRADSSGRSA---WSFRALRRSALGPTMAFLRAQNGI 1961
            ME  R+R+VFE  +ILS++QK++GLK+SW + KP+H +TI DL+  LL IF L  S P+GL+LSMDGFVLPPFE T + KD D+V V+ K   S+E+I    G + L+ ++ +++ PV TG+K LANEEF +E G   SE EED+ E         +E TP  N  SKKRKA  KL  S++KKSKL+TA++ PV  +D  +V           + S +  ++ KDK +D+QG  E   +PE+ ET +  +    +  R SQLQ  GKG+ D   T    KK PSRSARRKKAKR+WLREQAK+ K +L  K+L  K              D+ + P      K+N + S+ C Q   N D +D+VVP+V+RPGHIRFEPL ++   Q  Q +Q  ++T+QWNGITSKKKGQKWG +K  F K++        SEM     + ++  DM+F+KL PY SLPKEGD++AYRL+EL+S+WTPE  SFRVG+IS Y++++N+I+L PVP YP AFEKKTDE    L   +LYGEDGSL+ID+S L+DVR++K G     + + D +     NE +  +QDV+                             Q NG           +   NS    SPA  Q NG +N WEEIN ALSAKKAELS  D  S  + S +S+    S++ALR SALGPTMAFLR++NG+
Sbjct:    2 MEKVRVRVVFEGQHILSEAQKKEGLKKSWILFKPKHLKTISDLADYLLRIFHLHHSSPHGLVLSMDGFVLPPFESTAVFKDNDVVCVRRKREASSELITLDGGADALDAVQIVKQ-PVQTGLKLLANEEFYQEKGSRDSESEEDDHEKG-------LEQTPDVNKSSKKRKASKKLQGSKRKKSKLSTAEETPVVFEDVQNV-----CEVKSGRSSRDRSLLKKDKSSDVQGNQEKWRTPELGETSNCISKCVPDAKRFSQLQENGKGNVDVSSTPVGTKKFPSRSARRKKAKRQWLREQAKIEKMELHQKQLNSKVILQSPNKDGQILSDEHQQPDPVSQGKDNKRLSDGCQQPGPNGDADDDVVPVVIRPGHIRFEPLVDDI--QTVQQNQTPLETYQWNGITSKKKGQKWGRDKAAFSKKSIYENFDQFSEMPSFEKEISIGKDMEFEKLPPYISLPKEGDVIAYRLIELTSSWTPEPSSFRVGKISWYDSDTNKILLAPVPEYPLAFEKKTDENVPALQSETLYGEDGSLKIDFSLLLDVRIIKHGEKANEVHVGDQDFVTNFNEVHLGDQDVVMNFNVHVGDRDVVMNLRDDRKHGKAHAPAQGNGEVRLGDQDAVSNVRDNSNKEKSPAHTQENGKLNAWEEINLALSAKKAELSHVDDQSAKERSKQSSGHRLSYKALRSSALGPTMAFLRSENGL 689          
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: A0A059B224_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02474 PE=4 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 9.669e-102
Identity = 229/538 (42.57%), Postives = 320/538 (59.48%), Query Frame = 3
Query:   72 METARLRLVFEDPNILSKSQKQQGLKRSWFILKPQHQTIFDLSSDLLHIFDLQKSCPNGLILSMDGFVLPPFEPTCILKDKDIVSVKMKGGKSTEIIKAGNGMNYLEELETMERLPVNTGVKHLANEEFDKETGGYKSELEEDE--QELAPLEDRAQVESTPIENMVSKKRKARDKLPXXXXXXXXXXXXXXYPVSGDDGIDVRPRXXXXXXXXXXXTNDKVVGKDKPADIQGEPENSSSPEIDETGDNKTNLGRSSQLQNTG--KGSAD-----ELITTTEVXXXXXXXXXXXXXXXXXXXEQAKLVKEKLQSKELLGKDDEKSPAKENLKFSEEC---------------LQAISNNDVEDNVVPIVVRPGHIRFEPLEEENAEQANQYSQIS-VKTFQWNGITSKKKGQKWGMEK--TFLKRNDNSFSHVSSEMVDVNDKATVTNDMDFDKLMPYSSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYPNAFEKKTDEEASELPDTSLYGEDGSLEI 1604
