g.arboreum_cottongen_reftransV1_0005499, g.arboreum_cottongen_reftransV1_0005499 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005499 vs. ExPASy TrEMBL
Match: V4KTH4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10006981mg PE=4 SV=1) HSP 1 Score: 616.69 bits (1589), Expect = 0.000e+0 Identity = 318/456 (69.74%), Postives = 368/456 (80.70%), Query Frame = 3 Query: 111 DFGHDKDYILDEAKSHDKNVNESSTSFNAKTNNE--HAVKEVKEESSLSREASQDFDDVDADSHHAGSLS-----HKSGK-NLXXXXXXXXXXXXFSGSCEMKLMNSTH-LVEPVESRKFARFSLQYKQMEEKPEGEDQWVPRFAGHQNLQEREESFFARDQKINCGFVKGPQGYPSTGFDLAEDDVNYISRCHIAVISCIFGNSDRLRTPAGKMVTRSSRKNVCFVMFVDEATMQTLYSEGQTPD-GGFIGLWKIVVVKNLPYTDMRRVGKIPKLLPHRLFPFARYSIWLDSKXXXXXXXXXXXXYFLWRKGHEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQFDFYQADGLKRFDASDPNKLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRRTNPDKPFYLNMFKDCERRAVAKLFRHRSDEKRYIQQRA 1448 D D+D +D SHD +E S + + NE H K+ + S++++ + + DDV A G +S KSGK + + ++ RR SCEMKLMNS+H +VEP+ +RK ARFSLQY + E+KP+GE+QW PRFAGHQ+LQERE+SF +D+KI+CGFVK +G PSTGFDL EDD NYISRCHIAVISCIFGNSDRLR PA KM++R SRKNVCF++FVDE TMQTL +EG PD GFIGLWK+VVVKNLPY DMRRVGKIPKLLPHRLFP ARYSIWLDSKLRLQ DPL +L+YFLWRKGHEYAISNHYDRHC+WEEVAQNKKLNKYNHTVID+QF+FY+ADGL RF+ASDP KLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRR NP+KPF L+MFKDCERR +AKLFRHRS+EKR + Q A Sbjct: 223 DMDPDEDDAID---SHDSQGDEYVDSGHDEDENEEPHKEKDTEVLPSMTKQQNSEKDDVAASKRSLGDISVVSKGGKSGKTSRSDTKRRGRGRRSSGASCEMKLMNSSHQIVEPLNTRKSARFSLQYIETEDKPDGEEQWEPRFAGHQSLQEREDSFLVQDKKIHCGFVKALKGSPSTGFDLTEDDTNYISRCHIAVISCIFGNSDRLRPPANKMISRLSRKNVCFIVFVDEITMQTLSAEGHAPDRAGFIGLWKLVVVKNLPYADMRRVGKIPKLLPHRLFPSARYSIWLDSKLRLQLDPLLILEYFLWRKGHEYAISNHYDRHCLWEEVAQNKKLNKYNHTVIDQQFEFYKADGLTRFNASDPFKLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRRMNPEKPFNLHMFKDCERRKIAKLFRHRSEEKRNLIQAA 675
BLAST of g.arboreum_cottongen_reftransV1_0005499 vs. ExPASy TrEMBL
Match: A0A078I6E7_BRANA (BnaA08g06380D protein (Fragment) OS=Brassica napus GN=BnaA08g06380D PE=4 SV=1) HSP 1 Score: 613.994 bits (1582), Expect = 0.000e+0 Identity = 291/358 (81.28%), Postives = 324/358 (90.50%), Query Frame = 3 Query: 381 SCEMKLMNSTH-LVEPVESRKFARFSLQYKQMEEKPEGEDQWVPRFAGHQNLQEREESFFARDQKINCGFVKGPQGYPSTGFDLAEDDVNYISRCHIAVISCIFGNSDRLRTPAGKMVTRSSRKNVCFVMFVDEATMQTLYSEGQTPD-GGFIGLWKIVVVKNLPYTDMRRVGKIPKLLPHRLFPFARYSIWLDSKXXXXXXXXXXXXYFLWRKGHEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQFDFYQADGLKRFDASDPNKLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRRTNPDKPFYLNMFKDCERRAVAKLFRHRSDEKRYIQQRA 1448 +CEMKL+NS+ +VEP+ +RK ARFSLQY + EEKP+GE+QW PRFAGHQ+LQER++SF A D+KI+CGFVK P+G P+TGFDL EDD NYISRCHIAVISCIFGNSDRLR PA KM++R SRKNVCF++FVDE TMQTL +EG PD GFIGLWK+VVVKNLPY DMRRVGKIPKLLPHRLFP ARYSIWLDSKLRLQ DPL +L+YFLWRKGHEYAISNHYDRHC+WEEVAQNKKLNKYNHTVID+QF+FY+ADGL RF+ASDP KLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRR NPDKPF L+MFKDCERR +AKLFRHRS+EKR + Q A Sbjct: 492 ACEMKLLNSSQPIVEPLNTRKSARFSLQYVENEEKPDGEEQWDPRFAGHQSLQERQDSFLAEDKKIHCGFVKAPKGSPTTGFDLTEDDTNYISRCHIAVISCIFGNSDRLRPPANKMISRLSRKNVCFIVFVDEITMQTLSAEGNAPDRAGFIGLWKLVVVKNLPYADMRRVGKIPKLLPHRLFPSARYSIWLDSKLRLQLDPLLILEYFLWRKGHEYAISNHYDRHCLWEEVAQNKKLNKYNHTVIDQQFEFYKADGLTRFNASDPFKLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRRMNPDKPFNLHMFKDCERRKIAKLFRHRSEEKRNLIQAA 849