            M+  R+RL F+D  +LSK Q+++GL RSW +L+P H TI DL++ +++ FDL  SCPNGL+LSMDG+VLPPFE T ILKDKDIV VK K G S + IK  +  + LEE+E +E+ PV TG+K LANEEF KE GGY+SE EEDE  Q    L +    E T   N+VSKKRKA  KL  S++KKSKL+  +   V G   ID  P + +       + +D      K +  Q  P+ S + E + T    T   +S Q +N G  +G+ D     +L + +  +K   R   R+  +      +    ++    K+ LGK   + P K+  +FS+E                L  +  N+  +++VP+V+RPGHIRFEPL EE+ +Q  Q SQ+S ++TF+WNGITSKKKGQKWG EK  ++   ++ + +  SS + +V  ++ +T+  D DKL PY   P+EGD+VAYR++ELSS+W PEL SFRVG+IS Y+  SN+I+L PV  Y    E           D SLY EDGSLE+
Sbjct:    1 MDGVRVRLWFDDRRVLSKPQRKEGLNRSWVLLQPHHSTIADLAAHVVNAFDLWDSCPNGLVLSMDGYVLPPFESTSILKDKDIVGVKKKQGTSRDTIKLCDVEDALEEIEFVEKQPVQTGLKLLANEEFVKEAGGYESESEEDEHGQSHGSLNE----EDTSNNNVVSKKRKASKKLGGSKRKKSKLSGVECPKVPG-SVIDDTPVEKEILQNDGATIDD-----SKSSSGQATPDKSITHEDEVT---ITPAAKSQQQENDGGSEGATDTPSKPKLPSRSARRKKAKRRWLREMRQIGQKEVEKNEYRQLPNKKQSLGKKYRQLPGKKESEFSKEHEQQHQSQTFTQEHQPLNHVYENNTNEDIVPVVIRPGHIRFEPL-EEDVDQDVQKSQVSLLQTFEWNGITSKKKGQKWGKEKAGSWQWTDNKNLNQESSLVTNVVAESPLTDLGDIDKLPPYGLSPQEGDIVAYRVIELSSSWCPELTSFRVGKISSYHQRSNKILLVPVGEYALDLEN---------IDKSLYKEDGSLEV 515          
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: B9HLF5_POPTR (Sphere organelles family protein OS=Populus trichocarpa GN=POPTR_0008s18890g PE=4 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 1.769e-92
Identity = 172/325 (52.92%), Postives = 225/325 (69.23%), Query Frame = 3
Query: 1011 EKSPAKENLKFSEECLQ-----AISNNDVEDNVVPIVVRPGHIRFEPLEEENAEQANQYSQISVKTFQWNGITSKKKGQKWGMEKTF-LKRND-NSFSHVSSEMVDVNDKATVTNDMDFDKLMPYSSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYPNAFEKKTDEEASELPDTSLYGEDGSLEIDYSSLIDVRLVKLGILNATIAIADDNNEKYAQNQDVLTR-QPNGSKEANSVSAASPAQANGAVNVWEEINQALSAKKAELSKEDGWSRADSSGRSAWSFRALRRSALGPTMAFLRAQNGI 1961
            EKSP   + K SEE L+        ++DVE +VVPIV+RPGHIRFEPL++   +QA   + I  ++F WNGITSKKKGQKWG EK    KRND N+F   SS  + + ++  V +  +F++L  Y+SLPKEGD++AYR+VELS +WTPEL S+RVG+IS Y+ ESN ++L  VPGYP   EK  DE ++ LP+TS YGEDGSLEI +S+L +VRLV+ G L +  +I   +NE + ++QD  T   PN + EAN     + AQ N   N WEEINQAL+AKK  LS+EDGW + +SS RS WS++ALR S+LG TMA LRAQN I
Sbjct:  160 EKSPELGSHKLSEEKLREDNQLGEQDSDVEGDVVPIVIRPGHIRFEPLKKGGDDQAVLQNHIPTESFHWNGITSKKKGQKWGKEKAVSCKRNDYNNFRKESSSSLSIEEQTPVYDCTNFEELPLYASLPKEGDVIAYRVVELSLSWTPELSSYRVGKISKYDLESNIVILVQVPGYPVVPEKIDDEASAALPETSPYGEDGSLEIKFSTLHEVRLVRHGNLESAKSIVSGSNEVHVRDQDSGTGFSPNNNHEAN-----TSAQENEKRNPWEEINQALTAKKELLSQEDGWKKTESSSRSPWSYKALRGSSLGRTMALLRAQNEI 479          
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: U5G1G5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s05870g PE=4 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 6.461e-87
Identity = 170/358 (47.49%), Postives = 233/358 (65.08%), Query Frame = 3
Query:  951 EQAKLVKEKLQSKELLGKDDEKSPAKENL------------KFSEECLQ-----AISNNDVEDNVVPIVVRPGHIRFEPLEEE----NAEQANQYSQISVKTFQWNGITSKKKGQKWGMEKTF-LKRND-NSFSHVSSEMVDVNDKATVTNDMDFDKLMPYSSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYPNAFEKKTDEEASELPDTSLYGEDGSLEIDYSSLIDVRLVKLGILNATIAIADDNNEKYAQNQDVLTRQPNGSKEANSVSAASPAQANGAVNVWEEINQALSAKKAELSKEDGWSRADSSGRSAWSFRALRRSALGPTMAFLRAQN 1955
            EQ K  K+    +ELL   +++S  K+N             K SEE L+        ++DVE +VVP+V+RPGHIRFEPL++     +++ A   + +S++ FQWNGITSKKKGQKWG EK    KRND N+F   S   + + ++  V +  +F++   Y+SLPKEGD++AYRLVELSS+WTPEL S+RVG++S Y+ ESN +ML  VP YP   EK  DE +  LP+TS Y +DGSLEI +S+L +VRLV  G + +  ++   +NE + ++QD  T    G K  N+  A + AQ NG  N WEE NQAL+A+KA LS+ED   + +SSGRS WS++ALR SALGPT+A LRAQN
Sbjct:  199 EQLKAEKKAQNKRELLLNINQQSSEKDNQNVSGESPEPGSQKTSEEKLREDNQLGERDSDVEGDVVPVVIRPGHIRFEPLKKGLMLGDSDHAVPQNHVSIERFQWNGITSKKKGQKWGKEKVVSCKRNDYNNFKKESYSSLTIEEQTPVYDCTNFEEFPLYASLPKEGDVIAYRLVELSSSWTPELSSYRVGKVSKYDLESNIVMLAQVPEYPVIPEKIDDEASDALPETSPYQDDGSLEIKFSALFEVRLVHHGNIKSAKSVTGGSNEVHVRDQDSGT----GFKLNNNHEAGTSAQENGKHNPWEETNQALTAQKAWLSQEDSCKKPESSGRSPWSYKALRGSALGPTVALLRAQN 552          

HSP 2 Score: 170.629 bits (431), Expect = 4.719e-42
Identity = 94/172 (54.65%), Postives = 120/172 (69.77%), Query Frame = 3
Query:   72 METARLRLVFEDPNILSKSQKQQGLKRSWFILKPQHQTIFDLSSDLLHIFDLQKSCPNGLILSMDGFVLPPFEPTCILKDKDIVSVKMKGGKSTEIIKAGNGMN-YLEELETMERLPVNTGVKHLANEEFDKETGGYKSELEEDEQELAPLEDRAQVESTPIENMVSKKRKA 584
            MET RLRLV +  N L+ +   +GL++ W +LKPQH+TI DLSS +L +FDL  +CP+GL LSM+GFVLPPFE TCIL DKDIV V  K G +TEIIK  +G+N  L  +E +++ PV TG   LANEEF+KE+  Y+SE E D    A +ED   VE++P    VSKKRKA
Sbjct:    1 METVRLRLVLD--NALTTTT--EGLRKCWILLKPQHKTISDLSSHILQVFDLHNACPSGLFLSMEGFVLPPFESTCILNDKDIVRVIKKDGTATEIIKIDDGLNDSLNVVEIIDKPPVTTGTNLLANEEFEKESDSYESEQEVDVA--AEVED---VENSPEVKAVSKKRKA 163          