BLAST of g.arboreum_cottongen_reftransV1_0005499 vs. ExPASy TrEMBL
Match: Q9SST1_ARATH (Putative uncharacterized protein AT4g09630 OS=Arabidopsis thaliana GN=At4g09630 PE=2 SV=1) HSP 1 Score: 611.298 bits (1575), Expect = 0.000e+0 Identity = 313/469 (66.74%), Postives = 374/469 (79.74%), Query Frame = 3 Query: 90 SRKEDYDDFGHDKDYILDEAK---SHDKNVNESSTSFNAKTNNEHAVKEVKEESSLSREASQDFDDVDADSHHAGS---------LSHKSGKNLXXXXXXXXXXXXFSG-SCEMKLMNSTHLV-EPVESRKFARFSLQYKQMEEKPEGEDQWVPRFAGHQNLQEREESFFARDQKINCGFVKGPQGYPSTGFDLAEDDVNYISRCHIAVISCIFGNSDRLRTPAGKMVTRSSRKNVCFVMFVDEATMQTLYSEGQTPDG-GFIGLWKIVVVKNLPYTDMRRVGKIPKLLPHRLFPFARYSIWLDSKXXXXXXXXXXXXYFLWRKGHEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQFDFYQADGLKRFDASDPNKLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRRTNPDKPFYLNMFKDCERRAVAKLFRHRSDEKRYIQQRAT 1451 ++ ++Y D GHD D + K H+++ E S + + N + A + KE +S+ ++ ++ H A S LS KSGK ++ K++ R +FSG SCEMKL+NS+ + EP++++ FA SLQY QME+KP+GE+QW P+FAGHQ+LQERE+SF ++QKI+CGFVK P+G PSTGFDL EDD NYIS+CHIAVISCIFGNSDRLR PA KMV+ SRK+VCFV+FVDE TMQTL +EGQ PDG GF+GLWK+VVV+NLPYTDMRRVGKIPKLLPHRLF ARYSIWLDSKLRLQ DPL +L+YFLWR+GHEYAISNHYDRHC+WEEVAQNKKLNKYNHTVID+QF+FYQ+DGL RF+ASDP+KLLPSNVPEGSFIVR HTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKL R NPD PF L+MFKDCERR + KLFRHRS+EKR + Q AT Sbjct: 242 TQGDEYVDMGHDGDENEESHKDNHKHNEDGAEESHKDSHRHNEDGAEESHKETASVFLHSTTKHQKIEK-VHGATSKRSRGKSSLLSGKSGKTSQTDAKRRARSHRFSGVSCEMKLLNSSQQIQEPLKTQNFAAPSLQYIQMEDKPDGEEQWEPKFAGHQSLQEREDSFLVQEQKIHCGFVKAPEGLPSTGFDLTEDDANYISKCHIAVISCIFGNSDRLRHPANKMVSSLSRKDVCFVVFVDEITMQTLSAEGQVPDGAGFVGLWKLVVVRNLPYTDMRRVGKIPKLLPHRLFTSARYSIWLDSKLRLQLDPLVILEYFLWREGHEYAISNHYDRHCLWEEVAQNKKLNKYNHTVIDQQFEFYQSDGLTRFNASDPHKLLPSNVPEGSFIVREHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLTRMNPDTPFNLHMFKDCERRKITKLFRHRSEEKRNLIQAAT 709
BLAST of g.arboreum_cottongen_reftransV1_0005499 vs. ExPASy TrEMBL
Match: D7LXB6_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_911228 PE=4 SV=1) HSP 1 Score: 610.142 bits (1572), Expect = 0.000e+0 Identity = 307/457 (67.18%), Postives = 364/457 (79.65%), Query Frame = 3 Query: 90 SRKEDYDDFGHDKDYILDEAKSHDKNVNESSTSFNAKTNNEHAVKEVKEESSLSREASQDFDDVDADSHHAGSLSHKSGKNLXXXXXXXXXXXXFSG-SCEMKLMNSTHLV-EPVESRKFARFSLQYKQMEEKPEGEDQWVPRFAGHQNLQEREESFFARDQKINCGFVKGPQGYPSTGFDLAEDDVNYISRCHIAVISCIFGNSDRLRTPAGKMVTRSSRKNVCFVMFVDEATMQTLYSEGQTPDG-GFIGLWKIVVVKNLPYTDMRRVGKIPKLLPHRLFPFARYSIWLDSKXXXXXXXXXXXXYFLWRKGHEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQFDFYQADGLKRFDASDPNKLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRRTNPDKPFYLNMFKDCERRAVAKLFRHRSDEKRYIQQRAT 1451 ++ ++Y D GHD D + K + ++ + +T + K N + + + + S G+ KSGK ++ K++ R +FSG SCEMKL+NS+ + EP++++ FA SLQY +ME+KP+GE+QW P+FAGHQ+LQERE+SF ++QKI+CGFVK P+G PSTGFDL EDD NYISRCHIAVISCIFGNSDRLR PA KMV+ SRK+VCFV+FVDE TMQTL +EGQ PDG GF+GLWK+VVV+NLPY DMRRVGKIPKLLPHRLFP ARYSIWLDSKLRLQ DPL +L+YFLWR+GHEYAISNHYDRHC+WEEVAQNKKLNKYNHTVID+QF+FYQADGL RF+ASDPNKLLPSNVPEGSFIVR HTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKL R NPD PF L+MFKDCERR + KLFRHRS+EKR + Q AT Sbjct: 242 TQGDEYVDMGHDGDENEESHKDNHRHNEDGATEESHKENASVFLHSTTKHQKIEKIHGATSKRSRGKSSLVGA-GGKSGKTAQTDTKRRARSHRFSGVSCEMKLLNSSQQIKEPLKTQNFAAPSLQYIEMEDKPDGEEQWEPKFAGHQSLQEREDSFLVQEQKIHCGFVKSPEGLPSTGFDLTEDDANYISRCHIAVISCIFGNSDRLRHPANKMVSSLSRKDVCFVVFVDEITMQTLSAEGQVPDGAGFVGLWKLVVVRNLPYADMRRVGKIPKLLPHRLFPSARYSIWLDSKLRLQLDPLVILEYFLWREGHEYAISNHYDRHCLWEEVAQNKKLNKYNHTVIDQQFEFYQADGLTRFNASDPNKLLPSNVPEGSFIVREHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLTRMNPDTPFNLHMFKDCERRKITKLFRHRSEEKRNLIQAAT 697
BLAST of g.arboreum_cottongen_reftransV1_0005499 vs. ExPASy TrEMBL
Match: A0A061FIR6_THECC (Uncharacterized protein isoform 5 OS=Theobroma cacao GN=TCM_036343 PE=4 SV=1) HSP 1 Score: 609.757 bits (1571), Expect = 0.000e+0 Identity = 319/390 (81.79%), Postives = 343/390 (87.95%), Query Frame = 3 Query: 90 SRKEDYDDFGHDKDYILDEAKSHDKNVNESSTSFNAKTNNEHAVKEVKEESSLSREASQDFDDVDADSHHAGSLSHKSGKNLXXXXXXXXXXXXFSGSCEMKLMNSTHLVEPVESRKFARFSLQYKQMEEKPEGEDQWVPRFAGHQNLQEREESFFARDQKINCGFVKGPQGYPSTGFDLAEDDVNYISRCHIAVISCIFGNSDRLRTPAGKMVTRSSRKNVCFVMFVDEATMQTLYSEGQTPDGGFIGLWKIVVVKNLPYTDMRRVGKIPKLLPHRLFPFARYSIWLDSKXXXXXXXXXXXXYFLWRKGHEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQFDFYQADGLKRFDASDPNKLLPSNVPEGSFIVRAHTPMSNLFSCL 1259 S+ EDYDDFGHDK+ +DEAKSHD++V E ST +KT H VKE KEES LSREAS DF DVDA+S H GSL K K+ R+ K+KPRRRKFSGSCEMKL+NSTHLVEP+ESRKFARFSLQYKQMEE EGE+QWVP FAGHQ+LQEREESF A DQKINCGFVKGPQGYPSTGFDLAEDDVNYISRCHIAVISCIFGNSDRLRTPAGKMVTR SRKNVCFVMFVDE TMQTL+SEGQ+PDGGFIGLWKIVVVKNLPY DMRRVGKIPKLLPHRLFP ARYSIWLDSKLRLQRDPLQLLDYFLWRKGHEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQF+FYQADGLK+F++SDPNKLLPS+ F+ H S++ CL Sbjct: 252 SQTEDYDDFGHDKEDNVDEAKSHDEHVKEFSTF--SKTKERHVVKEGKEESMLSREASGDFGDVDANSQHVGSLGRKGAKSSRADSKRKPRRRKFSGSCEMKLLNSTHLVEPLESRKFARFSLQYKQMEENSEGEEQWVPTFAGHQSLQEREESFLAHDQKINCGFVKGPQGYPSTGFDLAEDDVNYISRCHIAVISCIFGNSDRLRTPAGKMVTRLSRKNVCFVMFVDEVTMQTLFSEGQSPDGGFIGLWKIVVVKNLPYADMRRVGKIPKLLPHRLFPSARYSIWLDSKLRLQRDPLQLLDYFLWRKGHEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQFEFYQADGLKKFNSSDPNKLLPSS----KFVKDTH---SSILRCL 632 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005499 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0005499 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0005499 ID=g.arboreum_cottongen_reftransV1_0005499; Name=g.arboreum_cottongen_reftransV1_0005499; organism=Gossypium arboreum; type=contig; length=1850bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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