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: V7CZV8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G255700g PE=4 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 6.072e-84
Identity = 165/353 (46.74%), Postives = 230/353 (65.16%), Query Frame = 3
Query:  969 KEKLQSKELLGKDDEKSPAKENLKFSEECLQAISNND-------VEDNVVPIVVRPGHIRFEPLEEENAEQANQYSQISVKTFQWNGITSKKKGQKWGMEKTFLKRNDNSFSHVSSEMVDVN--DKATVTNDMDFDKLMPYSSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYPNAFEKKTDEEAS--ELPDTSLYGEDGSLEIDYSSLIDVRLVKLGILNA-TIAIADDNNEKYAQNQDVLTRQPNGSKEANSVSAAS---------PAQANGAVNVWEEINQALSAKKAELSKEDGWS-RADSSGRSAWSFRALRRSALGPTMAFLRAQNGI 1961
            +EKL    +L KD    P K+N     +  Q  S +D        +D++VP+ +RPGHIRFEPL+++  +QA   +Q SV+TFQWNGIT+KKKGQKWG E+    ++D  + H S E   V   +K    N +DFDK  P++ LPKEGD++AYRL+ELS+++TPE+ SFRVG+IS Y+A+SNR+ L  V  YP  F+K+++E+AS  E  D SLY EDGSLEIDY+SL+DVR+VK G  ++ T+ ++ D    + +         +G    +  +  S         PA+ NG VNVWEEIN+ L AKKA+LS+++GWS R +SS   +WS RA+R SALGPTMAFLR+ NG+
Sbjct:  344 QEKLPQTTVLEKDGPVLPIKDNKCVVSDVHQQSSEHDQSDEESEEDDDIVPVEIRPGHIRFEPLKKDQ-DQAVPQNQFSVETFQWNGITNKKKGQKWGKERMSFHKHDE-YEHSSQEYPTVQNAEKEPTINVVDFDKFRPHTGLPKEGDVIAYRLIELSASFTPEISSFRVGKISQYDAKSNRVWLELVLDYPFDFKKESEEDASSFEQSDASLYREDGSLEIDYASLVDVRMVKHGHPDSKTVVVSRD---AFVKPTKATNGSTDGKLTGDQTTVGSCQPEREGLIPAKENGEVNVWEEINKELEAKKAKLSQDNGWSTRGESSSTRSWSHRAMRCSALGPTMAFLRSNNGL 691          

HSP 2 Score: 132.109 bits (331), Expect = 1.259e-28
Identity = 75/162 (46.30%), Postives = 100/162 (61.73%), Query Frame = 3
Query:   75 ETARLRLVFEDPNILSKSQKQQGLKRSWFILKPQHQTIFDLSSDLLHIFDLQKSCPNGLILSMDGFVLPPFEPTCILKDKDIVSVKMKGGKSTE-----IIKAGNGMNYLEELETMERLPVNTGVKHLANEEFDKETGGYKSELEEDEQELAPLEDRAQVES 545
            E  RLR+VFED  +LSKS+K++GL R WF+LKPQH TI D++S L + F L ++CP G+ILSMDGFV+P FE TCILKDKDI+ VK KG   T+     +  A  G   ++       LP       LA E  ++E+G  ++  +ED  +   LED   VES
Sbjct:    3 EMVRLRVVFEDRGMLSKSKKKEGLNRCWFLLKPQHSTISDVASHLHNAFRLHRTCPRGIILSMDGFVIPSFESTCILKDKDIICVKRKGNTWTDDKPAMLSPATRGYESID-------LP-----NVLAIEGLEEESGAEQTMSQEDNDD--KLEDVVCVES 150          
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Match: K7MPD3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.639e-83
Identity = 160/313 (51.12%), Postives = 208/313 (66.45%), Query Frame = 3
Query: 1092 VVPIVVRPGHIRFEPLEEENAEQANQYSQISVKTFQWNGITSKKKGQKWGMEKT-FLKRNDNSFSHVSSEMVDVNDKATVTNDMDFDKLMPYSSLPKEGDLVAYRLVELSSTWTPELCSFRVGEISHYNAESNRIMLTPVPGYPNAFEKKTDEEASELP-DTSLYGEDGSLEIDYSSLIDVRLVKLGI--------LNATIAIADDNNEKYAQNQDVLTRQPNGSK------EANSVSAASP------AQANGAVNVWEEINQALSAKKAELSKEDGWSR-ADSSGRSAWSFRALRRSALGPTMAFLRAQNGI 1961
            + P+ +RPGHIRFEPL+++  +QA   +Q  V+TFQWNGIT+KKKGQKWG E+  F K++    S      V   +K   +N +DFDKL  Y+SLPKEGD++AYRL+EL+++WTPEL SFRVG+IS Y+A+SNRI L PV  YP  F+KK DE+AS +  D S Y EDGSLEI+Y+ L DVR+VK GI        +N T A  D  NEK A       +  NGS       +  +V +  P      A+ NG VNVW++IN+AL AKKA+LS+ED WSR  +SS   +WS RA+R SALGPTMA LR+ NG+
Sbjct:  239 IAPVEIRPGHIRFEPLKKDQ-DQAVPQNQFPVETFQWNGITNKKKGQKWGKERMPFRKQDGYEDSGQDCPTVQNAEKEQTSNVIDFDKLKHYTSLPKEGDVIAYRLIELTASWTPELSSFRVGKISRYDAKSNRIWLEPVLEYPFDFKKKIDEDASSVQYDPSPYQEDGSLEIEYTLLADVRMVKHGIPDLKSDALVNPTKATNDITNEKLA------AKAINGSTGEKLAGDQTTVGSCHPERGHITAKENGEVNVWDKINEALKAKKAKLSQEDCWSRGGESSSTRSWSHRAMRCSALGPTMALLRSNNGL 544          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059B115_EUCGR9.434e-14644.83Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
W9RCG4_9ROSA1.233e-14546.65Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A067K4G9_JATCU5.719e-14345.59Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
V4TIJ0_9ROSI9.757e-13845.23Uncharacterized protein OS=Citrus clementina GN=CI... [more]
V4VG05_9ROSI1.385e-13645.23Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A059B224_EUCGR9.669e-10242.57Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
B9HLF5_POPTR1.769e-9252.92Sphere organelles family protein OS=Populus tricho... [more]
U5G1G5_POPTR6.461e-8747.49Uncharacterized protein OS=Populus trichocarpa GN=... [more]
V7CZV8_PHAVU6.072e-8446.74Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
K7MPD3_SOYBN1.639e-8351.12Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0013641 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 573..593
NoneNo IPR availablePANTHERPTHR15197COILIN P80coord: 1..630
IPR031722Coilin, N-terminal domainPFAMPF15862Coilin_Ncoord: 5..192
e-value: 2.1E-17
score: 63.1
IPR024822CoilinPANTHERPTHR15197:SF0COILINcoord: 1..630

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013641 ID=g.arboreum_cottongen_reftransV1_0013641; Name=g.arboreum_cottongen_reftransV1_0013641; organism=Gossypium arboreum; type=contig; length=2146bp
ATGAAACGAAACGAAGGCCAAATAACAAAGTTCACCTTTGGGTTTTCTTC
AAATTTCCTCAGACTTCGAAAATGGAGACGGCAAGGCTCCGTTTGGTGTT
CGAGGATCCGAACATTCTCAGCAAGTCTCAGAAGCAACAAGGCCTAAAGC
GAAGCTGGTTTATCCTTAAACCCCAACATCAAACCATCTTCGATCTTTCC
TCCGATCTTCTCCACATTTTCGACCTCCAAAAGTCTTGCCCTAATGGCCT
CATACTCTCCATGGATGGCTTTGTTTTGCCACCTTTCGAGCCAACTTGTA
TTTTAAAAGATAAAGATATTGTCAGTGTGAAGATGAAAGGAGGGAAATCG
ACCGAGATTATTAAGGCTGGAAATGGTATGAATTATTTGGAAGAATTGGA
AACAATGGAGCGACTGCCCGTTAATACCGGCGTCAAGCATCTAGCCAATG
AGGAGTTTGATAAGGAAACCGGGGGATACAAAAGCGAACTGGAAGAAGAT
GAGCAAGAACTTGCGCCATTGGAGGATCGAGCACAAGTTGAAAGCACACC
AATTGAAAACATGGTTTCAAAGAAAAGAAAGGCACGGGATAAACTTCCGA
GCTCTAGGAAGAAGAAAAGCAAATTGGCTACTGCTAAAAAATATCCGGTT
TCTGGAGATGATGGAATTGATGTTCGTCCAAGGAAAAGCAAAAGCTCTCA
TAAAAAAAAGGTTTCCACCAATGACAAGGTTGTTGGTAAGGACAAGCCAG
CTGACATTCAGGGAGAACCAGAGAATTCAAGCAGCCCTGAAATTGATGAA
ACTGGTGATAACAAAACCAATCTGGGGAGGTCCTCCCAGCTTCAAAACAC
TGGTAAAGGGAGTGCTGATGAACTTATTACAACTACTGAAGTTAAAAAGC
TCCCTAGCAGAAGTGCCCGACGTAAAAAGGCTAAAAGGCGATGGTTGAGG
GAGCAGGCCAAACTTGTAAAGGAAAAGCTGCAGTCAAAAGAGCTGCTGGG
AAAAGATGATGAGAAATCACCTGCAAAAGAAAATCTCAAATTTTCGGAAG
AATGTCTACAAGCAATTAGCAATAATGATGTTGAGGATAACGTGGTTCCA
ATAGTAGTAAGGCCAGGACATATTCGCTTTGAGCCCCTTGAAGAAGAAAA
TGCTGAGCAAGCTAACCAATACAGTCAAATTTCAGTGAAAACCTTTCAAT
GGAATGGAATAACCAGCAAGAAGAAGGGTCAAAAATGGGGTATGGAGAAA
ACTTTTCTGAAAAGGAATGATAACAGTTTTAGCCATGTGAGTTCAGAAAT
GGTGGATGTTAACGATAAGGCCACTGTAACTAATGACATGGACTTTGACA
AGCTTATGCCCTATTCTAGCTTGCCTAAGGAGGGAGATTTAGTTGCATAT
CGCTTAGTTGAGCTATCTTCAACTTGGACCCCTGAGCTTTGCTCCTTCCG
GGTTGGAGAAATATCACATTATAATGCTGAATCCAACAGGATTATGCTGA
CACCAGTGCCAGGATATCCAAATGCCTTTGAGAAGAAAACAGATGAGGAG
GCTTCTGAACTACCAGATACATCTCTTTACGGAGAAGATGGGTCGTTAGA
GATAGATTATTCCTCTCTAATTGATGTCCGCCTCGTCAAGCTTGGCATTT
TGAATGCCACAATAGCAATTGCTGATGACAACAATGAAAAGTATGCACAA
AATCAAGATGTTTTAACAAGACAACCAAATGGCAGCAAGGAAGCAAACAG
TGTCTCAGCTGCATCTCCTGCACAAGCTAATGGTGCGGTCAATGTATGGG
AAGAAATTAACCAGGCTTTGAGTGCAAAGAAGGCTGAGCTCTCTAAAGAG
GATGGTTGGAGTCGAGCAGATAGTTCAGGTAGGAGCGCCTGGTCTTTTCG
GGCTCTCAGACGCAGTGCTCTTGGCCCAACTATGGCCTTCTTAAGAGCAC
AGAATGGGATCTGAGGAATGGCACCAGCATCAGTTTTAAGTGTAGTCTCT
CAATGTTTTTGAACCTCTGAAAGACGAGAGCAAGGCAATTTTGTTTTGGC
TTTTGCTTTGTCAAGTACACAAAATTTTCAAGTGTCGTCCAAAGTTAACG
TCTTTTTTGTAGCATGCGAAGCCGGTTTTCACTTGTTTTACTACAG
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR031722Coilin_N
IPR024822Coilin